RNA id: XM_007245554.2


Basic Information

Item Value
RNA id XM_007245554.2
length 4112
RNA type mRNA
GC content 0.47
exon number 25
gene id clcn7
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28905061 ~ 28933768 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTGTCACGAGTTGGCTTATGACCGCTGGTGGTGGGGATGGGTAGGTAGTGAAGGCGCAGCTGCGGCCGCGGGTCtgatgttttatcttttttagagttttaaagCGCTTCAGCCGCGCCGCCCCGACATGGCCAACATCACCAAGAAGGTGTCGTGGTCCGGCCGGGGAGAGGAGCGGACCCCGCTGCTCAACGGCTCGGAGGAGGTCCGCTACAGCAGACAGTCGTCCGGAGGCAGTGTGTTCCACATAGGCAGGCTGAGCACTGTAGACCTTGACGAGGACATCACACCAGAAGAGgATCCTGTGAGGAGCAAACCAAAGGAGATTCCACACAATGAAAAGCTGCTTTCGCTCAAGTACGAGAGTCTGGACTATGACAACAGTGAGAATCAGTTATTTCTGGAGGAGGAAAGGCGCATGAGTCACATGAGCTTCAGATGTCTGGAGATCAGTCGCTGGGTCATCTGTGGTCTCATCGGTTTTCTGACCGGACTCATCGCTTGCTTCATTGACATTGCGGTGGAGTATCTGGCTGGAGTGAAGTATGATTTAGTCAAAGAGAACATAGAGAAGTTCACAGAAGTTGGAGGTCTCTCCATCTCCTTGATCCTCTGGGCGGTGCTGAACTCTGCTTTCGTCATGGTCGGTGCATTGGCGGTTGCGTTCTTTGAGCCTGTTGCAGCAGGTAGTGGAATTCCTCAGATTAAATGCTATCTGAACGGAGTGAAGGTTCCTCGAGTCGTCCGGCTCAAGaCTCTGCTGGTGAAGGTGTTTGGTGTGATCTGCTCTGTAGCGGGAGGCCTGGCTGTGGGAAAGGAAGGGCCTATGATCCACTCTGGAGCTGTGGTGGCAGCTGGTGTGTCGCAGGGCAGGAGCACCTCACTAAAGAGGGACTTCaagATTTTTGAGTATTTCCGCCGGGACACAGAGAAGAGAGACTTTGTgtctgctggagctgctgctggagtCTCTGCTGCGTTTGGAGCTCCTGTTGGTGGAGTTCTGTTCAGTTTAGAAGAAGGAGCATCTTTCTGGAACCAGATGCTGACCTGGAGGATTTTCTTCGCCTCAATGGTCTCCACGTTCACCTTGAACTTTTTCCTGAGTATTTATCACAAAAAACCTGGAGAGCTGTCCAGTCCTGGTCTCATCAACTTCGGAAGATTCGACATGGATAATGTGCAGTACAGTCTCTATGAGATTCCTCTCTTCATAATAATGGGAGCGATAGGTGGAGTTTTGGGAGCGCTGTTCAACGTTCTCAACTACTGGCTGACGATTTTCAGGATCAGGTACATGCACCGGCCGTGTCTGCAAGTGATGGAGGCCATGCTGGTCGCCGCGGTGACAGCCACCGTGTCCTTCGCTATGATCTATTTCTCTAATGACTGCCAGCCTCTGGAAACGGTGACATCTGAGGATTATCCTCTACAGCTCTTCTGTGCTGATGGAGAATACAACGCCATGGCAACAGCGTTCTTCAACACACCCGAGAGGAGCGTGAGAAGTCTGTTCCATAATCccccagGCACCTATAACCCGCTGACCCTCGGCCTCTTCACCCTGACCTACTTCTTCCTGGCGTGCTGGACGTACGGCCTGACCGTTTCAGCAGGAGTCTTCATTCCCTCACTGCTGATCGGGGCAGCCTGGGGGCGGCTCTTCGGCTTACTGTTGTCCCTCATGACCACCGGAAAACTGgtaTGGGCGGATCCTGGAAAGTACGCGCTGATGGGAGCTGCAGCTCAGCTCGGTGGAATTGTGAGAATGACGCTGAGTCTGACAGTCATTCTGGTGGAAGCGACAGGAAACGTTACCTACGGTCTGCCCATCATGCTGGTGCTGTTGACTGCCAAGATTGTGGGAGACTATTTTATTGAAGGCCTTTACGATGTACACATTAAGCTGCAGAGTGTTCCTTTCCTGCACTGGGAGGCTCCTGCTACCTCTCACTGGCTGACAGCAAGAGAGGTCATGAGCTCTCCAGTTACCTGCTTTAACAGAGTGGAGAAGGTGGGCACCATCGTGGATGTTCTCAGCAACACGTCTACCAATCACAACGGTTTCCCTGTGATCATCCAGGCTGCTGCCAGTGAAGAGCCCGGGAAGCTCTGCGGCCTCATCCTTCGTTCTCAGCTCATCGTTCTTCTGAAGCACAAGgtgtttgtgGAGAGGGCTCGTTCAAGGCTGAGTCAGCGTAAGCTGCAGCTGAAGGACTTCAGAGATGCCTACCCACGATTCCCTCCGATCCAGTCCATCCACGTGTCCCAGGACGAGAGGGAGTGCATGATGGACCTGACGGAGTTCATGAACCCGACCCCCTACACTGTGCCTCAGGAAACGTCGCTCCCTCGTGTGTTTAAGCTGTTCCGGCCGCTGGGGCTCAGGCACTTGGTGGTGGTGGATGATGAAAACAGGGTCGTTGGGTTGGTGACCAGGAAGGATCTTGCTCGCTATCACCTGGGTAAGCATGGTCTGGAGGAGCTGCACCTGGCTCACACATGATGACCACCGGCCCTCCATACCCTCGCTCGCCTTCTGCCCACCCTCGCTGTTGGAGCCCCCTGACTGCAGCAGGCAGGATCTGGAGACGCTCAACAGATTAAATACGTTCCAGACATGGCGGACACACACCTGCAGCCCACAGCCGATACCAGTAAAGGCCTGGATACACCTGGAAGACATTTCCTTCAGAGACAGAGAATTCATACTGATTCTGAGAAAAAAACTCTCCGGGTCTCAGAGCTGAAAGACAGTGTTTTAACGAAGGCTGGGATTTAACAGACTGTTTAATGAAGCTGGTGTGTGTTTCAGGACACTTTCCACACTCTTTAGTTTCTGCACTCTTCATATTGTATCCAGGTcttttgttaataataatttaagggCTCAGTTGAGTTAGAGTGTAGACGTTTTGCTGCCTGTTGGTTTACAAAGCGAGCACATTACAAAGCATTTTTACGTTTTGCACTGCTGCaccactgtgtttatttattgcttttgaagcctttgttttttttttcatccatcaTATTCTCATCACCCCTAAATCTATATGTTCTTTCACATTTCTTGCATTTTTGGATTTTGGCattttgtttaatatgtttaatgttaaatataatcttaaaaataatggTACTTCAAATGGTTTAAGAATCACTGGCCTTATTCACCAAGCAGTCTTAAGAAGATCGTCTTAAAATATTGAGAGTCCGACATTCgctatttttttgttctgcatTTTAAAACACATCCTAAATCTAATGTAGACTTTCTGTTTAAGGAAATTCTTGGGAATTTTAAGAAAATTCTTGGGAGTTTTAAGTCAATTCTTGGGAATTTTAGGTAAATTCTTAGGAATGTATTGGTGAACGAGGCTTATAGTTTAATAGAGATCTACGATTGTGAAGAGCCTTTTAAATGTTAGACAAAGTTTAGGGTTCtttacagtctttttttttttttttttgtaactgatATGGTCCTTAACGGAACAAAAATTGCTCAAAATTTgcttaaagaaccatttaaagcaccattattatttttaaaagatcCTGTTGACATAAAGGACAAAGTTAAAGCATCTTTcgattaaattgatttttttttaataattcatttcaaattttaccccattttctatttaatgttAGACAAATTGCTCAAATCCCTCCTCGATAGAAGCCAATGCAATCAGAGGAAAGCgccggatccccagctctgatacatcagctaacaggtGTCTGTGCTGACTAACATCACACTATTGGACTGATGTGTGAAGAAAGCATGGCCACCATTGCTCgttgctctctctcagactccggctgctgatgcttgATCCACGATTCAAACCATAGTGACTGCCTTAGTTTGCTGGACCAGGTGGAGCCAAAATTAGAGCTGAGCTGAGAGTTTCATCAGCTCTTCGTAATTAAAGTACACTGATTATAGCTATGttttgattttaattcatttttcactcattttcagACTCCCCTCCTAAAGTTGAAAGTGGCCAATAGAAATCTGTATAATAGCcatataatacagctctggaaaaaataagagacatttcctcatttagagcatttatttgcagaaa

