RNA id: XM_007245558.3


Basic Information

Item Value
RNA id XM_007245558.3
length 4658
RNA type mRNA
GC content 0.50
exon number 31
gene id usp7
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 28966485 ~ 28995105 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGCGCGACCGCCATTTTGAGTTTTGCCTCAAAACTGAACCTGTAGAACAgcaacggagagagagagagttagagcgAGGGGGCAGagtgagagcgtgtgagagagagagtgagagagtgaaagtgagagaggcAGACTCGCCGCGGCCGCAGACGGACAgaattattctcttttttttattattttattggggATAAAGCGCCGGCGATGCGCCTGCTCGCCGTGGGGCCTCCGCGGGTGGGAGAGTCGAGCTGAAGCGCCGCCGTCTCTTTAAACTTGTAGCCGCGTTTAGCGCTGGTTTGAATGGATAGCTGTTCTGCCCGCTCCCCCTTCTTACAAGAGGGACGGCTGGAGGAGCATACGGACTGGAAAAGCGCTGCGGGGGAAAGTTGTTGTGTTTGAAGCCTAGCTAGCTACTAGCTCTGGTTAACTAATTTcttttctcttaaaaaaaatctctaaataGCTGCTGCTGACTTGAATTTCCCCTCAGTgcaagagagtgagtgagtgtgtgtataagagtgtgtttgggggggaggaggaggaaaaacgGGGGGAAAATAGACTCTGAGACTCTCTCCTTTTTACTTCATCGGGCCTCCAGCGTATTGGAGCCCGGGCTCGTAGACTCAGATTTAGCTATCCACTCTCAGCGCCAGGCAGCCGCCCCCCCACCAAAGGCGCCGAGATTGGGCGAATAGCAAGCAAATACGTCCGCGTGTCTCTGCCCGCTCCCCCACCGGCCTCCCTCACTCCAACCCCGGCGCTGACTGCAGGAAAGGCCGAGGTCGTGCTAGTGCAGCAGGCCCAGGCGCAGAGGCTCGACCTGAGCaccccacctccaccaccacctccgCATCCTCCAGCTCCCCTCCACCACCACAATCTCCAccagcagcaccaccaccagccACCTAGGTCCACTGTCCCCACGGAACCGACACAGGACAAGGTCGAGGGAGAGGGAGACAAAGCCCAAAGAGACAGGCAACATCctgaccagcagcagcaacatcaCCATCATCCTCCTGCCGCAGCAGCAGACATCGCCACCatgaaccaccaccaccacactcaacaacaacagcagcagcagcaacagaaaGCCGGCGAGCAGCAGCTCAGCGAGCCGGAGGACATGGAGATGGAAGCTGGGGACACAGATGATCCCCCAAGAATCCCTCCAAATCCTGTCATCAATGGGAATGTGGCAATGGCGGACGGACACAACAACACAGAAGAAGATATGGAGGACGATACAAGCTGGCGTTCAGAGGCCACCTTCCGCTTTGTGGTGGAGCGTTTCAGCAGGTTGAGCGAGTCGGTTCTCAGCCCATCATGTTTCGTGAGGAATCTTCCATGGAAGATCATGGTGATGCCCCGCTTCTACCCAGACAGACCTCACCAGAAGAGTGTGGGCTTCTTTCTGCAGTGTAATGCTGAGTCAGATTCTACATCATGGTCATGTCACGCTCAAGCCATGCTGAAGATCATCAACTACAAAGACGATGAAAAGTCATTCAGTCGTCGGATCAGTCACCTGTTCTTCCACAAGGAAAACGACTGGGGTTTCTCCAACTTCATGTCATGGAGTGATGTAACTGACCCAGAAAGAGGCTTTGTGGAAGATGACAAGGTCACGTTTGAGGTTTATGTCCAGGCTGATGCTCCACATGGAGTGGCATGGGATTCTAAGAAGCATACAGGTTATGTAGGGTTGAAGAACCAGGGAGCCACATGTTACATGAACAGCCTACTACAAACACTCTTCTTCACCAACCAGCTCCGGCGGGCGGTATACATGATGCCCACCGAAGGCGATGACTCCTCCAAAAGTGTTCCTCTTGCTCTGCAGAGGGTCTTCTATGAACTCCAACACAGTGATAAGCCTGTCGGGACAAAGAAGCTGACTAAGTCCTTTGGGTGGGAGACTTTGGATAGTTTTATGCAGCATGATGTGCAGGAGCTGTGCAGAGTGCTTCTGGACAATGTTGAGAACAAGATGAAAGGAACTTGTGTCGAAGGCACGATCCCAAAGCTCTTCAGAGGAAAGATGGTGTCCTACATCCAGTGTAAGCATGTGGATTATAGGTCTGAACGAATAGAGGATTACTACGACATCCAGCTCAGcataaaaggaaagaaaaacaTCTTTGAGTCGTTCAAAGATTACGTGGCTGTGGAGCAGCTGGATGGGGATAACAAGTATGATGCGGGGGAGCATGGCCTACAGGAAGCTGAAAAAGGGGTGAAGTTTCTGACTTTCCCTCCTATCCTGCACTTACAGCTCATGAGGTTCATGTACGACCCCCAGACTGACCAAAACATTAAGATAAATGACagGTTTGAGTTTCCTGAGCAGCTACCACTAGATGAGTTCCTGCAGAAGCCAGATGTGAAGGATCCTGCCAACTACATCTTGCATGCAGTGCTGGTGCACAGCGGGGACAACCACGGAGGCCACTATGTCGTCTATCTCAACCCCAAAGGAGACGGCAAATGGTGCAAATTTGATGATGACGTTGTTTCCCGCTGCACTAAAGAGGAAGCCATAGAACACAACTACGGTGGCCATGATGACGACCTCTCCGTACGTCACTGCACCAACGCGTACATGTTGGTGTACATCCGAGAGTCTAAACTGAGTGAAGTGCTACAGCCAGTCACAGACATGGATATCCCTCAGCAGCTGGTGGAACGGCTGCAGGAGGAGAAGAGGGTGGAGGCACAGAAACGGAAGGAGCGCCAGGAGGCTCATCTCTACATGCAAGTACAGATGGTGACAGAGGACCAGTTCTGTGGACACCAGGGCAATGACATGTACGATGAGGAGAAAGTGAAGTACACAATATTCAAGGTTCTGAAAAGCTCGACCCTAGCGGAGTTTGTGCAGAACCTATCACAGACCATGGGTTTCCCACAGGACCAGATGCGGCTGTGGCCCATGCAGGCCAGGAGCAATGGCACCAAGCGGCCAGCCATGCTGGATTATGAGGCTGATTGCAACAAGTCTATGATTGACTTGAGCGACAACGAGAATCCGTGGACAATATTTTTGGAAACGGTAGACCCAGAAATGGCTGCAAGCGGTGCAACATTACCCAAGTTCGACAAAGACCacGATGTCATGTTGTTCTTGAAGATGTATGACCCCAAAACCAGAAGCTTAAATTATTGTGGACATATCTACACACCTATATCCTGTAAAATACGAGACTTGCTGCCCGTCATGTGTGAAAGAGCAGGGTTTCAGCAGGGAACTAGTCTTATCCTCTATGAGGAAGTTAAACCGAATTTAACAGAGCGTATACAGGACTATGATGTCTCCCTGGACAAAGCTTTGGATGAGCTAATGGATGGAGACATCATCGTGTTCCAAAAGGACGACCCAGAGAACGACGCCAGTGAGCTGCCAACTGCAAAAGACTACTTCAGAGACCTGTACCACCGTGTGGATGTCATCTTCTGTGACAAAACCATCCACAACGACCCAGGCTTCGTTGTGACGCTGTCTAACAGAATGAACTACTTCCAGGTGGCGAAGACTGTTGCACAGAGGTTAAACACTGACCCCATGCTCTTACAGTTCTTCAAGTCCCAGGGGTACAGAGATGGCCCAGGCAACCCACTCAGGCACAACTATGAGGGCACTCTCCGAGACCTGCTGCAGTTCTTCAAGCCCCGGCAGCCTAAGAAGCTCTATTACCAGCAGCTCAAGATGAAGATCACTGACTTTGAAAATAGGAGGAGTTTCAAGTCCATATGGCTCAACAGTCAGTTCCGGGAggagGAGATCACACTGTACCCAGACAAGCATGGCTGTGTTCGAGACCTTCTGGAAGAATGTAAAAAGGCAGTGGAGCTCTCTGATAAAGGCTCAGAGAAGCTGAGGCTGTTAGAAATTGTAAGCTACAAAATTATCGGGGTTCACCAAGAGGAAGAATTGCTAGAATGTTTATCTCCTGCAGCCAGTCGAACATTCAGAATAGAGGAAATCCCGCTTGACCAGGTGGACCTGGATAAGGAAAATGAGATGCTGATTCCAGTTGCACATTTCCACAAGGAGGTCTTTGGGACTTTTGGTATTCCATTCTTGCTGAAGATCCGCCAGGCGGAACCCTTCAGAGAGGTGATGAGGAGGATCCAGAGCATGCTGGATATCCAGGAGAAAGAATTTGAGAAGTTTAAGTTTGCAATTGTCATGATGGGTCGGCATCAGTACATCAATGAGGATGACTATGAAGTGAATCTGAAGGACTTCGAGCCACAACCAGGAAACATGTCCCACCCGAGGCCTTGGTTAGGTCTCGATCACTTCAACAAGGCTCCAAAGAGAGGGCGCTACACGTACCTGGAGAAGGCGATTAAGATTCACAACTGACAAGCTCTCCCCACCTTAACCGACCCTACTAAAGACTTTAACCAAACTGTCTTGTGTGCACCACTTTTACCACCTGCTGTCTGGGCACACAGGCCCAATGTATGAAGTCTTCAGCAAAACGGAGTTGCGCTCATgggtttttccttttcttttcttttttttttttttctttccccttccctttttttcctctccgATTTGGCTTCACTATCAACTGCCTATTTCGTCTGGAAGAACTAATTGGATTTTAACGAAAGGAGGGGATCAGTATGAA

