RNA id: XM_022673172.1


Basic Information

Item Value
RNA id XM_022673172.1
length 6477
RNA type mRNA
GC content 0.57
exon number 31
gene id helz
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 8604205 ~ 8684262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

aacacccccCGGGCGCAGAACTATTTGACCATCATGCCGTGCGATAGGCTGACAAGTGGATCCAAGATGGCGTAGAAAGTAAAGCTAGACACTCTGTCCCAGAGTCATGGAGGACAGGAGACCACAGAAGTCATGTGAAGAAGCCATTGGATCATTAGTGAGGCGGGAGTATGAGACGGCGGTGGCCCACAGCACGGAGGCCCTGCTGGCCTTGGGGCCGTGTCCCCCCACCCCCAACACGGCCCTCCTCCGCAAGCGTGCTCTGCTCTACCGGATTGCAGGCCTGCTCCAGCTGAAGGAGTATGATCAAGCTGATGAAGACTGTAAGCATGtgcTTGCTGAAGAGTTGGGGAAGGCAGAGGGAAGTTTTCGAGCTGGACTTCAGAACATGTTGCTGGATGGAAGTCTACAGGAGGTCTTTAGCATTCTCTCCAAAGCTCTGTATGGAGAACCGTtgAATGGAATGATGGCTAAGGATATGACGAGACTGAAAATACTTCTATCTGAAATTGAGGCCATAAACAGTAAGATGACGACGCAGCTGCCGGAGGAGAGCGAGGAGGATGTTCTGGAGGGGTGGCAGTTCCGTCCTCCACCTCGAGGAGTCACTAGCAGTGAGGAGTACACTCTGTGCAAAAGGTTTCTGGAGCAGGGCCTGTGTCGATACGGGGCTCAGTGCACATCAGCCCATTCTCAGGAGGAGCTGACGGAGTGGCAGCGGCGCTATGCCTCCAGACTCATCCGgctgaagcagcagcaggaaggGAAGCACTACACTGAGAACTACATGGAGGCGCTCATAGAAAAGTGGATCAACTCCCTCTCTCCAGAGAAAGTGCTCAATGACTGTGTGGATGGAGTTACAGTGGAACATAGCTCAGATCTGTCAGTCACTGTCAACACCAAAAAGTCTTCTCATTCCTGGACATTCTCACTTTACTGCAAGCCTGCCCGAACCCTGCACCGGATCGCCCTGCTCTACGACGCCAACCGGCCACACTTCTCCATCATGGCCGTGTCAGCGGGGGACACGTCCAGCCAGGTGCAGCAGGAGGGGTGTGAGAGCGGTTGTCAGGAGTGGAGCGGAGCGGGTCTCGTGCAGAACGGCATGGATCACTGCCTCTACACCGTGGAAGTGGCCTTCAACACAGAGATCTTCGGGACCTTCCGGCAGACGGTGGTCTTTGACTTTGGTTCAGAACCTGTGTTGATGCAGAGAGTGATGGTGGACGCGGCATCTATTGAAGACCTGGAGCATTTAATGCAGGCCCGCCAGCAACTCCTGATGACAGCAAAGCGCTGGGACTCGTCCTGTAAGACCATCGTGGAGTTTGTTCCTGGTGAGAACATGGAGCTGGAGCGAAGTCTGCTGAGCCGCTATCAGATCCCACTGTCTGCTGACCAGCTGTTCACTCAGTCTGTGCTGGACAAGTCCCTCACCCGTGATAACTACCAGGCCCGCCTCCACGACCTGCTCTACATCGAGGAGATCGCTCAGTACAAGGAAGTCAGCAAGTTTAACATCAAGGTGAATCTACAGCTTGTGTCCAGTTTCATGCTGACTGGCATCTCTGGGGGCGCCAAGTATGCTCAAAATGGGCAACTATTTGCCCGTTTCAAACTGACGGAGACGTTGTCAGAGGACACGCTGGCGGGAAGGTTGGTCATGACCAAGGTGAATTCTGTGCTCCTGCTGCCAGCGAGCCGGGAACGGGTGGGCCAAGGCCATCCCACCAGCAGCAAGGAGCGTGTCTACGAGGCTCTGATCGAGGAGAAGACTAAGGACTACATCTTCCTGCGAATCTGCAAAGAATGCTGTGATGAGCTCGGTCTGGCCCCTGACAGGGAGCTACAGGTGGAGCTACAGTTCCAGCTTAACAGGCTGCCGCTGTGTGAAATGCACTATGCTTTGGATCGCCTCCGAGACAACAGTATCCTCTTTCCCGACACCGGCCTCACCCCCACAATCCCCTGGAGCCCCAACAGGCAATGGGACGAGCAGCTGGACCCTCGTCTGAACGCCAAGCAGAAGGAAGCCATATTGGCCATCACCACACCCCTCTCCATCAACCTCCCCCCTGTGCTGATCATTGGACCCTACGGCACTGGCAAGACCTTCACATTAGCCCAGGCTGTCAAGCACATCCTCAAGCAGCCCGACTCGCGGGTCCTCATCTGCACCCATTCAAACAGCGCCGCTGATCTGTACATAAAAGACTACCTTCATCCATACGTGGAGGCAGGCAATCCACACGCGAGACCTCTCAGgGTTTACTTTAGGAACCGCTGGGTAAAGACTGTGCACCCCGTGGTGCAGCAGTATTGCCTGATCTCTGGAGCTTACTTCACCTTCCAGATGCCCACTCGGCAGGACATAGAGCGCCACCGTGTGGTGGTAGTAACCCTCAGCACCTCCCAGTACCTCTGTCAGCTTGATCTGGAACCTGGGCTCTTCACGCACATCCTGTTGGACGAGGCTGCCCAGGCCATGGAGTGTGAGACCATCATGCCGCTGGCGCTGGCCAGTAAGAGCACACGCATTGTCCTGGCTGGAGATCACATGCAGCTGAGTCCGTTTGTGTACAGCGAGTTTGCGCGGGAGAGGAACCTGCATGTGTCTCTGCTGGACCGGCTGTATGAGCACTATCCCTCGGAGTACCCCTGTAGGATCCTGCTGTGTGAAAACTACCGCTCCCATGAGGCAATCATCAACTATACGTCGGAGCTGTTTTACGAGGGAAAGCTGATGGCCAGCGGCAAGCAGCCGCCTCACAAGGACTTCTACCCTCTGACCTTCTTCACGGCCCGTGGGGAGGATGTGCAGGAGAAGAACAGCACGGCCTACTACAACAATGCCGAGgtgtttgaGATTGTGGAGCGTGTGGAGGAAATGAGGAAGAAGTGGCCAGTGGCCTGGGGCAAACTGGACGAGGGCAGTATCGGCGTGGTGTCTCCCTACGCGGACCAGGTCTTCCGCATCCGTGCTGAACTCCGCAAGAAGCGCATGCACGAGGTCAgcgtggagagagtgctcaacGTTCAGGGTAAGCAGTTCCGAGTGCTGTTCCTGAGCACGGTTCGCACTCGTCACACCTGCAAGCACAAGCAGACCGCCATCAAGAGGAAGGAGCAGCTGGTGGAGGACTCCACGGAGGACCTGGACTACGGCTTCCTGTCCAACTACAAGCTCCTCAACACTGCCATCACACGCGCCCAGTCCCTGGTGGCCGTCGTGGGAGACCCCATCGCTCTGTGCTCAGTGGGCCGCTGCAGAAAGTTCTGGGAAACCTTCATCTCCATCTGTCACGAGAACGGCAGTCTGCACGGCATCACGTTCGAGCAGATCAAGGCCCAGCTGGAGGCTCTGGAACTGAAGAAGACCTACGTGCTGAACCCCCTGGCCCCGGAGTTCATCCCCCGTGCCCTGAGACCCCAGCACCCCCAGGGCCCTGGCAAGCACCAGCACTCCCCACCAAAGgCGAAAGGACAGCTTGCCAATCACGCTGAGCACTTTCCTCCTGAAGGCTTCGTTCAGCCGAGCGGCGCCGTATTGGTGGGGAATCCCATCCAGGCTTTCACCCCGCCTGGAGGAGCAGCTCCGGCCGCCGGCAAGTCCCCCAGCCCTGTGCAGCGCATCGACCCCCACACCGGAGCCAGCATCCTGTATGTGCCCGCTGTTTACGGAGGCAACATGGTCATGCCCATGCCACTGCCGCTGCCGTGGGCGGGCTACCAGAACCGCTTCGCCATGGACCCTCGAATCATGAGCCACCCAGCAGCTATGGCGGCCTACAATCTGAACCTGCGGCCAGCAGCCAGCCGGGCGTCTCCCGTTCTGTACGGCCTGAGTCAGCCCTCTCCTCTCGGCCTCGCCCAACCGCTCCCTTCTGACAAAGAGCTTCTGCAGGAGCCCAGCGGCAACGGGAAGGTTGACGTTAATGGAAAAGTGGAGCATGGCAGGCTGCTGACACCTGAAAGGAAAGCCCCCGagctgaaagagaaacagGGAGAGGCAGAGTCGGTTCAGAACAAAAGCCCCGAATCCCACCCTGGAATGGGCTTTCCTGCCAGCCGCCTCCTGCGCAAAGAACTGCCGGCCCAGCGCTCTCTCAACTTCCACCTGGCCCCACCCCACCCGGGCTTCGCCCCCCACCCTGCCGGCGGCCCCTTCCCCCAGCAGTACGGCCTCCCCAGACCCCCTCTCCGCATGCAGGCTCAGCACCCAGGGCCCATGCATCCTCAGCCTGCCGCCTTTCCTCCTTCTTTCTTCAGCGGCCACCCAATGGGTCAGCGCAGCCTGCAGTCTCCTGGGCTGGAGGGGATGGACGGAGGGGAGGGCCTGGTCGGGGGTGTACCTGAGGAGCTGAAGAGTGTAGTTAGAGGTCTGCCCCCTCAGCCCCAGCCACATCAGCCGCCACCACCCCAGCCACATCAGCAGCCCATGCGCCTCAACAGCTTTGGGGAGGAGAGCCTGGACTCACTGCTGGGAGATACTTTAGatggccAGAGCTGTACAGGCATAGATGCTTTGGTTcctcaacaacaacagcagcagcaggcggCACGTCTGAGCCAGTGGAACGAGCCTGGACCCTTCCTGCAGGGTGCTGGACCACCGTTCCCACTTGCCCAACAGCTAGCTCATCTCGGCCAGCCAGGCCTGCGGCTCCCACAGCAGCTGCTCCGGGCCAACTGGGGTCTGGGCCCCACCGCTGAGGATGAGCCTCGGCCACCCATGCCCAGGTATCCTGGTCTGCTGCGAGAGATGCTCCCACAGGAGCCCTTCGAGCACCGCGAAGCTGCAGACATGCCACCCCCGCAGTCCCGTCTACTGCAGTACAGGCAGGTGCAGCAGCCCCGCAGTCCTGGAGAACTGCCCTCTCCCTCCTCCGCCCCCTCAAACCCCCACGCCCACAACCACGTCCCCAACCCGGGCGCCTTCCCTTACCCAGAAACCAGCCGCGACCTCCCCTCCACCATGCAGCCCTTCCATCAGCATCAGGCTTTTAGCCAGGCCGCCTTCTCCCTGCCCCCTGAGCACGCAGCCGGCCCCCTGCCCGTCAAGTACCTCCTCTCTGAAGCCCACTGGCCCCACGCCGGCCTGCAGCAGAGCCAGGTGCTGGGCCCACCTCTGCCCTTCGGCCTGCAGTCCATGGGGCCCCGGCAGGAGCAGGGGCCTCTTGGGCCActgcagcaccagcagcagaaacagcagcagcagccgcagcATCATCAGCTCCAGGCCCAGCAGAGTACCCTGCACAATGTAGAAGAGTATGAACCACGAGGGCCCGGTCGGCCACTGTACCAGAGAAGAATCTCTTCCAGCTCTCCTCAACCGTACCCAGAGAGCGTGGTCCAGTGTAAGGACCCTCAGGACCACCCCACGCCCTCCTACAGATACCCCCCAGCAGACCTGTGGCCCGGCACCAGCGGCCCTGGCCCCAATCCGGGCCCTGCTCCTCTCCACAACATTCCGTGCAATGGAGCGAGCCACCTCGTCCCTCACAGGGACATATCAGTTTCAAAGGCGATGAACGCTGCGGAAGAGCACAGCCAGGCCGAATGTCTGCAGCCGCCGCCCCACCCCACTAGTCTCACGTCTCTCCAGCACCACGGACAGTTCCCACCCCTCATGCCCAGCAAGCAGACGCCCCCAGACCCCGGAGGAGGGGGCAACACCAGCCCAGGAGGCTCCCAGGCTCCTGCCCACTCCAAGCCCCCCACCATGTCCTAcgccagcgccctccgagccccCCCGAAACCCCGGCCACTGCCCGAGCAGGTCAAAAAGAACAGCGACCCCATCTCTCTGTTAAAAGACCTTAGCATAGGGAGTTCAAATAGTAGCAATGGGTATTACTCGTATTTTAAATaagtgaatatatataaaatatatacacctGTTAAAGTGAAAacgatgacaaaaaaaatagaataacaatcttaaaaaaatttcaaccaataaaaaaaaagtcttttgaTTTTGTCGGATAGTTAGACCTTTgcgttttattattttttacttactttagtTAGTcggttattttacagtttgacaTCTGTGGTTTTACAAACGAAAATCAGCATATATATCAAGAAATACcaaaatgttaaagaaaaacacacaaaaaatttatgaaaacaaaaaagatttttaaaaacacaaggaATTGGTTGACCACTTAGCTGCCCGTCGTTCTTTTCCTCTAATTATGTCTGCTCTATTTGCATCATCTACTATCCGAAGTAAACTCGTTGAAGTGATTATTTTCCCCCGAGCTGgcttttttgcttttctcttttttcctttttttaaaatgttgaattCCTTAATCATTATCGGTGTGTTCTCTTGTGCCAGCAGCTGAGTGGTGAACCGACTCggacaaaaaatattataaaaagttGTATAGCTGTAGACAAACTTTTCTCAaactgtacataaaaataaaggaataaaagagATGAACGCTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K25168 HELZ; helicase with zinc finger domain

