RNA id: XM_022674699.1


Basic Information

Item Value
RNA id XM_022674699.1
length 6032
RNA type mRNA
GC content 0.46
exon number 19
gene id LOC103046737
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19449562 ~ 19489254 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACAAACACCCAGcagcacagagaacacagacagcagagagagaggctgTGTGATCAGAGCTCTCAGGAACAGAGGGGGTTAAGCAGCACAGCTTTAGCTACACATGTCTGACTAGAGTTATACAGACAGAGCAGAGCATGGGCTGCTCCTGAATCACTGCTCCTGCGGTCCTGAACCAGCCAGACTGTGTCTCAGAGCTGTAGTGTCTGAGGAACAGGTACTGAACCCCTGCTGGTTCTGAGCAGTACAGTGGGATGAGGGTTACAGGCTGCCAGCTGTAAACAGGCTTCACTGAAGACCTTTTGCCCAGAACCTACACTTAACTGGAAATAAAGAAGCACACAAGAAGCTTCGTTCAGTAATAACGTGAGGAAGAACTAAATAAACCACGATGATTGACCTGAGCTACCTAACCGAGGAGGAGCAGGGGATGATTATGACGGTGTTAAAGAGGGACGCAGAGCTGAAGAAGTCAGAAGAGGAACGAATCAAACACTTGAATAAAGCAGCTCCTGAGGAGGGTAGAATGAAGTACGTGACGGGAGAGTGGTTCTATGAGGCAAAGTCTCAGAGGCACCAGGACAGAATTCATGGCTCTGATATCATCATAGCATCTATGAAACAGAAAAAGCCCATGACTGTTGAATTTTTAACTCAGTCGTGGAGAGAACGCTCCAGTAAAAGTAACAACGATGCTTCAACACCAAAACCAGGAACAGCAAACAATCTCCAGAGTGAGACATCAGAAGCTCAGCAGGACAGACTGAATTTGGCTATGAGGTCACCATCCAGAcCGAGGCACAACCCATTTAACAGCGTTCCAATAAACCTCGACCTTGAAGACATCAACAGCCAGTTGATAACCAATGAAGCACCAGGACCTAAAAATCAGAAAGCATCAATTAATGCAGAAATGATGCTACCGCCAAAAATGGAAGCAAAAAACGAAATCTCCGACACTGTACGAGAAATAGCTCCTCGCCAAAAACCTGTGCCAAGAAAGAGAACCAAACTTTACCAAACGTATAAATTCCAGAACTCGGTTTCAGACAGCGCCAGCTCCCAGACCTCCCAGACTGTGTCTACAAGCTCAAGCGTTCGGTCCCCTGTGTCCACAGAGAGTTTCTCAACAAACTCCAGCACCACTTTCCCTGCGTCCACCCCCAGCATCTCTACCATCTCAGACAGCACATCTACTATCTCCACTCAGAGCAAGGCTACAAGCTCAGACATCAGATCTCCTCCACCCAGAGGAATCCTCAAACACACCTCCAGCTTAAGCTCCAACGACGCCAATGTCAAGAGCCAACTGCCCCAACCCATCAGCCGCCTCAGCTCCATTCCCTCCAACACTGCTGCAGAAAAAACTGCAGCCGTAACCCAGCTGAATACAGAGTCCAATATCAATTCAAAAGATGAAAAATTACAGAGTTCCTCTTCACCGCTGACAGCGACCTCGCCAAAATCACGTTTACCAGTGAGATCTCCAGTACCTTTGAATGGTTCAGAGCAGACAGCACAAGAGAAGCCAAAAATCCAGCCGCGGCTGAGTTTGACTTCCAGCACACGGTCAGAGGACGAGCTAAAAAACACCTCCATATCACACACAGCCAAGCAAAAACCTGAAAACCATACTAACACCAATAGATCAACAcccacaaaaacagaaaaccaaaagatgAACGGTCAACCAAAAACAGAACCTCTGTACGTTCCTACACCAACTTCCACATCAACACTGAACAGCCCATTAAATGAGACCATTAGTCCTCAAATCTCACCGCAAAAACTGAAGGAAGAGGAGAATAAGATGTTCAAAAAGGACATTGAAAAGACACAGGCACAACGAGATCATCCTCAGAACATCTTCGatcagCATGACTATGAAGCCACCAACAAAGTTGACCCAGCCTTGAGTTCTCAAATGGTAGATGCTCCACCCACTTTTAACGCAAAGACGAAGATCAATTTGGAACCTGAGGACCAAAGACATCCTGATATGGTAAATTATTCTGCTCCAAGCCCCACTGAGGAGCAGGGAGACTCCATTGCGAAAGTTCTGGAGTGGTTCAGCAGGAGCTCGGACAGCAGCGACAAGCTAGGGTTTGAGGGCAGTGTGCAAGACATGGAGGATGATGCAAAAATCGACGACATTGACTTTGATGACGGGATAAACGTAAGACCGAAAGCAGAGGATAACGTCTATTTGATTATTCCAAGACAAAGCCATGAGAATACTCCAGAAGCGAATGAGGTGTTTTTGAAGGACACTGACTGGGGGGAGGAGCTGAGTGTGGACGAGCCTGAGCCAGAACCTCCTAGAAAAACGTCCTTAAAAGATGTTAAGGAACAAAAGTTTGAACCTAAGTCTTCGAGAGTTGAACAACTCCCTGTTGCTGGATCTTCTACTTATGGTTCTTTTCAGACAGAGAATACTGCTCATACGTTTAAGATGGACATGTCTGAAAAAGCAAGTTCAAAAGAGAAAGTACCAGAGATAGTGAACAAAAAAGAAGAGATAAGAAATGTTGACAAGCTGGAAAGCACAGGCAGTAAACTAATTCAAGCACAACAGAGCGAGACAGTAGACCTTGAAGAGAATCAGCCACCAAAGATTGCCAATTTGAAGACTTTCTGGGAAAGAGGCAACGCTGGTCCAAAGATCCTGGTTAGCAGATCAAACATGGCTTCTGAGAAGGAAAACAAACCACTCAAACAAAATGAGGTTGGGAAGAAAGTGGAAGATTACATAGAGGAACCACCCAGAGTTCAGCTGAGTTTAGAAGATGCAGTTGTTGAAACAAAGGATCAAGCAAGTGTGAAGAAAGTTTTGAATGTAGACGAAAGAGTAGATATTGTCAGCACAGGACCTAATGTTGATAAATATGAACAAGAAACCATTTCTAAAGATACGGAACGACCGTGGAGTTTCACTAAACTAAAGAAAGATCCAGTGGTTTTCCACGGCCCTCTAGAAAGAGACGACATTTCTCCAACTTTGCAACTGAAACCATCCTCACCTTCCCTTGACAGTGGTTCCTTTTCAGGAGGCCAGACCGCTGAAAATAAGAGAGAAGCCATGAGCATTAACAGTAGTGAGGGAGATCGCATGTCCCCTGCATTACTTACAGGGAAGTTCGACCACAAAGCAGAGATTGAAGATAAAGAATCACAAACCAAACCTGGATCTCCTCCCAAATCCAGCATTCCCATCCAGCAGCCAAATCCAGTCTCATTACCGAAGCAGCAGAGTGGGCAGCAGTCAGACAACAGGGCGGAGAGGATAAAACAGCTTAAAATGTTCTGGGAGAAAGAAAAATGGGAACCCAAGATATACGTAagaccagcagcagcaggaggcgATGACTCCAAGTCACCTATGACCTCCTCTTCCAAACTAAACAAACGATTTACAAAGTCAGAGTTTGATCTCCGATACATAGGTACCGATTTTGATGATGACCCTGAGGACAATGGACCAGGTAGAGGAACTCAGTCTCCAAATTTCACTGTTCTTCCACTCCGAGACAGAACTGACAAGTCAGGCATAGCAGAAAGCATGAACAGTTCACAGTTCAAGAACCTTCGAGAGTTCTGGGCAGGGACTTCCTCCAAGCGCTCACCTGCCTTTGAGAGCAAAATCCAAAGCCAAAGACCTTTAAGCCCAGAAGTAAAGCCTtcaaagacagagagaagctTCCAGTCATCTCCAAAAGACAGGAGTCCTGCCAAAAGACTTGATTCTCCTTCAGGTGAGCCAGACCTTCTGAGATCATCTCATTCATCTCAAACAAGGAGAAGCTCACAGTCATCTCTGAAGGACACAGTTCCTCCTAAACCTCTAGGTATCCTCAAGGATAAGGATTCAAGGCAACAGGGTAGAAGAAGCAGTAAAGGAATGTTGAACAGTAAAGGAAATTCTCTTCGGCGTGCCACTAGTATGTTCTCATTGAATTTGGATGTTGATGATGACGATGACGACCAAGGTCAAGAATCGAATTTGCAATCCAAGAAAGCACCTGACGCAAATCTCGCCCAGCCGAGAAAGGCAGCAGAAGTTAACATGTCACCGTCTAGGAAGACCCCGGAAGCTAATTCACAAGTCAAGAAGTCTCAGTTTGAAGTCACTAAAGCCAAGGAGAAAGTCGGTGAAGGAAAACCCCCACGCTACATTCCTGAAGATCCCGATTCCCAACCTCTTGCCAGGTCTTTCGTTCCACGGGACTACCAGCATTACCTGGGAATCTCAGAAGACAGACGTATGTTCACTCCTCCCCAAATCTCCGAGCAGAAGTGTGAAATAGTCTGCACCCCATTCCAGACATCTCCAGAGACAGGCTGCAGCCCGAGGTGCTCTCCAGTGCAGGCTAGCACTCCGCTGGGCTCTGCAGAGCTCCGGGCCAGGAGAGGGAGCCTGGGTACTCGGCCGAGTGCATACAGCCCTGAAGATCTCAGCCAAGATACTTTACATACAGTGGACTCCTGGTCCCGTTCAAACCGGCCAAGTACAAACCGTAATGAGGAGAACCCTGTTCAGAGTGCGCTCAGACGAGCTGCTGCCAGACCCATTTACCATAAAAGCCTCGAAGACCTTACTGCAGTACCAAAATCAACCAGGAAAAGCAGTCAAGTGGATGAGTCTGTGCCAGATAGCTATGATGTCTCCAGCACTCCATCCCCACCTTCATCCTCCTTCTCAGACCCGGAGCACCTGAGGAAACTCAGCAAATCCGTTCCCTCTTTCCTGCAGAAGGAGAATGATGAAGGAGAAAGTGACTCTACCTCAGATTACAGTTCTCCTAGTGGCATGCACTGGAGGAATGGTGGACCCCGCAGTCATCTTAGCAGCAACTCTGTCTCTGCATCTTCTGTTAGCGGGAGCGTGATGAGCATCTACAGCGGAGACTTCACCAGTGTCGAAGTTCAGGGAACCATCCAGTTCTCTCTCAACTATGTGCAGAAGCTGAGGGAGTTCCACATCTTTGTGGTTCAGTGCAAAAACCTGGCTGCAGTAGATCCCAAGAAGAACCGCTCGGACCCGTATGTTAAAAGTTATCTAATCTCTGACTCTTCCAATctgggaaaaagaaaaacatcagtGAAAAAGAGGACGCTGAACCCTACATACAATGAGATTTTAAGGTATCGAGTTCGGATGGAGTATTTAAAAACGCAGGTTCTTAACCTCTCTGTTTGGCACAATGACACGTTCGGACGCAACAGTTTCCTGGGAGAGATCGAGATTGACCTCTCTACGTGGGATTTCGGGAACACCAAGATAAAATCTTTATCCCTCAAATCCAGGACCACGAGCAGCATCCAGCCTGCAGACGACCGAGGCGAGATCAGACTGGCTGTCCGTTTCTTACCGCAGCTCACCCACTCAAAGACAGTCCCCAACTCAGGTGAAGTGCATATCTGGGTTAAAGACTGCAAGAACCTGCCCTTGATCAGAGGAGCGTCTATAGATCCATATGTGAAATGTTTTGTGCTGCCGGATACCAGCAAAAAGAGCCGTCAGAAGACGCGGGTGTTAAAGAGGACGGCGAACCCTGTGTTTAACCACACCATGGTGTACGACGGCTTCAGAGCGGAGGACCTGAAGGAAGCCTGCATAGAGCTGACCGTGTGGGACCGGGACCGGCTGGCCAATCATCTGCTGGGAGGGCTGCGGATGGGCCTGGGAACAGGTAAAAGCTACGGTGTAAATGTGGACTGGATGGACTCCACTGCAGAGGAaatggcattatgggaaagaaTGATGGAACTGCCAAATGAATGGATTGAGGATGTCTTGCCGTTAAGAATGCTGACCCCAGCTAAAAATACATGGAAATAACCAAATCAAAACTGCTAAAcagagattatatatatatttatatatatattacaactttaattaCTCTGCATTTCTAATAAATTAgtatatatttgcatatgtttttttactgCACTTTCATACTcgccttattattttattttgttccaaCTAAAATCTACATTTGAATAAATTCACCCAGTATCTTACATGA

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15733 lncRNA upstream 89458 19359898 ~ 19360104 (+) True G11673
TU15724 lncRNA upstream 142995 19274881 ~ 19306567 (+) True G11668
TU15728 lncRNA upstream 174821 19274120 ~ 19274741 (+) True G11671
TU15730 lncRNA upstream 174821 19274173 ~ 19274741 (+) False G11671
TU15709 lncRNA upstream 203047 19241792 ~ 19246515 (+) True G11658
TU15765 lncRNA downstream 46421 19535675 ~ 19536380 (+) True G11678
TU15797 lncRNA downstream 177706 19666960 ~ 19667264 (+) False G11703
TU15819 lncRNA downstream 177706 19666960 ~ 19669244 (+) True G11703
XR_002650594.1 lncRNA downstream 557573 20046827 ~ 20063468 (+) True LOC111193550
TU16039 lncRNA downstream 569282 20058536 ~ 20147053 (+) True G11856
XM_007260535.3 mRNA upstream 4731 19412807 ~ 19444831 (+) True LOC103043893
XM_007260541.3 mRNA upstream 4731 19412807 ~ 19444831 (+) False LOC103043893
XM_007260536.3 mRNA upstream 4731 19412807 ~ 19444831 (+) False LOC103043893
XM_007260539.3 mRNA upstream 4731 19412807 ~ 19444831 (+) False LOC103043893
XM_007260542.3 mRNA upstream 4731 19412808 ~ 19444831 (+) False LOC103043893
XM_022674722.1 mRNA downstream 28359 19517613 ~ 19535102 (+) True LOC103047344
XM_007260550.3 mRNA downstream 191620 19680874 ~ 19753953 (+) True LOC103047658
XM_007260551.3 mRNA downstream 191620 19680874 ~ 19753953 (+) False LOC103047658
XM_022677886.1 mRNA downstream 267282 19756536 ~ 19762235 (+) True LOC103025032
XM_022674772.1 mRNA downstream 284484 19773738 ~ 19777715 (+) True thyn1
TU15744 other upstream 25498 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 2309783 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 3489184 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 3680319 15758762 ~ 15769243 (+) True G10838
TU14654 other upstream 3685158 15758762 ~ 15764404 (+) False G10838
TU16384 other downstream 1473795 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 1477034 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 1486950 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 1970596 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 2840465 22329719 ~ 22341513 (+) False spa17

Expression Profile