RNA id: XM_022672063.1


Basic Information

Item Value
RNA id XM_022672063.1
length 3699
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC103029856
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3299338 ~ 3423252 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atctctatctcccTGTCCgtctttctgtttttcagtcAGTTTTCATAATGCTCCCAATTTGAGCTTTTGGTGATatgtgtataatatatgtatatgagaTCTGAATTTGGTGAGAGCCTATAAATTGGGGCACACTTGGGGTGGTCGTCCTGGTGGTGTGCACGTACCGTACGTACTAAAGCCACGATCTCAGGAGCTCGGTTTATATccatctatataaatataaagatagaCAGATGTTCTGCAGCTGCAGGTTTTTATGTAGCTTTTATTTTGGGAGCATTCGTGCTTATATAAGGACGTGCAGCCTGGTGCAGAAAATTAACACATAGATATAGACACACTacttactgtttatttataataataataatagtaatagccGAGAGacggaaggaaggaagaaaggaagaaaatcaCTATAGCTAAATAAGCATTATAACTATataagaagaagaacagagaagAAAGAAGGGAAGGTGAGAAGGCAGAAGAAAGCCCCCCAGCCGGTCAGAGGCTCGGTTAGATTTTTCTCCCCTCATCTGTCTTTCACCCAAACGCAACCATAAGGCTCCCAccgcctcctcttcctcctccccccttctcctcttcctcttcctcctcctcctcttcctcctcctcctctccctcctcgCGCCTGGCGCTCTCCCGCTTCTTCCTGGGCTCGGCGTGGTCGCGCAAAATCTCCAATATTTATTTCCTGTACGTCAAGAGGAAAGGGGGTCCCCCCTTCGTGCAATGCGGGAACATGGGCGTGTTTGACCGCGGCGTTCAGATGCTGCTGACCACGGTGGGCGCCTTCGCCGCCTTCAGCCTCATGACCATCGCCGTGGGCACGGACTACTGGCTCTACTCGCGCGGAGTCTGCAAGATCAAGAGCACCAACGAGAACGAGACCAGCAAGAAGAACGAGGAAGTCATGACACACTCTGGCCTGTGGAGGACGTGCTGCCTGGAAGgaAACTTTAAGGGAATGTGTAAACAGATAGACCATTTTCCAGAAGATGCGGATTATGAAGCTGACGCATCGGAGTACTTCTTACGTGCTGTGAGAGCGTCCAGTATATTTCCGATCCTCAGTGTGATTCTGCTCTTCATGGGTGGTCTCTGTATCGCTGCCAGCGAGTTTTACAAATCCCGCCACAACATCATCCTCAGCGCTGGGATATTATTCGTTTCTGCAGGCCTCAGTAACATCATCGGCATGATTGTGTACATATCGGCGAACGCGGGGGACCCCACCAAGAGCGACTCCAAGAAAAACAGCTACTCGTACGGCTGGAGCTTCTACTTCGGCGCCCTGTCCTTCATCATGGCCGAGATGGTGGGGGTTCTGGCCGTGCACATGTTCATCGACCGGCATCGAGAGCTCAGGGCGGGGGCGCGGGCGGCAGATTACCTCCAGGGCTCGGCCATCACGCGAATCCCGAGCTACCCGTACCGCTACCGGCGCCGCTCACGCTCCTCCTCGCGCTCCACCGACCCCTCGCACTCCCGGGACGCCTCACCGGTGGGCCTGAAGGGCTTCGGAGCGCTGCCGTCCACCGAAATCTCCATGTACACACTGACCAGAGGGGGCGACACGCTAAAGGGCAGCCACGGGACCCCCACGGCCACCTACAACTCAGACAGGGACCACAACTTCCTCCAAGTCCACAACTGCATTCAGAAGGAGCTCAAAGACTCGTCCAACACAGCCAACCGGCGCACCACGCCCGTATGAGGACGTGAGGAACCCCCAAGACCGAGAGAGAAATGGGGGACGGGGCAGACGGGTGGGCATATAGAGAACAAAGCCctcaaatattactgtattactgatCAAATTTCATATCCCTTCAGTTCTCATACTTCTTGATTACGTAGAGCTGGGAGGAtcttctgtgtttatttgaaaGGTTATTTTACATGTATGCAtgattatttttgccatttgtcATCAGGGAATCGAGCTCGCTCTGTCTGGGGTTGGAGAGatgattgggggggggggggcggacTCGGGTGGGCTCTTTTACAGGACTGGGGGGCTGTAGCTTGAGGAGCTGGTTGGGTATTTTTGTGTTCCAGCACTCCTCTTTTGGTCTTTGTTGGATGAAGATAATGaagatgatgatagtgatgataatAATGAGCTACAGCATCTCCTCAGTCCTCTACTCAGTCTTCAACATAttgatttgttcatttgttgttTTGCAAAAGAAACTGTGAAACACTTGCAGTAGGTATTTTAATCTGCAAGAACAGCCCAGTGTGCAAATAaaggtactatatatatatatattaatcaatatttatatatatatatagtactgtgcaaaagtcttAGGCacctgtttatatataaaaaagctatttatctgggttgtaagcatttatttgctcaCTAATACTCTAATATTAGACTAAATacgaattatttattttacgaATGATGATTTTATTATCTTACgttatattttgtgttggtTAAACCATTTCCATTTAGCTTTTGGCATTTGCCCCAGTCTATTTTACCAGTCACTAAAAAATCAGGTGAGCTCCTGGTGGAACCGAACAAATCCgtacagtattatttatttcttgtttatatttattctaatattgtCGAGTTAAATTGACACTTATTATCCAGGTAAATGGTTTTGAATTATTTACTTTGGTGCCTAAGGATTTATACTTTGCAcagtatgaatatgaatatatatatatatagtagtcaTTTTATAACTTATCAGAATTTCCTGAAgtgcaaaaaagcaaaaatatctaaaaaaacaaacaaacaaaaagacaaaaaaagaactaTATCTATAAAACATGAGAACAGATGCCAGGTCAGACTGGCGGGTGATGAACAGACTGAGTGATAAACAGCGGCATCAGCTGCCATTCAAACGCCCAGCTGCTAAGACCAGCCGCTGCCAGAGACGCTCGACCTTAGACGAAACATTCTATTCTTTTAAAAAGAACCTTCTCATCTTTTGCTCCGTCCCTGTTCGCTTTCTTTTCGTTCCTCGCACCTTTCAGCCGTCAGTGGAGCGCAAGAGCCCCCTCGCCAGGGCCAAAGGTCAACGAAAGACTCCGGGAACGACTGCCAAGATGCCTCAAAAAGGaaggaggagagggagaggaaaagaCGAGGACGTAGAACACTAAATAATTACTTGCTAAGAAGGAAGCAAGCGTCAGTTTAACTATGAAATACTACGAGACATGAAGCTAAGAGACTCACAACTACAGAAATTAAATGCATGCTATAAATTTACAGAAAACCTGCTCTTGAGAAACTTAAGTTTTAAAGgataacaataattataatgGGAAAAAGCAATGTTGAAAAAGTTTAATTATCAATGTTTGTGTACTCTTTTCTCTTCCGTtggttttttaatcattatttaacTCATTGTATTGATATTTGTTTGTAACGAAACCAAACAAtcgaacaaaacaaaacaactgctttttaaaatgttccgtTTTTTCTTTCTATGTAAACGTATGTGTTTCATTTCGGGAATCACGCAGCCTTAGCCATTTCCTGATTTCTTTGGGTTAATTTCAGTGTGTTGtttcaaatgaaatgaaatctaAAGGTGCCAAAACAGAATGATCCTAAACTTGGATGCATCAAGTTCTGatgaataaaatacaaaccCCAGGGGGAACAAA

Function

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:0005245 voltage-gated calcium channel activity molecular_function

KEGG:

id description
K04867 CACNG2; voltage-dependent calcium channel gamma-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10266 lncRNA upstream 35547 3259194 ~ 3263791 (+) True G7531
TU10265 lncRNA upstream 37226 3259194 ~ 3262112 (+) False G7531
TU10260 lncRNA upstream 106463 3188314 ~ 3192875 (+) True G7526
TU10251 lncRNA upstream 127765 3163133 ~ 3171573 (+) True G7518
TU10213 lncRNA upstream 154960 3140081 ~ 3144378 (+) True G7492
TU10367 lncRNA downstream 71119 3494371 ~ 3497856 (+) True G7603
TU10412 lncRNA downstream 103378 3526630 ~ 3567805 (+) True G7636
TU10413 lncRNA downstream 110119 3533371 ~ 3535093 (+) True G7637
TU10432 lncRNA downstream 143417 3566669 ~ 3572239 (+) True G7651
TU10437 lncRNA downstream 188532 3611784 ~ 3612934 (+) True G7656
XM_015601611.2 mRNA upstream 138645 3144487 ~ 3160693 (+) True LOC103027967
XM_022672000.1 mRNA upstream 163137 3106191 ~ 3136201 (+) True LOC107196972
XM_022671994.1 mRNA upstream 197341 3065275 ~ 3101997 (+) True LOC103026748
XM_007234432.3 mRNA upstream 323970 2974013 ~ 2975368 (+) True LOC103026461
XM_022671981.1 mRNA upstream 380501 2903075 ~ 2918837 (+) True LOC111193073
XM_022672131.1 mRNA downstream 149990 3573242 ~ 3587765 (+) True ifi35
XM_022677820.1 mRNA downstream 205435 3628687 ~ 3644274 (+) True LOC111194267
XM_022672150.1 mRNA downstream 218881 3642133 ~ 3656619 (+) True LOC103039250
XM_022672153.1 mRNA downstream 218881 3642133 ~ 3656619 (+) False LOC103039250
XM_015602934.2 mRNA downstream 317183 3740435 ~ 3779695 (+) True LOC103042028
TU9947 other upstream 765575 2530616 ~ 2533763 (+) False G7296
TU9779 other upstream 1240515 2050319 ~ 2058823 (+) False carm1
TU9686 other upstream 1953907 1340206 ~ 1345431 (+) True G7109
TU9540 other upstream 2597018 700764 ~ 702320 (+) True G6995
trnal-uaa other upstream 2761441 537815 ~ 537897 (+) True trnal-uaa
TU10347 other downstream 25969 3449221 ~ 3452666 (+) True G7593
TU10606 other downstream 501033 3924285 ~ 3929003 (+) False natd1
TU10605 other downstream 501136 3924388 ~ 3929003 (+) False natd1
trnac-gca_1 other downstream 723384 4146636 ~ 4146707 (+) True trnac-gca_1
trnac-gca_2 other downstream 725335 4148587 ~ 4148658 (+) True trnac-gca_2

Expression Profile