RNA id: XM_015604411.2


Basic Information

Item Value
RNA id XM_015604411.2
length 2430
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC103030662
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21496598 ~ 21511206 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GCAGTGGAGTGGAAGCACCAGCTCTGGTTTCTGTGTCCTCAGTGAGGAGAGGGAGCTGGAGGCGGAGGCTGAAGAGGTGGAGCCCTGAACTCAACATGTCTCAGGACTGGGGGATCTGCCGCTTCTtGCCTGTACTGATTGTACTGGTCGTAGTCTTCAGTGTAAATGGATATACAGACGATCCACTTCTCGAATGCTTGCAAGACCCTGACTATGAGGAGCTTTATAAGATAATGAATGAGGGTCTTCCCCCTACAAAGACCCCTCACAGTGTGGGGATCATCGGTGCAGGAATCGCTGGACTCACTGCAGCTAAGATACTGGAGGATGCTGGACATAAGGTTACAATCATAGAAGCTAGTGATCATATAGGTGGAAGAATCCAGACCTACAGGATGAAGAAGGAGGGCTGGTACGCTGAACTTGGTGCCATGAGGATCCCATGGTTCCACAGGATCCTCATGTCATTTGTGGCAAAGATGGGCCTGAAACTGGATCCTTTCATTGAAGAAAACATTAACACTTACTATCACGTCAACGGTTTGCTTGAAAAAACCTACAGAGTGAAGGACAATCCCGATGTGCTGAACTACTCCGTAAACGAACACGAGAAGGGGAAATCAGCCAGTCAGCTGTTTGATATGGCGTTGTGGAAGATTAAAGATGATGTGAAGAGGTACGGATGCAGTAAGACGATGGCGAAGTATGATTCATATTCTGTTAAGGAGTATTTAGTAAAGGAGGGTAATCTGAGCCGAGAAGCTGTTCGTATGATTGGAGACATACTCAACGAGAACAGCTTCTTCTACACTGGTCTCACAGAGACACTCTACATACAGTCCGATATCAACGATAATACTAAGTATTTTGAGATTCCAGGTGGCATGGATCACATACCCAGAAAATTTTATGAAGTACTCAATGCGACAATTCTGCTCAGATCAAAGGTCAAACGCATCACTCAAACCGAGAGTAATGTGACGGTTTCATTTCAAGACTGGCGAAACCTCTCCGCTTTGACCAACTTCACTTTCGACTACGTTCTGGTGACGGCTACAGCCAAAGCTTCACTCTTCATTGATTTCCAGCCTCCGCTATCAGTCCGGAAGATGGAGGCTCTGCGCTCGGTGCACTACGCCAGCTCCACCAAGGTCGTGCTGAGCTTCAGTGAGAGGTTCTGGGAGAAACAAGGCATCAAGGGTGGAAGAAGCATCACAGATATGCCTTCACGCTTCATTTACTACCCCAGCCACAGCTTTCCTGGAACAGGGGGCGCCCTTTTGGCTTCATACACCTGCTCTGATGATTCCACGCTCTTCCAGGGGGTGCCGGATGATGAGCTGATGGCCATGGTGCTTAATGACTTGGTGAAGATCCATGGGGAGGGGATCCGGCAGCTCTGTACTGGAGGTGTTGTAAAGAAATGGTCTCTGGATCCTTACAGCCATGGAGCGTTCGCCATCTTCACTCCCTACCAGGAGAGTCACTACTCTAAAGATCTGTTCCAGAAAGAGGGGAGGATTCATTTCGCTGGAGAGCACACAGCCATGCCACACGGCTGGATTGAGACGGCCATGAAGTCTGCTCTCAGAGCTGCTAAGAACATTAATAGTATTGAAGAATGAAGACGAGACTGAATAAAAATTGTTTTCACATTGCTGCTTTATAACAGcgaacattttacatttcatcaaatcaaatcaaattgatTTATATAGAGCTTTTAACAAGACTCACAAtcgggggacccatcctcctttggtcgAAACTGCACGTTAAATGTTGAGTAAAGTTCACTATACAGCCACATAGGTCTGTTTTGTTCAGGTGTACTgacataataatattaatagtaataatagtaataggtAATAGTAATACAAATACTACTGACTACTAAAAACTAatgattagaataaaaaaatgctagttttagcttttatttgtttttttattaacactgattttaaaaatacCATAAGGGCCTTAATATTGAAAGACAGCCATGTCTGCATTTTGCCATTTCTGCCACACAGTGATCTGTTGAGGCTGCATTTCGTTcagctagtttttttttttctttttttttacatttcatacatATGTAAGACTGTATTCTGTGCATTTACTACAGTTTAAGactatttaaaagttttatatgtaaataaaaagtacTAGTAAAAGTGTGGGTAGGATAGAGTAATGACAAAtatagtaattaagtaatttaggTTTGCTGTGTAATGTTTTTCTACCTTTTtatgtatatacatttaagCTAGTTTGTATAAATTCCTTTTATACGTTTTACAGACAATTTTAACTTGGTAGAAAATGTAGCTACACATTTCACTTAAACTGACTGATTTTGACTGACTattgtgcaaatgcacacattttGGTTGCTAACCAGcacatgttaaataaaaa

