RNA id: XM_015602309.2


Basic Information

Item Value
RNA id XM_015602309.2
length 1885
RNA type mRNA
GC content 0.46
exon number 6
gene id nudt8
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25673872 ~ 25680956 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGACATGCTGGTTGAGGAGAAGGATCTGTGGATGTAGATCCTGAAGCACCTGATGGAGCGTCAGAAGTACAAGCAGTAGGCCTTTCCTGCTCCTGCACTCTCAGTTTCTTCATAGCTTCCATCAGCATGTTATTCCTGCCCAGAACGGGCCTGGGTTTGAAGACCTGCCTGCACTGTGGACAGGAGTAGATACCTTTGGCAGCAGATTTATCCCAGTGCTTCTGGATGCACTTCATGCAATGGGGCACGGTACAGATGTATCTGGCAACCCTAGGCAGCAGCCGGAATAGCTCGCTGGACGTCAGTCCTGTTCAAGGATGTTTAGAAGTCCTCAGATTCTGACTTCAGCATGCCTCCTTGGGACTCATCGATCACTGCTTAAGACAGTCAAAGACTCACAAAAGTCAACTTTCAAAAGGACATTGTgcagtacctcacacttacagCAGGTTGACAATGTTAGCAGAGAAAAAGGAGATCAAGAGGAACCTCATACTTCAGAGCCACAGAAcagtaatcacatttttcacacaTCACTTTGCCCTGTTAACATAAGCTGCTCCATCACACCTTTAGACCCTTACCAGAATGTGACTCACCGGGGAGGGCTGCTAGACGATGTCACTACTGACATCTTAGCACATTGTTCTGGAAATGCCACCCAGCACTACTCTTCTGAAACCACTTTATCAGAACATTTCATGTTTAGGGACTCTGTTCCTAACAAGTGCCTTCTACTTGAAAAGCAAAAGAACAAGCACAGAAGTTCAGTGCATGAGAGGAGAACGCACATACACACCAGTATTAACAGTCAGGTATACCACACTGTGATAAACATCAATGGCAGTATCAGTAGGCCATATGTGTTCAGCAGAAGTCTCTGGACTACAACCCCAGCAACATGTAGCCATTGTGGACTTATAACAACCCAGACCTGTGGTTTGCACCACAGTGTTCCGCACCAGGCCACTCTTGGAGACTGTCTGTCAGCTGAAAATGAGACCCGCTGTAGAAATCGCCTGAAATCCAACTCTGCACTGtatgagaaagaaaaggagaagaaCAGGGCGGCTGTGCTGGTGTCTCTATGTACAGTACGGGGAGAACCTTCCTTTCTCTTTACTCTGAGATCGAGTAAACTGCGTGGAAGACACAAAGGAGACGTCAGTTTTGCAGGGGGAAAGCGAGACCCTTCTGACAGGAATGTTATAGACACTGCACTGCGGGAAGCCAAGGAGGAACTGGGGATTACTGTGACAGAAAATGTAGTGTGGGGGGTGCTGAAGCCCCTGCATGATATGTCAGGAATGATGATCGCTCCGGTGCTAGCTAATCTTGGACCAGTGGAGGCTCTAACATTTCGTCCCAACCCAACCGAGGTTGAGGAGATCTTTACCCTGACTGTAGCTCATTTATGCAACCCACAGAACCAGGGCTACACTAATTTCCGCAACAATGACCGTCATGTCTATACTCTTCCTGTGTTTCACAACTCTAAGTACAAAATATGGGGCCTGACGGCAGTAGCCTTGGATCACACGCTCAAACTCATTACGCCGGTTTAGCAGCTCCACATCCTGATTAAACAACAATCAAGTCTGTGCTGTGAATGAGTTttgcctttgtgtgtgtgtttttttgtacccTTGATGCTGGGTTCACGACCCCTCATAACGAGAAGAAGAATCAGGACTAAGACTTCACATCATGTTTGTTATCTGATAATCAATAGTctatcaaataaattaaatttgtgTTCCTGTGCTAAAGGAACATATGAAAGCATAGCACAGTTTCCCTTCTgtttaatgaatgaatgtttCATGGTAATAATATGAAtggcaataaaaacaaaataatttgtttCAATTGTTTGGAAACAAA

Function

GO: NA

KEGG:

id description
K18665 NUDT8; nudix motif 8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18323 lncRNA downstream 104414 25514715 ~ 25569523 (-) False LOC111193737
TU18327 lncRNA downstream 149641 25523787 ~ 25524296 (-) False LOC111193738
TU18321 lncRNA downstream 153736 25514715 ~ 25520201 (-) False LOC111193737
TU18319 lncRNA downstream 153805 25514715 ~ 25520132 (-) True LOC111193737
XR_002650681.1 lncRNA downstream 153816 25516786 ~ 25520121 (-) False LOC111193737
TU18382 lncRNA upstream 74985 25755941 ~ 25758034 (-) True G13685
TU18477 lncRNA upstream 290449 25971405 ~ 25975983 (-) True G13769
TU18473 lncRNA upstream 321375 26002331 ~ 26006680 (-) False nars2
TU18522 lncRNA upstream 630479 26311435 ~ 26311750 (-) True G13801
TU18745 lncRNA upstream 989163 26670119 ~ 26698793 (-) True G13960
XM_007236756.3 mRNA downstream 13474 25643346 ~ 25660463 (-) True LOC103046310
XM_022675494.1 mRNA downstream 149334 25523832 ~ 25524603 (-) True LOC111193738
XM_022675398.1 mRNA downstream 448122 25219209 ~ 25225815 (-) True LOC111193727
XM_007236780.3 mRNA downstream 601419 25062687 ~ 25072518 (-) True rnf169
XM_007236779.3 mRNA downstream 617962 25050960 ~ 25055975 (-) False spcs2
XM_007236774.3 mRNA upstream 147967 25828923 ~ 25905572 (-) True maml2
XM_007236775.3 mRNA upstream 231643 25912599 ~ 25998864 (-) True gab2
XM_007236776.2 mRNA upstream 321410 26002366 ~ 26015063 (-) True nars2
XM_022675663.1 mRNA upstream 367905 26048861 ~ 26299928 (-) False tenm4
XM_022675644.1 mRNA upstream 367905 26048861 ~ 26299928 (-) False tenm4
TU18307 other downstream 179485 25473734 ~ 25494452 (-) True G13630
TU17900 other downstream 1765166 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 1870119 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 2119967 23539257 ~ 23553970 (-) False LOC111193708
TU18373 other upstream 43957 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 326286 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 997325 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 1149065 26830021 ~ 26833598 (-) False fam109a
TU18929 other upstream 1218049 26899005 ~ 26902713 (-) True G14113

Expression Profile