RNA id: XM_022674345.1


Basic Information

Item Value
RNA id XM_022674345.1
length 1965
RNA type mRNA
GC content 0.45
exon number 8
gene id tubd1
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18439140 ~ 18445800 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTTACGTCACTTCCGGAGGAGGGAAATCTGAAACTAGCTGAGAGCTGACAGGGAAGGCAGCAGATTCAGAACCGGAGTTTaccgttttattttttgtatttatcttGTTAACTGCCCGTAGTTTTGCACCAGAACCACTATCAGACATTCCGCTGTGAGAAATGTAGGTTTAACCGGGCGCCAACGTGGAGGAAgtagctaacatagctagcttagctatcgttaattattattaataatacagcagAACCTGCAGAGACTCGACCACAGCTAACGCTAACTGCTGCTGCTAGGCTACCGGTAGCACGCTTAGCTACAGACTGAACGACCTGCTGAAGCggttactgctcaaatcaacctAAATACACGTGTTTACTGCCAGACCAGCTCAGCTCTGGTATTATAAGACTCTCTGTGAGATGTTCTCTGAGTGTGTGGGATTACAGCAGTGTGTAGATGAAGGTAAagctctgtatctgtgtgtgaatGTTAGTTACAGGTTAGCTGAGCTATGTCTGTAGTAACAgtacagttgggtcagtgtgGAAATCAGATCGGGCCAGAACTCTTTAGCACTGTTTATGAGGACTCTACTGGAGCTGGTAGAAAAACTTACCAGGAAAGCAGCCGTGAGAGGTTTTTCTGGGAGACTTCAGATGGAGTGCTGGTGGCTCGGTCTGTCCTGGTTGACATGGAACCCAAGGTGATTTCACAAGCCGTAGCAAAGGCATCAAAATCTGGAAAGTGGAGATACGGGGAGAAAGCACACTTCTGCCAAAAGCAGGGTTCTGGAAACAACTGGGCAAATGGATATTGTGTGCATGGGCCACGCCATAAAGAATCTGTGGAGGATCTGGTCCGGAGAGAGGTGGAGCGCTGTGATCGTCTAGCAGGGATCTTTGCTATGATGAGCGTTGCAGGGGGTACAGGGTCCGGAGTAGGGACCTTTGTCACACAGTGTTTGCGAGACATGTATCCTCAGGCCTTTATTCTTAATCACCTGACATGGCCGTATGGAACAGGAGAGgtgaTTGTGCAGAACTATAATTCAGTTCTTACGCTGTCGCGGCTCTACCAGCTGTCTGACGCCCTTGTGGTTCATGAGAATGACACTGTTCATAAAATCTGCAGCCGGCTGATGAATATCAAGCACATCTCCATTGGGGATATTAATAAGGTGATTGCTCACCAGCTTGGTAGTGTGCTGCAGCCCGCTTATACTGGAGATTCGCCTTCAAATTACAGCAGAAACCCAATAGGTGAATTACTGAGTTCCCTGGTTTGTCACCCTGAATATAAGCTGCTAAGCCTTTGCAACATTCCTCAAATGTCTCATACCTCACTGGCCTACAGTGCGTACACGTGGCCTGGACTTCTTAAGCATTTAAGACAAATGCTTATTGCCAATGCCAGGATGGAGGAAGGTATTGATTGGAAAGTGTGTGTGCCGTCATCTCGAGGCGACAGTGTTAGAACTGGACAAATGGGTTTTAACAGATCACTTGCCAACCTTATGATACTGAGGGGGAAAGATGTTTCCAGTGCTGATGCAGGTGCTTTTAAAGACCCTGCCCTGTATGTGCCTTGGCTTCCACCAGATGGCACTTTCAGCTTGTGGAACTCGCCGGTGCCATTTAACGGTTATGAGAAATCTGCCTCTTTAGTCAGCAACAGCCAGTCCTTGTTGAAACCTCTGGATAACATGGTTAGGAAGGCTTGGAACATGTTTGTATCTAGGGCATACATGCATCAATATACAAAATTTGGAATTTCAGAAGATGATTTTCTTGACAGTTTTACAACGTTGGAACAGATCATCTCCAGCTATTCTCATCTTTGAATTGTTGTCATGTCAAAAAATGAACTTATGCATCCCACTCTTACGGCTTTTAAATGTCAAACATAAACGTGTTGAACCAgaaaatgcaatatatataattaaattaatatatacttTCTCAAAA

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K10390 TUBD; tubulin delta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15480 lncRNA downstream 3546 18435237 ~ 18435594 (-) True G11491
TU15473 lncRNA downstream 4574 18414342 ~ 18434566 (-) True G11484
TU15466 lncRNA downstream 26247 18394234 ~ 18412893 (-) True G11482
TU15470 lncRNA downstream 28570 18394234 ~ 18410570 (-) False G11482
TU15465 lncRNA downstream 34547 18387055 ~ 18404593 (-) True G11481
TU15489 lncRNA upstream 1537 18447322 ~ 18459900 (-) True G11494
TU15497 lncRNA upstream 47225 18493010 ~ 18517558 (-) True G11498
TU15532 lncRNA upstream 165290 18611075 ~ 18611735 (-) True G11526
TU15538 lncRNA upstream 202094 18647879 ~ 18681060 (-) True G11532
TU15612 lncRNA upstream 260855 18706640 ~ 18709344 (-) False LOC107197925
XM_022677873.1 mRNA downstream 116526 18297556 ~ 18322614 (-) True itgae
XM_022674298.1 mRNA downstream 143078 18279158 ~ 18296062 (-) True cul5
XM_007231022.2 mRNA downstream 164892 18266393 ~ 18274248 (-) True mrpl28
XM_015608588.2 mRNA downstream 164909 18266393 ~ 18274231 (-) False mrpl28
XM_007231019.3 mRNA downstream 200574 18237312 ~ 18238566 (-) True mos
XM_022674383.1 mRNA upstream 168412 18614197 ~ 18632647 (-) True LOC103040343
XM_022674419.1 mRNA upstream 289616 18735401 ~ 18762753 (-) True pou2af1
XM_007260522.3 mRNA upstream 387639 18833424 ~ 18838223 (-) True LOC103039462
XM_022674455.1 mRNA upstream 442234 18888019 ~ 19056737 (-) False LOC103023129
XM_022674452.1 mRNA upstream 442234 18888019 ~ 19056737 (-) True LOC103023129
XR_454920.3 other downstream 2085306 16323033 ~ 16353834 (-) False LOC103036671
XR_002650886.1 other downstream 2536707 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other downstream 2536707 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other downstream 2536708 15762347 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 3152405 15285845 ~ 15286735 (-) False LOC111188178
TU15837 other upstream 662928 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 793121 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 1340196 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 1552655 19998440 ~ 20082442 (-) True G11917
trnak-cuu other upstream 2529297 20975082 ~ 20975154 (-) True trnak-cuu

Expression Profile