RNA id: XM_022676341.1


Basic Information

Item Value
RNA id XM_022676341.1
length 4258
RNA type mRNA
GC content 0.51
exon number 11
gene id rnf44
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31973592 ~ 31995512 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGGCGTAGCTCGATTCTTCCTGCACGCGGAAGCTTCGGTTCGGAGTCGATTCCCTCAGCAGTGAGCGGACCCTACCTACCAGAATGACAACACGCGCGGTGGAATGCTGTGAATTAAACGAGTCGCGGCGATTCTAAACGAACCTGCTGAAAGCAGCGACTCGCTCTCATCGCTCTGATCGGTCTGAGATGGAGAAAAGCGGCGGAGATCTCGGAGAACTCGCTTTATTCTGAAGCCTGCGCGGGATATGAGGAGTGGAGCGAGGCTGAGGAGCAGCGGGAGGAAGTAGTAATGGACAATAACgcggggaggaggaggagaagctcGGAGAGGAGCATGCAGGAGAGGAGCTGCTGATATTACCGCCTATCAggactgttattagtgtttatttcaCTGCTGAACGTCTGGATTTTGTCTGTAATGCTGTAGAACTGCGTGGGACGGGTTTGGACTGAAAAACAGAGTAAAGACAATCTGAGGCTGTGAGACCCAAGTGCCTCTAGCACTACCGCTCTGCCCCCCCGGCTGTGACTCGTTCGGCACGACGTCACAAATGCGACCATGGGAAATAGCTGTGAATAGGCGGCCGCCAACAGCCCCCTTAAACCAGAGGAGGTTCCTCGGGGAGCCCTGCAACACGCCTGTGCACCTCAGGAGAAGTCCTCCAGTGCGACGGCAGTGGGGGCAGCGAGACAGACCTGTTTTGCACGGCTCCCTGCGGCAGGATGAGACCTTTCACCATCCTGTGTTctcgcagcagcagcagcagcagcatcagcagcacgTTCCTCTAGAGGAGTCCCGGCAGTACAGCCACCCCAGCGCACCTCCACGCATGCTCCATCCAGCCACGCACCCGCCTCAGCAGAGCTCCATCATGGTGGACCTTCATGAACAGATGCACCAAGGATCAGTTCCAATATCTTACACAGTTACCACGGTGACGACCCACGGTTTTCCCATCCACACGGGGCAACCGATCCCAGCGTGCAACGCCCAGCAGCTCCCAGCATGCTCGGTAATGTTCAGCGGACagctctctctgctctgctgcCTTCCTCCTCCTCTAATTCAGGCATGCACCATGCAGCACTTGCCAGTGTCTTACCAGGCCTTTCCGCCGCTGATCTCCAGCGAGCACTTCATCCTGCACCCCAGCCCTCCAGTGCCGACTCACCAGCCCCCTCACCTGGCCCCGCTGAGCCAGTTCGTCCCCCTGCAGCCACAGCACCCACGCATGCCTCTGCAGAGAGTGGAGAATGAGGTGGACCTGAGAGGAGACCAGCATCCTTTGGGAACATTCTCTTACCCTCCTGCCCATCACCCACCAGCAGCCATGCCCCCCTCCGTGCCCCTCCAGTACCTGCCCCAGGAACCTCTGCACCAAGAACTGCCCTTCGGAGTGCCATATGCACATGTGCTGCCCAGGCGTGGGAGTGGCCAGAGATACCGGTTACAGCAGCCTCTGCCGCCGccacccccacctccacctTACTACCCTGGCTTTCTACCTTACTTCCTCTCGATGCTTCCTGTGCCTCCGACTGCTGTGGGTCCCGCCATTAGCCTGGATCTGGACGTGGATGATGTGGAGATGGAGAATTatgagGCGTTACTAAACCTCGCTGAGCGGCTCGGGGAGGCTAAACCTCGAGGACTGACGAAAGCTGACATAGAACAGCTTCCATCCTACAGGTTCAATTCAGAAAACCACCAGTCTGAACAAACTCTATGTGTTGTGTGCTTTAGTGATTTTGAGTCAAGGCAGCTACTTCGAGTATTACCCTGTAATCACGAGTTTCATGCAAAGTGTGTGGACAAATGGTTAAAGACCAATCGCACGTGTCCGATCTGCCGCGCCGACGCATCTGAAGTTCACCGGGACGTGGAGTGAGTCCAGGCCTTCGTCCTTCACTGGAAAACAGCACAAACCTTGGAGTGTATCGTGCGAGCgggcacatacacacacctgccACCCAACCCCGTGCTCTCCAGCCAAATGCAAAAGCATCTCCCTCCCCTTAACACCAAACTCCTCCCCCTTACAAACCCCGCCCCTCCTACCCGTCAACAAATAAGCAATCTTGGAATTTGTACGGAACCTGTTAGACCTCTGCTGTGCATCATCGCGTGAGTTTTCATGAAAAGCTACTGCCGCTTAAAACTCTTATCTCCAATTCCCACTCCAGTTTACCCCCAACCTTAACCCTGTTCCCCTTCTTTTAGAGTTCTGCCACTGTTCCCCCGTTCTCAGTTCTGCCCTCGTTTTCGCAGATTCCAAAGATGAACCTGTAATGCGTGTTTGTGTTGCGTCTTCGTTTACacaaaaattcagatatttgaATATTCTCTAGGTGTTCGATCACAGATAATTCAGATAAGTCGTGCTTTTCGTGGTTgtggagggagacggggagAGGACCGGGACGGCGGTTGGGTGTTTTTGgggtttgattgattgattttaacgCCGTGCGATCAGACGAGCAGGGCgagaaacaagaaaaacaagaaagaaaagagtGAAACAAACTAAAAGAGCGTAAAGGAAAGGTGGAGCTCGTCTGAATAGACGTATAGACGCCATTCTGCTTGGATgcgaggggaaaaaaaaaatctatatatatataaaacacgtTTCGACCATCATAAGATGCATGTTTGTATAGGTGATGGGCTCAAGTGACTTGTTAATAATGTATGTTTTGCAATAACGTATTGATGATTTTCAATATCTTTATCCCGACTCTTTTTAACCTGCGAATGCTAATGTGAACGTTTGAACGTTATGACTTGCGGTGGTTCTGAATCTCCGAGGCCCGAGGTAAAGAAAATATacaggagggggaaaaaaaagactgtaaacAGTTCTGCAAAcgtaaaacatgaaatataagtgtgagtgtgagtgcacaaatatatgtgtgtgtgtgtgtgattgtgtgaatgGGGAGGAAAagttgaggtaaaaaaaaaaaaaaataccgaGAGACACTGAGGAGGGGAAGCCTgatggtggtgctggtggtggtgatgatgtggTGGTGGAGTTGAACCGGACTCTGGGCCTCATCGCTGTGGAGTTTTGCACTGTTGTTTGCGCTGGAAACATATAAAAGGTCACTGTGGCCCAGGACAAGGACAACCAAGGACATTCAAGGACAAGGACAGCTCCGTGCCTCTGACCTTCAAACCTCCTACCTTTCTCTAAACCCCCACCTTCTGACCTCCGGCCGCCTAAAACCCCACCCCAACCCCTCTCAAACCCAACTCTGGGCGGGCCGCACACACTTAAGCCCCGCCCCTTTCCCCCCGCCACTGCCGACAGGCCCCGTTACGGCCCTCTGGGAAAGCCTCCTGACCTCCACCCATCCACTCTTAACTCGCTCTGGTCTCCAGGAGAACTCACCGCAGGCCTTTGCACGGACTGTTTCTTTAGGTTAGCAATATTTTTTCCAGTCGACGAGCTCCCGCCGCATTTCAGCCGTTATTAAAATCCACCGGGTCCAACGGGAACGAGGGGAGGAGCGAGTCGCCGGACGCAGCGTGTGGAGAAAAGACGAGGGTGGACCTCAGTGCCAACGATCGCCAATGGCCACCAATGATCTCCAATGGTCACCAACGATCTCCAACGATGGCCAAATGGTCACCAATGATCGTCAATGGTCACCATCGATCGTCAATGGTCACCATCGATCGTCAATGGTCACCAATGATCGCCAATGGTCACCAACGATTTCCAATGGTCACCAATGATCGCCAATGGTCACCAACGATCACCAACGGTCACCAATGTTGGTCTTTGTGGTGGTGGGTGGGGGAACTTGCGTTACACCTGACGtccaaaaacaaacttaaaaaaactacagaaaaaaataaccgaaaaaatgactttttggAGAAGGTGCAACCCCTTTCTTTGCAGAAAGCAATATGTGCAATGAGTGTCTGTCGTGAATGAAACATATTTGACATATTTGATTTGTTCAAgtttttgggtttggtttgCTTTCGTTCGTTTGgtttgtattttcatttttgatttttgatttagtttttttttggatttcctGAATTTTCCTTTTTCCGTTCGGAGGACcaggctttttttgttttgttttgttttcctcgTTTGTGAGCCAAATATTCAATATACTCTTCGAGAATTCAGCTCTGCCTTCTTCAAGACCTTCTGACAAGCACAAACCTGTTActgatcttaaaaaaaaaactaaagaactaaagaaaaaaaaa

