RNA id: XM_007245593.3


Basic Information

Item Value
RNA id XM_007245593.3
length 3660
RNA type mRNA
GC content 0.53
exon number 16
gene id LOC103034575
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31106308 ~ 31125146 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCCGCCATTTTAAGGTCCAGTTCGCAGCTCCACAGCGGCGGGGCGAGCAGGAGCGGCAGCCGGATCTGGAGGAGAGAATACCGGGTGGTCCGGCTGTTTTATTACGGTTTTAACGTTCGTACGGTGCTATTTACGTCGTGGACGAGTGTAAAAACGGAGTGTCGGTTTTTATATAAGATTTGGAAGTAGTTCGGACTGAGGGCTTGGCAGCACGATGGCTACCCAGTCTGATCTGATGGAGCTGGACATGGCTATGGAGCAGGACCGGAAAGCTGCAGTCAGCCACTGGCAGCAGCAGTCCTATCTGGACTCTGGTATCCACTCTGGGGCCACCACCACCGCACCCTCCCTTTCTGGCAAAGGCAACCCAGAAGAGGAGGATTTGGACAACCAGGTGCTATATGACTGGGAGCAAGGCTTCAGCCAGCCCTTCACCCCAGAACAGGTGGCAGACATGGATGGCCAGTATGCCATGACCCGTGCCCAACGCGTGCGTGCCGCCATGTTCCCCGAGACCCTGGATGAAGGCATGCAGATTCCCTCAACTCAGTTTGACTCCGCCAACCCCACAAATGTCCAGCGACTGGCAGAACCCTCGCAGATGCTCAAACATGCTGTTGTCAATCTCATCAACTACCAGGATGATGCTGAACTGGCCACCAGAGCCATCCCTGAGCTCACAAAGCTCCTCAACGATGAAGACCagGTGGTGGTGAACAAGGCGTCTGTGATGGTGCACCAGCTCTCCAAAAAGGAGGCCTCGCGCCACGCAATCATGCGCTCTCCTCAGATGGTATCTGCCATCGTCAGGACGATGCAGAACACCAACGACGTGGAGACCGCTCGCTGCACAGCCGGAACACTGCACAACCTCTCCCACCACCGAGAGGGACTGCTCGCCATCTTCAAATCCGGAGGCATCCCTGCTCTCGTCAAGATGCTGGGATCTCCAGTAGACAGTGTTCTGTTCTATGCCATCACCACACTGCACAACCTCCTCCTGCACCAAGAAGGGGCGAAGATGGCCGTGCGTCTGGCTGGCGGCCTGCAGAAGATGGTGGCTCTTCTCAACAAGACCAATGTCAAATTTCTTGCCATCACCACAGACTGCCTACAGATCCTGGCTTACGGCAATCAGGAGAGCAAgTTGATAATCTTGGCAAGTGGTGGACCCCAAGCCCTGGTGAACATCATGAGGACCTACACATACGAGAAACTGCTGTGGACCACCAGCCGTGTGCTGAAAGTGCTGTCTGTCTGCTCCAGTAACAAACCCGCCATCGTGGAGGCTGGAGGTATGCAGGCTCTGGGACTTCACCTGACAGACCCCAGCCAGCGTCTAGTACAGAACTGCCTCTGGACCCTCAGAAACCTGTCAGATGCTGCAACTAAACAGGAGGGTATGGAGGGTCTCCTCGGCACCCTGGTGCAGCTCCTCGGCTCAGACGACATCAACGTGGTCACCTGCGCCGCTGGCATCCTCTCCAACCTCACCTGCAACAACTACAAGAATAAGATGATGGTGTGCCAAGTGGGCGGAATCGAGGCGCTGGTTCGCACAGTGCTGAGAGCCGGAGACCGGGAGGACATCACAGAGCCCGCCGTCTGCGCCCTCCGCCACCTCACCTCCAGACACCAGGACGCAGAGATGGCCCAGAATGCTGTGCGCCTCCACTACGGCCTCCCTGTGGTGGTCAAACTGCTGCACCCGCCCTCACACTGGCCTCTTATTAAGGCCACCGTTGGTCTGATCCGTAACCTGGCACTGTGTCCAGCCAATCACGCGCCTCTGCGTGAGCAGGGTGCCATCCCCCGATTGGTCCAGCTGCTGGTGAGGGCGCACCAGGACACCCAGAGACGCACCTCCATGGGCGGCACCCAGCAACAGTTTGTTGAGGGAGTCAGGATGGAGGAGATCGTGGAGGGCTGCACCGGGGCGCTCCACATTCTGGCCAGAGATGTGCACAACAGAATCGTGATCAGAGGACTCAACACCATCCCTCTGTTTGTACAGCTGCTGTACTCTCCAATTGAAAATATCCAGCGCGTGGCCGCAGGCGTGCTGTGTGAACTGGCGCAGGATAAGGAGGCGGCTGAAGCTATCGAGGCGGAGGGAGCCACCGCACCCCTCACTGAACTGCTCCACTCCAGGAACGAGGGAGTGGCCACATACGCGGCAGCAGTGCTGTTCCGCATGTCAGAAGACAAACCTCAGGACTATAAGAAACGCTTGTCTGTGGAACTGACCAGCTCCCTGTTCAGAACAGAGCCCATGGCCTGGAACGAGACTGGAGATATGGGTCTGGATATCGGAGCACAAGGAGAACCTGTTGCATACAGAGCTGATGACCCCAGCTATCGCTCCTTCCACTCCGGCTACGGTCAAGACGGCCTGGGAATGGACGGCATCCTCGAGCACGAGCTGGCCGGCCACCACCCTGGAGCGGATTACCCTGTAGAGGGTCTGCCTGACCTCGGCCACGCCCAGGACCTGATGGACGGCCTGCCTCCCACAGACTCCAATCAGCTGGCCTGGTTCGACAcagacctttaaaaaacactcacAGTCTGGACGAAGTGACGCTCTTTTTGTCTGAGTGAAACTGCATTGTGATTTTTGCCTGAGGAGTGACGGGACGTTTGCAGAGGGTGGGCGAGCATATCGGAAAGTGCCtgacacgacacacacacacttacacaaacttacacacacacacacacacacacacaaacaaatacatgcatacaaactatatatatacacacacacacacacacatgcacactcgttggggaggagagggaggagTTTCTACacgaagaggaagaggaaatgAAGCTGAACCTTTTTTCCCACCCTTTGAGTTTCCTCCCTCTTGTTCCagacattttgtttgttttttctttctgccCTGGATGGAGGAAGGAAGTTGCGAGGGATTTGAGGAGCGGATGCTCTTGACGATTGCACCAGAGCGAGATCATAAGACGGAACTGTAAAACCTTTTTAGCCTGgtttttatttcaccttttttctttttaatttcttttttaccTTCTTTTATATCATCGGTCTTTATGGTACTGACCCCTAGCTTGGTTTGATCTCTAGTCTGTATTCATTAACTTcactttctgttttattttttctgtttcagcAGTAATTTGTATTCCATTTTATAACGTCTTTCTGTAGTGTTGAGTTCTAGTGGAGTTGCCTCTGTTGGTTTCTGAATCTTTCTCACGTAACGGTGTCGAACACTAATATCAGTTCTTATGTAATCTGACTGAAAGTGTAACAATGTgtagctttctttttttctttgttttatttcctttttttatacgATCAGCTGTTCAAATGGGGTGTACTGGGGTGGGAGAAATATATGCATTCTTTATTAAAATACCTAAAAAACCAAGTGAAGAGAAACTGTTTTCAGTGTAAACGGTTGTTCCAAAAAGGGTTGCGGAGGGGGGGTGAACTGAGGGTGGGCGGGGGTGCAGGCAGTAGCACAGAGACAAATCTTTCTTTTCTATCATGCTATCCTGAGGTAGTACCGATTTAAAGCAACGTGCAGTCGTCAGTGGTTTGCCTGCGTGGCCTATTTTGGGAACATGGTTGATGACAAggttaaacaataaaagacttTTATTCCA