Function

GO: NA

KEGG:

id description
K03334 IL4I1; L-amino-acid oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650613.1 lncRNA downstream 179893 21314598 ~ 21316705 (-) True LOC111193576
TU16594 lncRNA downstream 179921 21312672 ~ 21316677 (-) False LOC111193576
TU16435 lncRNA downstream 534839 20960778 ~ 20961759 (-) True G12203
TU16347 lncRNA downstream 567381 20840206 ~ 20929217 (-) False G12131
TU16346 lncRNA downstream 652342 20840206 ~ 20844256 (-) True G12131
TU16665 lncRNA upstream 21274 21532480 ~ 21538280 (-) True G12400
TU16671 lncRNA upstream 58752 21569958 ~ 21570232 (-) True G12405
TU16660 lncRNA upstream 63752 21574958 ~ 21578572 (-) True G12397
TU16659 lncRNA upstream 70356 21581562 ~ 21599012 (-) True G12396
TU17103 lncRNA upstream 174006 21685212 ~ 21688855 (-) True G12739
XM_007229376.3 mRNA downstream 5476 21483571 ~ 21491122 (-) True LOC103030984
XM_022675004.1 mRNA downstream 14194 21474412 ~ 21482404 (-) True sdhd
XM_022674978.1 mRNA downstream 31166 21457131 ~ 21465432 (-) True bco2
XM_022674963.1 mRNA downstream 46403 21317501 ~ 21450195 (-) True sorl1
XM_007231430.3 mRNA downstream 277501 21213233 ~ 21219097 (-) True LOC103030049
XM_022677703.1 mRNA upstream 6801 21518007 ~ 21530745 (-) True LOC103034230
XM_022675039.1 mRNA upstream 98948 21610154 ~ 21699039 (-) False LOC103031934
XM_022675044.1 mRNA upstream 98948 21610154 ~ 21690408 (-) True LOC103031934
XM_022675047.1 mRNA upstream 195007 21706213 ~ 21720284 (-) False LOC107197401
XM_022675046.1 mRNA upstream 195007 21706213 ~ 21720284 (-) True LOC107197401
trnak-cuu other downstream 521444 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 1414156 19998440 ~ 20082442 (-) True G11917
TU16077 other downstream 1694385 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 2257621 19238906 ~ 19238977 (-) True trnap-cgg
TU15837 other downstream 2385026 19108713 ~ 19111572 (-) True G11719
TU17143 other upstream 482601 21993807 ~ 21994751 (-) True G12767
XR_002650646.1 other upstream 2028051 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other upstream 2030128 23541334 ~ 23553970 (-) True LOC111193708
TU17895 other upstream 2273265 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 2392977 23904183 ~ 23908771 (-) True G13322

Expression Profile