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU12330 lncRNA upstream 8342 8594824 ~ 8595863 (+) True G9073
TU12310 lncRNA upstream 11335 8503214 ~ 8592870 (+) True G9056
TU12314 lncRNA upstream 49484 8554254 ~ 8554721 (+) True G9059
TU12300 lncRNA upstream 118269 8478322 ~ 8485936 (+) False LOC103021541
TU12241 lncRNA upstream 163057 8438846 ~ 8441148 (+) False LOC103040872
TU12351 lncRNA downstream 21170 8705432 ~ 8762647 (+) True G9088
TU12360 lncRNA downstream 89242 8773504 ~ 8774905 (+) True G9096
TU12372 lncRNA downstream 114598 8798860 ~ 8801890 (+) True G9108
TU12383 lncRNA downstream 121265 8805527 ~ 8805727 (+) True G9111
TU12384 lncRNA downstream 122635 8806897 ~ 8807677 (+) True G9112
XM_022673163.1 mRNA upstream 122748 8464116 ~ 8481457 (+) True LOC103021541
XM_007232221.3 mRNA upstream 162376 8438786 ~ 8441829 (+) True LOC103040872
XM_007229946.3 mRNA upstream 501664 8077924 ~ 8102541 (+) True LOC103045652
XM_022673050.1 mRNA upstream 584171 7984548 ~ 8020034 (+) False gpatch8
XM_022673244.1 mRNA downstream 156827 8841089 ~ 8885543 (+) False lmtk2
XM_022673237.1 mRNA downstream 156828 8841090 ~ 8885543 (+) True lmtk2
XM_022673268.1 mRNA downstream 235567 8919829 ~ 8928199 (+) False bri3
XM_022673312.1 mRNA downstream 815571 9499833 ~ 9611812 (+) True LOC103034760
XM_022673318.1 mRNA downstream 947593 9631855 ~ 9720856 (+) True rai1
trnag-acc other upstream 2867 8601267 ~ 8601338 (+) True trnag-acc
TU12331 other upstream 7422 8595869 ~ 8596783 (+) True G9074
XR_002650961.1 other upstream 2324515 6278969 ~ 6279690 (+) True LOC111194160
TU11320 other upstream 2874705 5728922 ~ 5729500 (+) True G8287
TU11173 other upstream 3265157 5332065 ~ 5339048 (+) False hcrt
TU12385 other downstream 125439 8809701 ~ 8810467 (+) True G9113
TU12401 other downstream 235581 8919843 ~ 8930980 (+) False bri3
TU12402 other downstream 235581 8919843 ~ 8930980 (+) True bri3
TU12403 other downstream 235581 8919843 ~ 8931005 (+) False bri3
TU12405 other downstream 235581 8919843 ~ 8930980 (+) False bri3

Expression Profile