RNA id: XM_007258873.3


Basic Information

Item Value
RNA id XM_007258873.3
length 3676
RNA type mRNA
GC content 0.50
exon number 9
gene id nlrx1
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23928815 ~ 23947378 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAGGAAGTGTGGGTGCTGTCAGGCTGGACTGAACGATCGCAGGGAGacatttctctgtgttttagtgACTGAAATACAACAACCTGACTGAAGCTTCGATGAGATAATGCTCAGTTATTGgTGGGGTCTGGAAGGAGAACAGAATGTGGAGATTTGGGAGGACGACCAGAACAGGAGTTCTGAAAAGGACAAGATCCTGTGGAGCTCAAAAAGACAAGCTCCAAAAAAAATACCCAACCTTTACACAGAGAAGGGCTAATTTAAGTCTTCCTCCAGTCGGTGTCTGTCATGCCAGAAAGACTGGGCCATTCTTATTTCCTGAGTGGATCAGTCTCTTTGGAAGTTCATGGAGTTCTTCATCCTGTGCCGTGAGGTTGTATTGTTCTGGCGCATCCAACACAGATCCCATAGAGATCCACAAACACAAGTTAATGCTGTGGTTTAATCACTTACCTCAGGAGGAAAAGCAGTTTGGTGGGTACTTTTCTCCTGAGACCATGCACGTAGAGCCACTCATCCTGGAGAAGCGCCCGGAGGAGGGTGAAGGCTCTTCCATCAGCCCGTACAGGGAAAGTGCTTCAGTGAGCATATCTCCCACAGTGGATCAGCTCTTTCACCTCAGTCAGAGCGAGGAACATGGCCGAGGACTCAACGTGCTGCTTTACGGGGCCGTCGGTACGGGGAAGAGTACGGTCGTTCGTAAGCTGGTGTTGGACTGGTGTTCTGGATCAAAGCTCTCCCAGTTTAAACTGGTGGTGCCCTTCTCTTGTGAGGATCTCTGTCGTTCGTCCAAACCCATGTCCCTCAGGGACCTTGTGGGCAGGAAGTACATGCACCTCCGCAGGACACCGTTTCTCAGCGGAGAGGGAGACCAGGCCAGGGAGGTTCTCTTCATCTTTAACGGCATGGAGAAGATGAAGTTAGACTTTAGGATTGGCTCCAGTGAACTGTGCAGCGATCCTAATGAGGTCCTTTCATCAGAAGCTGTTGTTGTGAACCTGCTGAGGAAGTACCTCCTacctgagGCCAGCATCTTGGTCACCACCCGCCTGTCCGCCGTGGATCGTATCCCTAAGAAATATGTGGGCCGCTACGCTCAAATCTGCGGCTTCAATGACCCTGATCGTCAGAGAGCCTACTTCACCAGCAGACTGCTACTGCAGAGTAGAGGGAAGCCGGACAAGGAAGCAGAATCTTTGATCGAGATGCTCTACCTCAACCTGCAGCGAGAGAGCCAGCTAGCAGCAGCCTGCTTTTTACCCTCGTACTGCTGGCTCACCTGCGCCACCCTGCATTTTCTGCACTTTACTGACGTCAAGGCACCTATTCGCACTCTGACTGGTATCTACACCAGCTTCCTTAGGCTCAACTTTGGAGGAGAGGTGATGGCCACGGGAAGCATGTCTTCTCAGGAGCAGCAGACGTCGCTGATGCTGTACGTGGTTAGAACTGTCGGGAAACTGGCTTTCGACGGGGTCACCAGTAAGCGTGCGTCCTTTTCCGAGAGTGATCTGGAACAGTGGATTGGTGGTAAGACCAAAACCGACGAAGAGCTTCGGCAACTGGCTGTGTTTCGCACGGACGTACTAGACTTTTTCCTTGTGCCTTGTGTAGAGTATAATAGAATCGTTACCGAATCCAGCGAGAAACGGTACGTCTTCGCTATTCCAGCAATGCAAGAATACCTGTCTGCCCTATACGTCGTTCTTGGGGAGAACAAGAGCGCTTTAGAGAAAGTGACCAAGGAAGTATCGGACATCGTCGGACAAACCAGCGAAGACCTTTCCAGCATAATGAACATTCTCTCCAAGCTCATACCTTTCAGGATCTTTGCCATTTTCAACCTATTAAAGCTCTTCCCGAAACTTTTCGACCGGCTCAGCGCCCTCAGCAAGGGTCGCATCGCCAACACCATGGCTGCGGAGATGTTCCGCTCGGAAGACAGCTACAACGAAGACGTTCTCGATCAAGTTGAGCAAAGTTTACTAGGAGTTCAAGGCCCGCAGCTGAAGCAAGAAGCCGACACCAAGTCCTTCGAGTTGTACCCCATCTTTATGGGAGGGCTCCTTCATTACGGCAACCGAAGGCTCCTGGACCAGCTCGGCTGCGACATCAAGAGCACCACCGTGGCCCAGATCACCCGGACCCTGAAGAAGCAGCTGATCAAGGAGAGCCGCAAGCAGCAGCCCGCCACAGAGCTGATGGACCTCCTGCTCCTGCTGTACGAGTTCCAGAACCCCCGGCTCACGAGTGAAGTGCTGAAATCCGTCAAGGTGGTCAACCTGTCCACTGTGCGCATGACCCCACTCAAGTGCTTCGTGCTGAGCTCCGTCCTGGACTGCACACCTTCCAGCTTCCTGCTGGACGAGCTCAACCTCTCCTCCTGCCACATTACTCCAGACCTCCTGAGCATGCTGTGGCCTGCCTTCCACAACACACACTGCCTCAAcCTGCAGTTTAACCGCCTGGATTCAGAATCCTGCATTCTGCTTCGAGATCTGCTACTAGAACCCAACTGTACagttaaaacattacaCTTGTGTGATAACCTCTTATCAGACAGAGGAGTCACTCATCTGCTGGATGCTCTGCCTGGTAACAAGTCTTTGCAAAAGCTGTCTTTGATGCACACTGGTCTGGGAGATGGCGCTGCGTTTGAGTTGGCTGAAAGGCTCAGTCAGCACTCTGGATTACAGGAGCTGAATGTGGCGTACAACAACATCGGAGACAGTGCAGCTCTCGCACTGGTCGATGCATGCAGAGAGCACCCGACCATTCACACAGTACACCTGTATCTGAACCAGCTGACGGACGTAGGGAAGCAGTCACTGCATGTTCGTGGGGTTCCTCAGGAGAAAAATGGAAGACGGGTGAAGGCTCTGGCTTCTGTCACTGAGGGCTCGGACATCTCAGAGGACTGGCACCCCATCCTCAGCGTAATCGGGAAGAACTCCCTTTCCTGGGAGAGGGAACGCATACGGGAACAGCTCCTGGTCTTTCTGAAGGATCTGGAGTGGGGCCGCAAGCAGAACCAGAGCTTCTGGAAGAGGCTTCACTTCCACAGAGTGGAGAGGATGGTCAGGCGGACCCTCCGCATGCTGGAGAAAGGGAGCGCCACAGGAACCAAACCTGTTACTAAATGATGGGACTGATTTACTGTACTCAGGTGATTTATAGGTCAGTTCCTTCTTTATGGTAATAATTTGTGTTTGTTCATGTTGGAGAGATACTAGGctttattgttgtttatttgtgtgatgcTGTATTTCATAGACATCATAAAAATCTCATTTTGAGACAGTGGATTCATGTGAAATGCAAGAAATGATGGCAATATATGATATTATCAAGGTAGCAACATCAAATTCATTTCCTGTCCGAGCATCGTGTCTAAGTAAGCAGCATTTCATTTTATACTTGGTGGCTTAAACTTGTTTCATGCCAAACTAACAGGAATGGTTTATGAAAAGAAGCTCtttttggtttatattaaataataatggaGAAAACTACGTAAATATTGTAGCATATTGTGGTTGAGATGACAAGAACAGtgttattaaaacattacattacagactGACAGACTGACCAAGTAAAAAATACTACCAAGTCAAGTAGTATTCAACATGCACGATATGAAACTAAAGGATTAAAGTTACctgcatattaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17907 lncRNA downstream 15851 23915713 ~ 23916288 (-) True G13327
TU17905 lncRNA downstream 29086 23896919 ~ 23903053 (-) True G13325
TU17890 lncRNA downstream 160173 23771648 ~ 23771966 (-) True G13317
TU17881 lncRNA downstream 177649 23753551 ~ 23754490 (-) True G13311
TU17876 lncRNA downstream 179620 23750470 ~ 23752519 (-) True G13307
TU17913 lncRNA upstream 41557 23988935 ~ 23989467 (-) True G13330
TU17915 lncRNA upstream 45341 23992719 ~ 24071966 (-) False G13331
TU17914 lncRNA upstream 52706 24000084 ~ 24019447 (-) True G13331
TU17926 lncRNA upstream 161274 24108652 ~ 24145236 (-) True G13341
XR_002650656.1 lncRNA upstream 530340 24477718 ~ 24486728 (-) True LOC111193726
XM_022675312.1 mRNA downstream 4763 23909411 ~ 23927376 (-) True LOC103036322
XM_022675259.1 mRNA downstream 37064 23859753 ~ 23895075 (-) True ube4a
XM_022675334.1 mRNA downstream 78841 23790731 ~ 23853298 (-) True LOC103035686
XM_022675250.1 mRNA downstream 156823 23767027 ~ 23775316 (-) True c1qtnf5
XM_022675241.1 mRNA downstream 207371 23650417 ~ 23724768 (-) True LOC103035063
XM_022677939.1 mRNA upstream 620213 24567591 ~ 24687178 (-) True brip1
XM_007258876.3 mRNA upstream 742697 24690075 ~ 24699460 (-) True ppm1d
XM_007236781.3 mRNA upstream 1039688 24987066 ~ 25003911 (-) True pgm2l1
XM_022675374.1 mRNA upstream 1059614 25006992 ~ 25038802 (-) True LOC103033355
XM_015602314.2 mRNA upstream 1103582 25050960 ~ 25056101 (-) False spcs2
TU17900 other downstream 23368 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 128321 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 378169 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 378169 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 1937388 21993807 ~ 21994751 (-) True G12767
TU18307 other upstream 1526356 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 1777535 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 2059864 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 2730903 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 2882643 26830021 ~ 26833598 (-) False fam109a

Expression Profile