RNA id: XM_022672246.1


Basic Information

Item Value
RNA id XM_022672246.1
length 5983
RNA type mRNA
GC content 0.52
exon number 34
gene id mapk8ip3
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 3991980 ~ 4056487 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACGCACCCACACTGTAGCCTGGCTGGGCGAGCTCTGAGATTCCCTACCCACCCAGccgagaggaggaggaggacagcagcagcagcagccgcccCCCGCCGCAACATCATCCACCGGGCTGGGGTCtgtagttaacctagctaggttggttatttaaatgtcaaaaaagCTGAATTTGCCAGTATGTTGTAGGAGAAATGATTGCGCCACGTCGTGGTGATGGGGGCAGCTACTCCAGCATAATCCAGTGTATGTAAGCTATTTATTaccatattatttatttattttcttttttttatcctccATTGATTTTTTTCGCCCAGTAATGGCTGGGCTCCCGGGCTGCGGCGGCTCAGCAGCAGGTGCATCGCGGGCGGTGATGTGATGGATTCCGGCCGAGTGGGAACGGGAGCGCCGGTGACTAGTCCAGCCTCACCCGATACGGACCTAACGGAGGATTAGCTGGGTGTGAAGAAGGGGAAAGATCGGGATTTTAAGGCCGTGCTGTGGCGCAGGGAGTGGGGGGGGAGAAAGGAGAGAGGCTAGCTTAGCTCTCGGCTCCTCTCCCATCATCATCACATTCACATCTACCTAACGTTCAGccaactaactagctaacccagctaccGCTTGTCTGAATGAGGCTGCTGGGCACCCCTGGAGACACGTGGGGGCACGTCCAACTGATGACACCCCTTTAAAATATCTCTAGCTAACTACACAGTGAGCTAACCAGCTAGCTCCTGAAACCAAGCCCCCCTGTTTTATTTGGATGACTCAGAGAACCGCTAGTTAGCTCCCACAGCGCCTCCATTACTTTGGCCAGCATTTTCTTTTTGTGATTTTCGGTGGAAATCTCCACCACCGCACCTCCAGGCGAGATGATGGAGCTCCAGCTGGACGAGGTCGTCTACCAGGACGACTACGGCTCAGTGTCCGTCATGTCCGAGCGCGTCTCGGGCCTGGCCAACAGCATCTACCGCGAGTTCGAGCGACTCATCCGGAGCTACGACGAGGAGGTGGTGAAGGAGCTCATGCCGCTGGTGGTCAACGTGCTGGAGAACCTGGACGCCGTGCTCACTGAGAACCAGGAGCACGAGGTGGAGCTCGAGCTGCTCAAGGAGGACAACGAGCAGCTCATCACGCAGTACGAGCGCGAGAAGGCGCTACGCAAGCAGGCCGAGGAGaaaTTTATAGAATTTGAAGATGCGTTGGAGGCGGAGAAAAAGGACCTCCAGTCACAGGTGGACTTTCTAGAACTGCAGGGAAAACAGCTGGAACTGAAGACCAAGAACTATGCTGACCAGAtctCTCGTTTGGAAGAACGTGAGGGAGATATGAAGAAGGAGTACAATGCTCTTCACCAGCGACACACAGAGaTGATTCAGACCTACGTGGAGCACATTGAACGATCCAAAATGCAACAGGCCGGAAGCAACCAGTCAGATACCACAGGCTGCGGACggacTCAACGCAACACCTGGAGGAAAAGtAAAGTGGAGCGCCCCCCTTCGCTGAGTCTCTTTCCCACTGGGGATGGTATGGTACGTGGGGGTCCCGGGGGGGCTAGGACCGCCACGTCAGACGCCTGGCATGCTAGTGATCTGGGCCGAGCCGCCTACGCCCCTGGCTTCCAGGAGGATGGCTCAGAGTCAGACTCCGTCGCGGCCACGCCCAGCAGCACCGGCAGCAACACACCCACATCGTCTGTTCCCTCAGCAACCGCCACACCTCTCAACGAGTCTATGCTGCCCTCTGGGGAGTTTGAAGTATCCCGAGGCCGTGGGCGAAAGAACGCCAAGAGACTGAGCAGAAACATGGAGGTGCAGGTCTCCCAGGAGACCAGAAACGTCAGCATtggTATGGGGAGCAGTGATGAGTGGTCAGAATTTCAGGAGATCATTGATTCCACACCCGAGTTAGACATGTGCATGGATCCTCGTATTTATGGTGGGGGAAACAGTCCTTCTCAGGGCATCGTGAATGAAGCGTTTGGCATCAACACAGACTCCCTCTATCACGAGATCAAAGACGCAAAGTGTGGCATCATCGGTGATGTGGATTCGGGGGCGGAGCTTCTTGGGGAATTCTCAGTGCGGGATGATTTCTTTGGGATGGGCAAAGAGGTGGAGAACCTGCTCACAGAGAACAAACAGCTGCTGGAGACCAAGAACGCTCTAAACATTGTGAAGAACGACTTGATCGCCAAAGTGGACGAGTTGTCAGGAGAACAGGAGGTTCTGAGGGAAGAGCTGGAGGCCGTCaaacagtccaaaaacaaaGTGGACTCCAGAGTGAAGGAGCTGGAGGAAGAGCTGAAGAGGCTGAGAGCTGAGGCTCTGGGAGCATCTCAGGACTCCAAAGATGAAGGAGGAGAAGATTATTCGTCTACGCTGCAGGACGATGTGGCCATGACTCAGCGCCGCAGGTTCACACGAGTGGAGATGGCACGGGTGCTGATGGAGCGCAACCAGTACAAAGAGAGACTGATGGAGCTGCAGGAAGCCGTCCGCTGGACTGAGATGATTCGAGCTTCCAGGGAGAGTCCTCAAATGCAAGAGAAGAAGAAATCAACCATCTGGCAATTCTTTGCTCGTCTCTTCAGTTCTTCAGCCAGTCCTCCTCCGGTCAAGAGGCCCTACACCAGTGTCAATATTCATTACAAAGCACCTGCAGGCTTTAACCAGAGACGCTCACACACCATGTGCCAGATCTCCACCTCCAACCGCACACTCGAGTTCTTTCCTGAAGACGACACGGCGCTGTCGGCCCGCCGGGAGCAGCGTCGTGAGCAGTACCGGCAGGTCCGTGAGCACATGCGCCGGGACGACGGCCTCATGCAGGCCTGTGGCTGGAGTGTCCCGCCTCGCTTTAAACAGACGGCCTCCCAGGCGGACACCACTCAGGACGCCGCAGCAAAGAGGCCGCAGGCCAATGAGAAAGAGGACACCCGCATGAAGAATGTACCTGTGCCGGTCTACTGCCGCCCTCTAGTGGAGAAAGACCCCAACAGGAAGCTCTGGTGCGCTGCCGGAGTGGATTTGACAGGCTGGAGGACGTCCAATCAGGAGCCAGCTGTTAAGCTACCAGCCAATGGGACTGATCCTCTAacaggagaggaggagggaggagagaaTAAGAGCGAGCACAGCTCACCAGAGAAGAAGAAGcccAAGGAGCTGCATGAGACAGACTCTATGAGTAGTCGTGTGTGGATTCTGACCAGCACTCATTCAGCCAGTAAGGTGGTCATTATTGATGCCAACCAGCCCGGCTCACTGGTGGACCagtttaatgtgtgtaatgCCCATGTGCTCTGCATCTCCAGTGTTCCAGCTGCCAGTGAAAGTGATTACCCTGCAGGAGAGATATTTCTGGAGCAGCAGGGTGATGGTGGCACTTCGGAGGACACCGGCCGAGTGGAGGGTATGTTAGCGGGTATCACACTGGTGGGTTGTGCCACCAACTGCAGTGTGGTCCGCAGCAACTGCTCCTCACGCACAGACACACCAGTGCTGGACAAAGGACAAGCACCCACAGCCCCTGTGTGTAGCCGACTGGCAGTCTCTCAGTCAGCAGAAGAAGCCACTGAAGCTATGGAGGTATCAGAGGAGACGGGACCCAGTGAAGGAGGAGAAAACTCTGCTCCATCTGGACCTTTTACTGAGCACGTCTTTACTGATAATTCACACAgTGAGGGTGGTGCTCCAAAGGAACAAGTGACTTCAGCGCCACAGGACTCACAAGAGGGCGGAGACGATCGTGCCGGCACCAGCGTCGCACCTACCATGTGGCTGGGTGCACAGAATGGCTGGCTGTACGTGCATTCTGCAGTGGCAAACTGGAAAAAATGCCTTCACTCCATCAAGCTCAAAGACTCTGTACTCAGCCTAGTGCACGTTAAAGGAAGGGTTTTGGTGGCCCTGGCAGATGGAACACTTGCCATTTTCCACAGAGCTGAAGACGGTCTGTGGGACTTAACTAATTATCATCTGATGGACCTGGGTCGTCCCCACCACTCCATTCGTTGTATGGCGGTGGTCCATGACAAGGTCTggtgtggctacaagaacaagATCCACGTCATCCAGCCAAAGAGCATGCAGATTGAGAAATCGTTTGATGCCCACCCACGCAGGGAGAGCCAGGTCCGGCAGCTTGCATGGATTGGAGATGGTGTGTGGGTGTCCATTCGTTTGGACTCTACACTGCGACTGTACCACGCACTCACACACCAACACCTGCAGGACGTGGACATCGAGCCCTACGTCAGCAAAATGCTCGGTACAGGAAAGCTGGGCTTTTCATTTGTTCGTATTACAGCCCTGCTGATTGGAGGTAACAGGTTGTGGGTGGGAACCGGAAATGGAGTGGTCATCTCAATCCCTCTAACTGAGACTGTAGTCCTGCACCGCGGCCAGCTCCTCGGACTGAGGGCGAACAAAGTGTCTCCCACGTCGGCGGGGGGTGTGATCCACGTGTACGCTGACGACAGTAGCTCAGAGAAAGGAAACGGCAGCTTCATCCCGTACTGCTCCATGGCTCAGGCTCAGCTCTGCTTCCACGGACACCGGGATGCAGTCAAATTTTTTGTGTCAGTGCCAGGAAACGTATTGGCTACACTAAATGGAAGTGTGTTGGACAGTCCGTCTGAGTCTCAGGGGTCCTCAGCCCCAACAGAGACTCAGAGTGAAGCTCAGTGTGTTCAGAACGTGCTGGTGCTCAGCGGAGGGGAGGGTTACATTGACTTCCGCATAGGTGATGGTGAAGATGATGAGACAGAGGAACCGGACAGTGAAGCCCCTCAGATCAAACCTGCATTGTCTAAAGCCGAGAGGAGCCATATCATTGTTTGGCAGGTGTCCTATGTCCCGGAGTAATACGATCAGAGACACCTTATGCCTGCATTCCCCTAAACTCTGCCCCGAATTCTCTGTATGAAACCTTGTCTATTCCTAACTATGCCCCACTGCCCCCGCCCCTCAAAAATTCTGAACCTAAGCTCTGTAACTACCCCCAATTCTCCCCCACCCACTCAAAAGGCCTGTATTTACCCGAATTTCCTAAATTGTAACTATTCCCTGTATGTTCACTCATTTTCCCCTGTGACTGCCCTTCCCCCTCTTcaaaaccaacacacacacacacacacatacacacacaaacacatacgcAAGGTACAGCTCAAGACTCTTCTTGCATCTTACAGCGGAATGGCAGTTATTATAACCAACCTAGATAAGAGCATCCTGTCCAATTATTACCTTCTCCCAAAAATGACCCAGTATTTTTGacaaatacttaaaaacacCTTACAGCTTTTATTCTTAACTTTCCAACAGCTCACAGCTCACTAATCACCAAGACAACAGGCAGCTGATTGGATAAGGACTAAAGACCAGGGGTCTGTGATTGGTTGGAGGGAGACAAGACAGGTTTGTCTGAATTTAGTAGCTTGTTTATAAGAATACATAAGAAGAAgaactgaagaagaaaaaatgaagagtaaAGGAAAGGTGAGAAACGTGTACAAAGATGTAAATATTGAAGTTACATACAGTAAGTAAGTATGCCTTAGGAGTGTGACTGTGAGGGAGGACAGATGACCGATGAGACAATGGACAGCTAATGACCTAAAATGATAACATAATGTTTTTTGAATAAGAAAGCACATAGTTGGGAACCCCATTCAAATGCTTTTAAGGCTTTTAAGGTTTTTGTCAGCGAAGCAGTAAGATCAAAGTAAAGGATATAtcgtttaaaaagcataaatcATACAAAAAGTCATATATAACTATGTAATAACCGTGAGCTGTGAGCTGCCTGGGTCGCAGGCTCATCGAGGGCTATGATTGGCTGCCCATCTGACTGACAGTTGATGAACACCCCTCCAAATCGCTATGTATGTAACTCACCACTATCTGTTCTCTTATGTgtggttaaatattaaatattaaaaataaacgtGCTCTGGAAAGATGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10628 lncRNA upstream 37271 3953730 ~ 3954709 (+) True G7795
TU10629 lncRNA upstream 37271 3953842 ~ 3954709 (+) False G7795
TU10627 lncRNA upstream 37356 3954132 ~ 3954624 (+) False G7795
TU10619 lncRNA upstream 47921 3941831 ~ 3944059 (+) True G7789
TU10609 lncRNA upstream 62738 3924388 ~ 3929242 (+) True natd1
TU10615 lncRNA downstream 371 4056858 ~ 4063296 (+) True G7785
TU10653 lncRNA downstream 10667 4067154 ~ 4069092 (+) True G7812
TU10650 lncRNA downstream 15343 4071830 ~ 4095000 (+) False G7810
TU10655 lncRNA downstream 16407 4072894 ~ 4094331 (+) True G7813
TU10649 lncRNA downstream 34014 4090501 ~ 4095000 (+) True G7810
XM_007256302.3 mRNA upstream 2026 3981473 ~ 3989954 (+) True jpt2
XM_007256305.3 mRNA upstream 54760 3933164 ~ 3937220 (+) True tmem11
XM_007256306.3 mRNA upstream 62958 3924380 ~ 3929022 (+) False natd1
XM_007256307.3 mRNA upstream 73302 3913539 ~ 3918678 (+) True phospho1
XM_007256309.3 mRNA upstream 87231 3894477 ~ 3904749 (+) False znf652
XM_007256297.3 mRNA downstream 187689 4244176 ~ 4250400 (+) True rpl19
XM_015607606.2 mRNA downstream 189015 4245502 ~ 4250400 (+) False rpl19
XM_022672372.1 mRNA downstream 207312 4263799 ~ 4285939 (+) True LOC103033979
XM_022672412.1 mRNA downstream 366267 4422754 ~ 4445870 (+) False LOC103026143
XM_007256293.3 mRNA downstream 374789 4431276 ~ 4445870 (+) True LOC103026143
TU10606 other upstream 62977 3924285 ~ 3929003 (+) False natd1
TU10605 other upstream 62977 3924388 ~ 3929003 (+) False natd1
TU10347 other upstream 539314 3449221 ~ 3452666 (+) True G7593
TU9947 other upstream 1458217 2530616 ~ 2533763 (+) False G7296
TU9779 other upstream 1933157 2050319 ~ 2058823 (+) False carm1
trnac-gca_1 other downstream 90149 4146636 ~ 4146707 (+) True trnac-gca_1
trnac-gca_2 other downstream 92100 4148587 ~ 4148658 (+) True trnac-gca_2
trnac-gca_3 other downstream 94554 4151041 ~ 4151112 (+) True trnac-gca_3
trnac-gca_4 other downstream 94844 4151331 ~ 4151402 (+) True trnac-gca_4
TU11173 other downstream 1275578 5332065 ~ 5339048 (+) False hcrt