RNA id: XM_015600779.2


Basic Information

Item Value
RNA id XM_015600779.2
length 1997
RNA type mRNA
GC content 0.43
exon number 5
gene id pih1d2
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20902276 ~ 20908807 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTGCAGCTTAGAAATGTAAGTATGTATAAATGAGGATTCAGCGCCCTCTAGTGGGCAATGTGGTTGTTACAGTGGTTACAGTGGACTCGTTGCTATTGGCAACAAGTAACACTAACTGCAGGTCAGGCAGCTGTAGCGAGTTAACGCTGGAtagtaacttttattttgttgtttttctgttattattaggCTTACAGCATATAAATAACTGTATTTGAGACTAGTTCAGGTTCGCTAATTTAATGTAGAGTCTTGATAGGTAACGTATTCCTGCATTATCGTGtctaaaagctgtttttagttatttatctaTAGGAAGGTTTAAGCTCCCTTCTAATAAAGCTGTTAACCATGGAGCAGAATGCTGTTCTTCAGCAGGTCAGCCAGTTCTGGTCTATTTTAGACGACATGTCTCAGAATAATCCTGAAGCCTACAGGACGTTTATTCAGCGGCATCTACGAGAGGGAGCGGACTGTTTATCCCTTCCACAGCCGCACTGCTGCATCAGCACTTCTATACAGAGGCCAGAAAAGggaatactgtatgtaaatttgtgtggATGGAAACGAGTGCCTGCACCCACCTCTCCTACTCAGCCCATTCCTGTGTGTGGTGGAAAACTGGAAACTATTAAGGAAAAGAATGaaaattaTTCCATAGTGGAAGTGGCATTTAATCCTGAGGTTCTTCAGAGGGCTGAGGAAAACACACAGGAGAAGGAGCAGATCCATCTACTGGCTTTGAGCTTcatacagcagcagcacaaactCAGTCTGTCTCAGCAGGTCATGATCACTAAAACCAAACTAAAGGGCAGCGTGCAGAATATGATACGCCGGCTTacaccacaacaacaacaagacaAATCCAGCCCCTCCAAACCACTAACAGAACCTGCCTCTTCACTTCTACAGCAGATCTCCTCTCTGAGAATGGAAGAGAATAAAGAGGACTCCAGTATTCAGCTGAGTGTGGGACAGGAGGAAGGCAAGGCTAAGTCTGGCCTGATTGAGGTGATCTCCAGTACTGATTCATCCAAACCCCAGCAGCCAAAACACCAAATCACCGTCTGTTCTGAGAGCAGCGACTCGAGCTTGATCTTAAAGCTGAATGTGGAGCTTCCAGGAGTTTGCTCTGTCTCCCAGTGCCATCTCAGCATCACCCAGGATGATGTTCTGCTGGAAGTGGATGATATGTATTATCTTCATCTTCGGTGGCCTGAATCCGTCAATGAGGAGACTTGTTGTGCAGCATTCCACAAAAAGAAACACATGCTGATTGTTACTGCTGATTTACTGTAAACGACATATGAATATTCTCAACAAACTGCACTGACTCTTCTACTGCTTCATGGTAAGCTGATGGCAACCTTTCACAGGACAAGCAACAAGACTCACATCCCCTTTATCCCATCCCATCAttcaaaaaattataataaaataaaaaagggcacCAACACAAGCCCAAACCATTATTGATTCACCCCAAGCATAACAGTTAGAGATGGGTCCTAAATATAACCTTCTGCACCTTTTTCCCCAAACCTACCCTAAGCATTTTGTATCAGTCTCGATCAGATTTATTTCTTAGAAAACCTCTGATGCTGAGTTTTGAGGATGAGCATACTAGAACAGTTTCCTTTCTATTACTTTTGCAGGAAGGTCATATTTCTGCAGATATCACTGCATAGTAGAACAGTGCAGCACCACTTCAGAGTCTAAAGCCCTAACAGGACAcgattagtttttcagggggacgtctgtgaagaATATTTCCCATTTCGGACTGtaaatgaaaaaacaggaggaccagtgagtttttttttaggctgtttttctcggtcacatgacatcacgttcagcagctcctccatttccactcactgttgtggtTTTACGTAAATCTCTGTGAAAACTGTggtgtgcccaaagtgtaattacagtgcacagcagtggacaaatagctattttattaaaggtgaggagacgaaactca

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16239 lncRNA upstream 134877 20727543 ~ 20767399 (+) True G12038
TU16240 lncRNA upstream 146996 20728643 ~ 20755280 (+) True G12039
TU16235 lncRNA upstream 191598 20671034 ~ 20710678 (+) True G12034
TU16228 lncRNA upstream 282299 20562773 ~ 20619977 (+) True G12027
TU16224 lncRNA upstream 372839 20529047 ~ 20529437 (+) True G12023
TU16389 lncRNA downstream 83063 20991870 ~ 20992084 (+) True G12165
XR_002650607.1 lncRNA downstream 147946 21056753 ~ 21162746 (+) True LOC103030577
TU16398 lncRNA downstream 148057 21056864 ~ 21089666 (+) False LOC103030577
TU16418 lncRNA downstream 205048 21113855 ~ 21116020 (+) True G12187
TU16477 lncRNA downstream 262298 21171105 ~ 21171318 (+) True G12242
XM_022674870.1 mRNA upstream 1429 20852182 ~ 20900847 (+) False tmprss5
XM_022674875.1 mRNA upstream 1429 20887489 ~ 20900847 (+) False tmprss5
XM_022674864.1 mRNA upstream 1429 20889003 ~ 20900847 (+) True tmprss5
XM_022674881.1 mRNA upstream 15809 20884548 ~ 20886467 (+) True LOC111193555
XM_022674888.1 mRNA upstream 23245 20876909 ~ 20879031 (+) True LOC111193556
XM_007231431.3 mRNA downstream 42536 20951343 ~ 20960236 (+) True LOC103030893
XM_022674920.1 mRNA downstream 43705 20952512 ~ 20960236 (+) False LOC103030893
XM_022674932.1 mRNA downstream 57465 20966272 ~ 20990064 (+) True LOC103033739
XM_022674940.1 mRNA downstream 85299 20994106 ~ 21053855 (+) True LOC103033418
XM_007229377.3 mRNA downstream 635549 21544356 ~ 21549087 (+) True nkapd1
TU15744 other upstream 1478212 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3762497 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 4941898 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 5133033 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 54242 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 57481 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 67397 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 551043 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1420912 22329719 ~ 22341513 (+) False spa17

Expression Profile