RNA id: XM_007245604.3


Basic Information

Item Value
RNA id XM_007245604.3
length 2012
RNA type mRNA
GC content 0.52
exon number 13
gene id abhd18
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 32046109 ~ 32055172 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAGGCACCACAGAGGAAGAGGGGGGCACCCGCACTGCATGCCGGGACGGCGGAGCTGCAGCGAGGCGGAATTCGCCCTCTGAGATGAGAAACAGCCGCCAGAGTCTCGATCCGCGCTTCAGGTGGAGATGACAGGTTCTTGCCAATGGGTGTGAGCCGGCTTGATGTTCTCTACAGAAAGCTCCTCCTCACCAAACTCTTCATCCAGGGATGGGGAAAGCCAGAAGACCTGAAAAGAATATTTGAGTTCCGGAAAATCATTGGCAACCGAGACAAGTGTAAACACTTGGTACCCCGGGATTATCCAGTGTTTACTGATAAGGTGGAGGATCACTCCGACTGTAAAATCCACAATGGACACTTCATATCTCCACTGGAGCACCTGGTCCCAGGCGTTCTGCCTGCCGAGTCTGTTAAAGCCAGGTTCCAGTTTATAGTACCCAAACGATGGAGGAAGCACAGACCAGTCTGCATCCATCTGGCTGGAACTGGAGACCATtttttctggaggaggagaaccCTCATGGCCAGACCCATGATTAAAGAAGCAGGAATGGCCTCCTTACTGCTGGAAAACCCTTACTATGGATACAGAAAACCCAAAGATCAAGTACGTTCCAGTCTGAAGAACGTCTCGGACCTGTTCGTGATGGGCGGAGCTCTTATACTGGAGTCTGCGGTTCTGCTTCACTGGTTGGAGCGGGAGGGCTTCTGGCCGCTGGGCATGACCGGCATCTCTATGGGAGGCCATATGGCATCTTTGGCCGTCACAAACTGGCCCAAGCCGATTCCTCTGATACCCTGTCTGTCCTGGACCACTGCTTCCAACGTTTTTACTACAGGAGTTTTAAGTAAAGCTGTAAACTGGAGACAGCTGGAGAAGCAGTACgccacacacactgtatacgaGAAGGAGATCATCCACATGCTGGAGTACTGTGGGACAGATTCATTCCGGATGGGTCAGGACTTCGTGAGGAACTCCCCAGGCAGTTTCGAGAAGCTCTCTGGTCTGGCCCTGTCCCGGGACCTGCTGGGTCTGAGCGGCGCGGAGGGCGAGCAGGTGGGGGGCAGGCCAGGGGCCGGCGGGCGAGGTCCGGACCCCAGCCTGCTGCTGCAGCGGAGGGACGGGGACGGGCTGGACCGCATGCTGTCGGCCGTGAGCAGCAGCCGGCCGCACATGGACATGCTGCACGCCAAGAACGTCAGCCCCGGAGCGGGACAGCGCCACTCCCTGCAGAGAGAGTCCCTCTGCTTCATGAAGGGGGTCATGGACGAGTGCACACACATCGCCAACTTCTCAGTGCCGGTAGATCCCAGTCTGATCATCATTGTTCAGGCCCGGGAGGACGCGTACGTCCCTCGTACCGGTGTACGCAGCCTGCAGGAGATCTGGCCCGGCTGTGAGGTTCGCTACCTGGGAGGAGGACACGTCAGCGCCTACCTGTTCAAACAGGCCATCTTCAGGAAGGCCATTTATGATGCCTTTGACCGGTTTGTTCAGAAGTATCCTCTGCTATAGCCACGGAGAACGCTGAATATACTGTTATCCAGCAGACTGAGCGAAGACCTCGTAACTCCGGAACTAGCCGTGTGGTGCTACTGAAGACTGACAGCGAGTGTAGTATTTACAGAAATAGAGTATTTTGATTATAGAGATTTATAAACTGTGCTCTTATCAGTTCACATCGTTTAAAACGCCAACCAACACCAGACCTCTCAGATCACCGTCTGCATACCTGCGCTGCCTTTCACACTGTCTGTCATTACTGAAGCACATTTCACTTACAGTAACTGCACCTCAAATCACTGCCAAACCTGAGGTATCTCATCATTCTGCATCATGTGATCGTATTTATAATTGaattgtattaataataatgacgACTCTAAATCGGTATCATCCTTCCCAATTGTGAACACTTGGcctaatatatataaagatataaaaagtCCTTCATGTCTCTGTTTCTCCactcaaaaataataaagactGACCTGAGTTGACCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20261 lncRNA downstream 1064 32042341 ~ 32045045 (-) True G15078
TU20251 lncRNA downstream 5879 32033051 ~ 32040230 (-) True G15074
TU20256 lncRNA downstream 5879 32033051 ~ 32040230 (-) False G15074
TU20253 lncRNA downstream 7544 32033051 ~ 32038565 (-) False G15074
TU20235 lncRNA downstream 51047 31994633 ~ 31995062 (-) True G15063
TU20215 lncRNA upstream 13990 32069162 ~ 32086925 (-) True G15049
TU20216 lncRNA upstream 66104 32121276 ~ 32133782 (-) True G15050
TU20275 lncRNA upstream 292178 32347350 ~ 32348794 (-) True G15090
TU20280 lncRNA upstream 395186 32450358 ~ 32450563 (-) True G15095
TU20460 lncRNA upstream 509190 32564362 ~ 32621435 (-) False G15206
XM_007245601.3 mRNA downstream 50597 31973592 ~ 31995512 (-) False rnf44
XM_022676341.1 mRNA downstream 55461 31973592 ~ 31990648 (-) True rnf44
XM_022676347.1 mRNA downstream 55468 31973592 ~ 31990641 (-) False rnf44
XM_007245599.2 mRNA downstream 87653 31955606 ~ 31958456 (-) True higd2a
XM_022676298.1 mRNA downstream 107301 31880794 ~ 31938808 (-) False pdlim7
XM_022676379.1 mRNA upstream 18994 32074166 ~ 32119158 (-) True dgkq
XM_022676958.1 mRNA upstream 67050 32122222 ~ 32159963 (-) True nfkb1
XM_007245610.3 mRNA upstream 105647 32160819 ~ 32172940 (-) False LOC103039786
XM_007245609.3 mRNA upstream 105647 32160819 ~ 32172940 (-) True LOC103039786
XM_022676418.1 mRNA upstream 567009 32622181 ~ 32638918 (-) True polr2b
TU19927 other downstream 990606 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 1122162 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 1122860 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 1153461 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 87556 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 758902 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 758902 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 758902 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 2079420 34134592 ~ 34136732 (-) True G15497

Expression Profile