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:1902476 chloride transmembrane transport biological_process
GO:0044070 regulation of anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0030554 adenyl nucleotide binding molecular_function
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05016 CLCN7; chloride channel 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19337 lncRNA downstream 4961 28899353 ~ 28900100 (-) True G14415
TU19338 lncRNA downstream 4961 28899353 ~ 28900100 (-) False G14415
XR_002650746.1 lncRNA downstream 89183 28813041 ~ 28815878 (-) True LOC111193842
TU19296 lncRNA downstream 114003 28749534 ~ 28791058 (-) False carhsp1
TU19295 lncRNA downstream 145920 28749534 ~ 28759141 (-) True carhsp1
TU19340 lncRNA upstream 16977 28950745 ~ 28951228 (-) True G14417
TU19343 lncRNA upstream 26573 28960341 ~ 28963827 (-) False G14420
TU19345 lncRNA upstream 26573 28960341 ~ 28963827 (-) True G14420
TU19354 lncRNA upstream 73264 29007032 ~ 29011028 (-) True G14425
TU19359 lncRNA upstream 130556 29064324 ~ 29064730 (-) True G14430
XM_022675901.1 mRNA downstream 75547 28821968 ~ 28829514 (-) True eci1
XM_007245549.3 mRNA downstream 92937 28802090 ~ 28812124 (-) True naa60
XM_022675872.1 mRNA downstream 108603 28753764 ~ 28796458 (-) False carhsp1
XM_022675874.1 mRNA downstream 130833 28753764 ~ 28774228 (-) False carhsp1
XM_022675873.1 mRNA downstream 142939 28753764 ~ 28762122 (-) False carhsp1
XM_022677733.1 mRNA upstream 858 28934626 ~ 28943090 (-) True ptx4
XM_007245558.3 mRNA upstream 32717 28966485 ~ 28995105 (-) False usp7
XM_007245557.3 mRNA upstream 32717 28966485 ~ 28995105 (-) False usp7
XM_007245556.3 mRNA upstream 32717 28966485 ~ 28995105 (-) True usp7
XM_007245559.3 mRNA upstream 32717 28966485 ~ 28989664 (-) False usp7
TU18940 other downstream 1875144 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2002348 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2002348 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2071463 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2206268 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 679844 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 823919 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 955467 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 1327250 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1955838 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile