RNA id: XM_022674647.1


Basic Information

Item Value
RNA id XM_022674647.1
length 2588
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC103024090
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19359785 ~ 19370144 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGACTCTTTGCCCAGGTCAGACAGGATAGGATCATCGTTCAGGGATTAAAAGAAAGCACTGTGGGAATTTCTCAGAGGCCTTAAGCTTTTCTTCTGTACTGATATTGATGTAGGGACAGTAGCTAGTAGCTGAGATGTTTGTCTTCAGCCTTCTTCTACTTGGAGTGCTCCTTCCAGGCTTCCAGGCCCTCACTCTGGAAGAATGTGGCAGCAATGCCAGACGTCCAGCGTACACAGACATTTCCGTGGCCTGTGGGACCCAGTTTATTGAGTTGTCCATCTTGGTATGTCCTGTCATTTATACTGGATACAATGAGAGCCTGCTGATTCTCAACCAAATGGGGAATAATCCCAACTGTCAGGGGCGGCTGAACACCTCGGTCACTCCTCCGGTCGTCCGCTTCACTTTCCCACTCAGAGAGGCTGATTCCTGTGGCAGCAACTTTGTGaccaCCAGCGCTCCAGGCACAGGCATCTTCTCAGACTTCTCTAACATCCAGACGGTGAACGTGAGTGGGGTGGTCCGCTCCTTCGACCCCACAGTGGGAACCGTGACTTACAATGCTGAGCTGTCCTACTTCTACTCATGTGCTTATCCGCTGGAGTACCTCATCAACAACACAGTCGTTGATGTGTCGTCCTCCTCCATTGCAGTAAAGGACAAAAACGGTACGTTCATCAGCACTCTGAGCATGCAGCTCTTCAAGgatAGGAACTACACTTCTCCGCTGATAATCCCTCCTCTGGGAATTGAAATGAGAACTACTATATATGTTCAGGTCATCGCTGCGAACCTGACAGCACAATATAATGTTATGCTGGACCAGTGCTATGCCTCCGTCTCTCCTCTGCCCTCCAACTCCACCGTTTTCAATCTTTTTGTCTCGTGCTCAAAGGACCGCTTTACTACCATGTATGAAAACGGAGACACGCAAAGAGCTCGCTTCAGCTTCCCGGCCTTCAGATTCACCGAGCAGCAGAACCAGACCGTCTCCACCTACTACCTGCACTGCATCACCAGGCTGTGTGAACGCACCAACTGCAACCAGTTTAAGgtGGGGCAgtgcaggaggaagagaagagaggctGAGACGACTATAATTAAGGACAGTATCTCTGCGCTCATCACTTCAGTGCCCATTGTGACTCAGGAGGACAATTccatGGCCTCCAATACAGtgACCACCCAGGCCAAGGCTGCAAATAAAGGTTCCTCAGTGGGTCTGAGCGTTGCTGTGGCTGTTCTGGTTGTGGTGGGCACCGTCGCTGCCCTGATGGCTGTGACCTTTTACCGCAAACTCAGGTGGTTCCACTGATCGCCATCTGTCGTCTGACGTCCGTGATGGGGGACTTGCTTGAGTGCAGGTTGAGGAGGGAACCTGGGCTTTCACCCTGCTGTCTGTGCATAGTTTTGCATTAACTTTTCCTATAGAAGGTTATGTGGTCTGTCATAAGACTATATAATACTCATAAAAAAGGTATGGGCAGTTTATAATATCAACATGTGCTGTAAACTttgcgaaaaaaaaaagttttttttattctctcacATGTAAACTGTCATTTTTTCACTgtgttgttgaaaaaaaaaatgctggtagGGTTTTgcaaatattactgttaatttcTTACAGTTTGCTGCCACGATAATGGGAACACTTGAGTAAGTGGGGAATATAAATGATGTAAAAGCAGGAGCTTCAAAACAGATGTGGCTCATGAATTAGCTGAGTTTTCAACTCAGGATGCAAAGCCAGAGGTGGTTTAAAATAGCCTCTTTTTATGGTTGTACTCAGTGATTCATCCGCACTTTTATCAAATTTGTATCCTTCATTCACTCCAATGTtgcttttatgtgtttttggcTGTTGATTGGTCTCTGCGGATCCAGCTTTTAAACAATTCTCCACAACAGAGAGCCTGAAGGCCTTGAATATTGTAATTCAATAAACTGTATTCAGTGAAAGAAGCAGACACAACTGCTTTAGTAGCTTTAGGAGCTTCAGTAGCTGTAGTGGCTTTAGTGCGGTAGTCAAGAGAAATTAATAATGTTGATGGACATGTATTGGTAGAGCATCTTGCTGAATGCATGATTATTCCTTACAAAATGGTCTGAACTTCTGTTTTGCTCTCATCTAAAAGCCTTTTGATTGAGACGAGCTCCCGTGCATTTTGTCCCGGTTCTGTTGAAACAGCAACTCGCAGGATAGAAGGAACGCATTAACGAAGAAGGTCTAATGCGTCTGTTGCAGATTGCACGGCTAGACGGCTGTTAATGTAGACTATTGATTTTGAGAACATCACTGTGTTTATATCAGCTCTTATAGTGTATATGCAtgtgttattatcattattattgggCTATTAAAGCTTACAGGGCTGTAAAGATTGGCTGCATGACTTCATTCATTCTGTTAGCCATTAAGACTCCATTACATTGACTACATATAGTGTGTTTACAATCACAGTATCGGCACTCCTACTCTTATATTTAACTCTTTAGCGTACAGTGACTTTACAGTGAGTACACAGACCTGTAATGGTATGTAAATGTTGTTAATAAATtgttaataaactgtttaaaac

