RNA id: XM_022671639.1


Basic Information

Item Value
RNA id XM_022671639.1
length 2084
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC111193013
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 514280 ~ 528000 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAACTGgcattgtattgtttttacagTAAAGAAAGTCCAGAGTCCAGAGGAGCGTTCTGATTCCATCTGCAGTGAAACCGGACACAATGGCACAGCTAGATCAACTTCAGACACGACTGCAGGAGTACATCTCAGAAACATTTGAAGAAATCAGAACAGTGAAAAACTTCTGTGACAGAGTAAAACAATGGATTTATCAGAGGATGGTGGAGTTATTAATAATGAGAAATATCAAAGAGCGTGCAAACACATTCTTAGGCCGTTTCAGAAAGCAGaagctggaggaggagctggGGGAGGTTCTGAACAACACTCAGGAGGGACTGAAGATTCTCCAGCCCTTCCTGGATGCAGTAGAAAGGCTAGCAGTCACCTCACTGCATGTGTTTAAGGAGGAAAGTGTTCAGTTGGAGGGGGTGAGCTCTGCAGCTGTACGATCAGTGATCTTCACTGCCAGATTCATCTCTCCACTCCTCATCCACTTCAAGAGAGATTCAAGAGCTTTCTTCATGCCCAACCTCGACAATGTGGAGGTCCTGATCTTCGAGCTGGAGAAATACATCCTCCTTACCCAACAGATCTGCGGAACAATATCCAAAAACACACCAGGATTAAAAGGATTAAAGGAGAAACATTTATGGAAGTTCAGTTTCACTATGAGTGGATCTATGATAAGCATGATGGACCATTTGAGCAAAATTAGaatGGACAAGTCATTCCGGCTGTCCTTCCTCTTTAAAGAAAATGCTCAGCGCTTTATGGAGACCTACAGTGAATGTCGTCCTCGGATGCTCAATTTCCTCTCAGGTTTAGAAGATTCTGCAGTCAAGCTGGACAGGATGAAGATGGTATCCAGCATCTCCACTGTGGCGGGCAGTTCAGTAGgtgctgctggaggtgttgTGTCCATTGTGGGCTTGGCTCTGGCTCCTGTCACTGCAGGAGCATCACTGACCCTCACGCTCACTGGCGTTGGGCTTGGGGCCATCAGTGCAGTCAACAGCTTAGCGACAGGAGTTACTGAAATTGCAGTCAACAAACATCAAGGGGGGAATGCCAACAACATCTTCCAGAAATTCATGGAGGATGTTCAGGCGATTCTAGACTGCATGAATCAAGCAGCTAGCACTGAAGGTCCAGTGGTACAGTATGATGTAATAGATACAGCATTTGAAGCTGGGAAAGTGATAGTCCGCTCTGGAGCAGTAGGCAAAGGTATTGACGCCCTTGTGGATGGAGCTTCAGCTCTGAAGGCTCTAAGCAGTGAGGAAGTGGCTATGAGTGCAGTCAGTTTGGGGCTTCAGGAGGCTAAAGCTGCTCGGAGCATCCCCAACCTGGCTGCAGACCTGCCGGATATCGGGCAGCTGGCAAAGGGCACTCCTCTGGCTCTTTCAAAAGCAGCCAGAGCTGGATTTATTGGTCTGAATGCTCTCTTCATCGGTCTGGATGCATTTTTAATCTGCAAGGAAAGTGTGAGTCTggcaaaaggaaagaaaagtgAAATGTCCAAGCTTCTCCGATCCAGATCGTCCCTGTGGTGCGCAGAAATATTGGGATGGGATGAAATTATTGATTATCTGTGGAAAGGGAAAGATAACTTTACTGAGAACATGAACATTTTATATCAACCACTCAatgtttgatttaaaatgtcagatttaagTAACTACACTGTTCATAGAAATGAAGAGAACACGTAGTCATCACAGTATAACGCAAAGTCAGGAAGCATAAGCGATGTGAATCAATTTCACCTGTTGGTGCGAATAAAAGTGAGAACAGGTTTTCCACAGAGGCAATAGCAAGAGAACCTCCAAAGTAGGAGTGGTCTTATTCTTCCTGACTAATTctaattttgcatttttctaGTATTTCTCGCACTACTAAGCATGAGGCAGAACTGCATTAGGTTCAGGTTACACAGGTAGTCCTGCTTCTCCAAGATGGCACATCCATATGTGTTGTTACATAAGCTTGCAGGAGATTTCTGGAAATAGGCTTTTACAggggcttgcaaaagtatttataccccttgaactGTTCCATATTTTGTcgcattacaaccacaaacataaatatttcat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9411 lncRNA upstream 99411 413131 ~ 423518 (+) True G6901
TU9405 lncRNA upstream 141989 380604 ~ 380940 (+) True G6895
TU9376 lncRNA upstream 323149 199397 ~ 199780 (+) True G6876
TU9346 lncRNA upstream 323965 188135 ~ 198964 (+) True G6851
TU9449 lncRNA downstream 16434 544434 ~ 574624 (+) True G6928
TU9450 lncRNA downstream 16622 544622 ~ 576356 (+) True G6929
TU9466 lncRNA downstream 70561 598561 ~ 599050 (+) True G6939
TU9541 lncRNA downstream 173507 701507 ~ 702320 (+) False G6995
TU9539 lncRNA downstream 173787 701787 ~ 702320 (+) False G6995
XM_022677548.1 mRNA upstream 115793 400970 ~ 407136 (+) True LOC103047457
XM_022671589.1 mRNA upstream 157213 314848 ~ 365716 (+) True LOC103034757
XM_022671575.1 mRNA upstream 249297 200963 ~ 273632 (+) True LOC111193007
XM_007260747.2 mRNA upstream 370704 116081 ~ 152225 (+) True LOC103029565
XM_007260745.3 mRNA upstream 412267 65293 ~ 110662 (+) False LOC103029038
XM_022671650.1 mRNA downstream 12319 540319 ~ 549742 (+) True LOC111193015
XM_022671653.1 mRNA downstream 26179 554179 ~ 571578 (+) False gtpbp1
XM_022671660.1 mRNA downstream 26179 554179 ~ 571578 (+) True gtpbp1
XM_022671656.1 mRNA downstream 26179 554179 ~ 571578 (+) False gtpbp1
XM_015602574.2 mRNA downstream 547982 1075982 ~ 1103227 (+) False LOC103025552
TU9412 other upstream 85541 413131 ~ 437388 (+) False G6901
trnal-uag other downstream 4771 532771 ~ 532853 (+) True trnal-uag
trnal-caa other downstream 5130 533130 ~ 533212 (+) True trnal-caa
trnal-uaa other downstream 9815 537815 ~ 537897 (+) True trnal-uaa
TU9540 other downstream 172764 700764 ~ 702320 (+) True G6995
TU9686 other downstream 812206 1340206 ~ 1345431 (+) True G7109

Expression Profile