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K19041 RNF38_44; E3 ubiquitin-protein ligase RNF38/44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20186 lncRNA downstream 93749 31877805 ~ 31879843 (-) True G15022
TU20185 lncRNA downstream 94144 31877805 ~ 31879448 (-) False G15022
TU20187 lncRNA downstream 94144 31877805 ~ 31879448 (-) False G15022
TU20202 lncRNA downstream 96631 31845182 ~ 31876961 (-) True G15037
TU20188 lncRNA downstream 352295 31529337 ~ 31621297 (-) True G15023
TU20235 lncRNA upstream 3985 31994633 ~ 31995062 (-) True G15063
TU20251 lncRNA upstream 42403 32033051 ~ 32040230 (-) True G15074
TU20253 lncRNA upstream 42403 32033051 ~ 32038565 (-) False G15074
TU20256 lncRNA upstream 42403 32033051 ~ 32040230 (-) False G15074
TU20261 lncRNA upstream 51693 32042341 ~ 32045045 (-) True G15078
XM_007245599.2 mRNA downstream 15136 31955606 ~ 31958456 (-) True higd2a
XM_022676298.1 mRNA downstream 34784 31880794 ~ 31938808 (-) False pdlim7
XM_007245604.3 mRNA upstream 55461 32046109 ~ 32055172 (-) True abhd18
XM_022676379.1 mRNA upstream 83518 32074166 ~ 32119158 (-) True dgkq
XM_022676958.1 mRNA upstream 131574 32122222 ~ 32159963 (-) True nfkb1
XM_007245610.3 mRNA upstream 170171 32160819 ~ 32172940 (-) False LOC103039786
XM_007245609.3 mRNA upstream 170171 32160819 ~ 32172940 (-) True LOC103039786
TU19927 other downstream 918089 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 1049645 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 1050343 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 1080944 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 152080 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 823426 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 823426 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 823426 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 2143944 34134592 ~ 34136732 (-) True G15497

Expression Profile