Function

GO: NA

KEGG:

id description
K02105 CTNNB1; catenin beta 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19921 lncRNA downstream 57701 31048356 ~ 31048607 (-) True G14834
TU19905 lncRNA downstream 122277 30983540 ~ 30984031 (-) True G14820
TU19866 lncRNA downstream 177919 30924840 ~ 30928389 (-) True G14807
TU19871 lncRNA downstream 177919 30926835 ~ 30928389 (-) False G14807
TU19839 lncRNA downstream 182221 30923812 ~ 30924087 (-) True trnap-agg_1
TU19979 lncRNA upstream 55840 31180986 ~ 31193793 (-) True G14876
TU19980 lncRNA upstream 56680 31181826 ~ 31229953 (-) True G14877
TU19982 lncRNA upstream 87423 31212569 ~ 31214056 (-) True G14879
TU19985 lncRNA upstream 130839 31255985 ~ 31256204 (-) True G14882
TU19986 lncRNA upstream 135622 31260768 ~ 31260986 (-) True G14883
XM_022676251.1 mRNA downstream 23016 31058768 ~ 31083292 (-) True LOC103047264
XM_015604857.2 mRNA downstream 27884 31058768 ~ 31078424 (-) False LOC103047264
XM_015604858.2 mRNA downstream 30609 31058768 ~ 31075699 (-) False LOC103047264
XM_022676246.1 mRNA downstream 30609 31058768 ~ 31075699 (-) False LOC103047264
XM_022678009.1 mRNA downstream 136150 30967269 ~ 30970158 (-) True LOC103046348
XM_022678020.1 mRNA upstream 91086 31216232 ~ 31222423 (-) True LOC107197536
XM_022676307.1 mRNA upstream 755648 31880794 ~ 31943297 (-) False pdlim7
XM_022676290.1 mRNA upstream 755648 31880794 ~ 31943297 (-) False pdlim7
XM_022676287.1 mRNA upstream 755648 31880794 ~ 31943290 (-) False pdlim7
XM_022676277.1 mRNA upstream 755648 31880794 ~ 31943289 (-) True pdlim7
TU19927 other downstream 50805 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 182361 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 183059 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 213660 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 1017582 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 1688928 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 1688928 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 1688928 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 3009446 34134592 ~ 34136732 (-) True G15497

Expression Profile