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15847 lncRNA downstream 85931 19241756 ~ 19273854 (-) False LOC103042450
TU15868 lncRNA downstream 93051 19266438 ~ 19266734 (-) True G11742
TU15840 lncRNA downstream 238626 19117942 ~ 19121159 (-) True G11720
TU15830 lncRNA downstream 265741 19091508 ~ 19094044 (-) True G11712
TU15645 lncRNA downstream 427624 18879117 ~ 18932161 (-) True G11608
TU15883 lncRNA upstream 5087 19375231 ~ 19377538 (-) True G11747
TU15890 lncRNA upstream 21159 19391303 ~ 19535599 (-) True G11753
TU15901 lncRNA upstream 83249 19453393 ~ 19475044 (-) True G11763
TU15932 lncRNA upstream 161245 19531389 ~ 19532500 (-) True G11784
TU15934 lncRNA upstream 172177 19542321 ~ 19542560 (-) True G11786
XM_022674642.1 mRNA downstream 47157 19284979 ~ 19312628 (-) False LOC103042959
XM_022674633.1 mRNA downstream 47157 19284979 ~ 19312628 (-) False LOC103042959
XM_007260532.3 mRNA downstream 47157 19284979 ~ 19312628 (-) False LOC103042959
XM_007260531.3 mRNA downstream 47157 19284979 ~ 19312628 (-) True LOC103042959
XM_007260530.3 mRNA downstream 86377 19244451 ~ 19273408 (-) True LOC103042450
XM_022677697.1 mRNA upstream 12920 19383064 ~ 19397085 (-) True LOC111194225
XM_022674716.1 mRNA upstream 121691 19491835 ~ 19505349 (-) True LOC103024404
XM_022674717.1 mRNA upstream 121691 19491835 ~ 19500994 (-) False LOC103024404
XM_022674729.1 mRNA upstream 166266 19536410 ~ 19541417 (-) False LOC103047043
XM_007260549.3 mRNA upstream 166266 19536410 ~ 19540706 (-) True LOC103047043
trnap-cgg other downstream 120808 19238906 ~ 19238977 (-) True trnap-cgg
TU15837 other downstream 248213 19108713 ~ 19111572 (-) True G11719
XR_454920.3 other downstream 3005951 16323033 ~ 16353834 (-) False LOC103036671
XR_002650881.1 other downstream 3457352 15762347 ~ 15902433 (-) False LOC103030038
TU16077 other upstream 415837 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 628296 19998440 ~ 20082442 (-) True G11917
trnak-cuu other upstream 1604938 20975082 ~ 20975154 (-) True trnak-cuu
TU17143 other upstream 2623663 21993807 ~ 21994751 (-) True G12767
XR_002650646.1 other upstream 4169113 23539257 ~ 23553970 (-) False LOC111193708

Expression Profile