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19343 lncRNA downstream 2658 28960341 ~ 28963827 (-) False G14420
TU19345 lncRNA downstream 2658 28960341 ~ 28963827 (-) True G14420
TU19340 lncRNA downstream 15257 28950745 ~ 28951228 (-) True G14417
TU19334 lncRNA downstream 42235 28903761 ~ 28924250 (-) True G14412
TU19337 lncRNA downstream 66385 28899353 ~ 28900100 (-) True G14415
TU19354 lncRNA upstream 11927 29007032 ~ 29011028 (-) True G14425
TU19359 lncRNA upstream 69219 29064324 ~ 29064730 (-) True G14430
TU19362 lncRNA upstream 105811 29100916 ~ 29101222 (-) True G14433
TU19374 lncRNA upstream 133900 29129005 ~ 29129372 (-) True G14445
TU19379 lncRNA upstream 160176 29155281 ~ 29155918 (-) True G14450
XM_022677733.1 mRNA downstream 23395 28934626 ~ 28943090 (-) True ptx4
XM_007245554.2 mRNA downstream 32717 28905061 ~ 28933768 (-) True clcn7
XM_022675901.1 mRNA downstream 136971 28821968 ~ 28829514 (-) True eci1
XM_007245549.3 mRNA downstream 154361 28802090 ~ 28812124 (-) True naa60
XM_022675874.1 mRNA downstream 192257 28753764 ~ 28774228 (-) False carhsp1
XM_022675956.1 mRNA upstream 316305 29311410 ~ 29583262 (-) True grin2a
XM_022676002.1 mRNA upstream 618381 29613486 ~ 29643240 (-) True emp2
XM_007245571.3 mRNA upstream 762582 29757687 ~ 29761252 (-) True dexi
XM_015604861.2 mRNA upstream 882936 29878041 ~ 29880914 (-) True socs1
XM_022676078.1 mRNA upstream 893694 29888799 ~ 29892305 (-) True LOC111193878
TU18940 other downstream 1936568 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 2063772 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 2063772 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 2132887 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 2267692 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 618507 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 762582 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 894130 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 1265913 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 1894501 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile