RNA id: XM_022674722.1


Basic Information

Item Value
RNA id XM_022674722.1
length 2196
RNA type mRNA
GC content 0.52
exon number 9
gene id LOC103047344
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 19517613 ~ 19535102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGCGGGTCTTTAAGGGGCGCGCGGGGAGAGATGCTGCAGGAGGATCCGGACTCTGAGAGACTGATATTACCTGCTGCTGCGGTGAGAGATTTATCACAGGTTATACCTGCTGAAGAGTCGACTGTGGACAGGAAACAGAAACCATGTCTAAGGGACCAGCGGTCGGCATTGACCTCGGGACCACCTACTCATGTGTGGGGGTCTTTCAGCACGGCAAAGTCGAAATCATTGCCAACGACCAGGGAAACCGCACCACGCCCAGCTACGTCGCCTTCACCGACACCGAGAGGCTGATCGGAGACGCTGCCAAAAATCAAGTCGCCATGAATCCCACCAACACAGTGTTTGATGCAAAGAGGCTGATTGGACGGCGGTTTGACGATGCGGTTGTCCAGTCAGATATGAAGCACTGGCCCTTCACAGTAATCAACGACTCCACACGCCCTAAAGTCCAGGTGGAGTATAAAGGAGAGACCAAGGCGTTTTACCCGGAGGAGATATCCTCTATGGTGCTGGTGAAGATGAAAGAGATTGCGGAGGCGTACCTTGGAAAGACGGTCACAAATGCAGTGGTTACTGTACCTGCGTACTTTAATGACTCTCAGCGTCAGGCTACAAAGGATGCAGGGACCATTTCTGGACTAAATGTCCTTCGAATCATCAATGAGCCAACAGCAGCTGCCATCGCCTACGGCCTGGACAAGAAAGTGGGTTCAGAAAGAAACGTGCTGATTTTCGATCTTGGTGGCGGCACGTTTGATGTCTCtatcctgaccattgaagatgGCATCTTCGAGGTCAAGTCCACAGCTGGAGACACTCACCTGGGCGGTGAGGACTTCGACAACCGCATGGTCAATCACTTCATCTCCGAGTTCAAGCGCAAATACAAGAAAGACATCAGTGACAACAAGAGGGCGGTGCGTCGTCTGCGGACGGCCTGCGAGAGAGCGAAACGCACGCTCTCCTCCAGCACTCAGGCCAGCATCGAGATCGACTCGCTCTACGAGGGCGTCGACTTCTACACCTCCATCACCAGGGCTCGCTTCGAGGAGCTGAACGCCGACCTGTTCCGCGGCACGCTGGACCCTGTGGAGAAATCCCTCCGTGATGCTAAACTGGACAAGTCCCAGATCCACGACATCGTGCTGGTTGGAGGGTCAACTCGCATCCCTAAAATCCAGAAGCTCCTGCAGGATTTCTTCAACGGAAAAGAACTCAACAAGAGCATAAATCCAGACGAGGCTGTTGCGTACGGTGCAGCTGTTCAGGCAGCTATTTTGGCTGGAGATAAATCTGAGAACGTGCAggacctgctgctgctggacgtcactcctctctctctgggtaTTGAGACTGCTGGTGGAGTCATGACCATCCTGATCAAGCGTAACACCACAATCCCCACCAAGCAGACGCAGACGTTCACCACATACTCAGATAATCAGCCTGGTGTGCTCATTCAGgTTTATGAGGGTGAAAGAGCCATGACTAAAGACAACAACCTGCTGGGGAAGTTTGAGTTAACAGGAATTCCTCCTGCACCCCGAGGTGTTCCTCAGATTGAAGTCACCTTTGATATCGATGCCAATGGGATCATGAATGTCTCTGCAGTAGATAAGAGCACTGGCAAGGAGAACAAGATCACCATCACCAACGACAAAGGTCGTCTCAGCAAAGAGGAGATTGAGCGAATGGTCCAGGACGCTGAGAAATACAAGGCTGAGGACGATGTCCAGAGAGACAAAGTGGCCGCCAAGAACGGGCTGGAGTCATACGCCTTTAACATGAAGTCCACGGTGGAGGACGAGAAGCTGAAAGGAAAGATCAGCGATGAGGACAAGCAGAAGATCCTGGATAAGTGCAATGAGGTCATCAGCTGGCTGGACAAGAACCAGACTGCTGAGAAGGACGAGTTTGAGCACCAGCAGAAGGAGCTGGAGAAGGTGTGTAACCCCATCATCACCAAGCTGTACCAGGGTGCAGGGGGCATGCCAGGAGGAATGCCCGAGGGGATGCCAGGAGGATTCCCAGGAGCTGGAGCTGCACCTGGAGGAGGAGGATCTTCTGGACCAACTATTGAAGAAGTTGACTAAATCGTTCTTCGACATTTTCAGCTCGTTTCTTTGTTGCTCTCAGCTGTTGTTCTTTGGTGGCATGTTTCTAAACtcatattaaaggagaactccagtgtaa

Function

GO: NA

KEGG:

id description
K03283 HSPA1s; heat shock 70kDa protein 1/2/6/8

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15733 lncRNA upstream 157509 19359898 ~ 19360104 (+) True G11673
TU15724 lncRNA upstream 211046 19274881 ~ 19306567 (+) True G11668
TU15728 lncRNA upstream 242872 19274120 ~ 19274741 (+) True G11671
TU15730 lncRNA upstream 242872 19274173 ~ 19274741 (+) False G11671
TU15709 lncRNA upstream 271098 19241792 ~ 19246515 (+) True G11658
TU15765 lncRNA downstream 573 19535675 ~ 19536380 (+) True G11678
TU15797 lncRNA downstream 131858 19666960 ~ 19667264 (+) False G11703
TU15819 lncRNA downstream 131858 19666960 ~ 19669244 (+) True G11703
XR_002650594.1 lncRNA downstream 511725 20046827 ~ 20063468 (+) True LOC111193550
TU16039 lncRNA downstream 523434 20058536 ~ 20147053 (+) True G11856
XM_022674699.1 mRNA upstream 28359 19449562 ~ 19489254 (+) True LOC103046737
XM_022674705.1 mRNA upstream 28359 19449562 ~ 19489254 (+) False LOC103046737
XM_007260545.3 mRNA upstream 72782 19412808 ~ 19444831 (+) False LOC103043893
XM_007260550.3 mRNA downstream 145772 19680874 ~ 19753953 (+) True LOC103047658
XM_007260551.3 mRNA downstream 145772 19680874 ~ 19753953 (+) False LOC103047658
XM_022677886.1 mRNA downstream 221434 19756536 ~ 19762235 (+) True LOC103025032
XM_022674772.1 mRNA downstream 238636 19773738 ~ 19777715 (+) True thyn1
XM_007260555.3 mRNA downstream 291178 19826280 ~ 19939463 (+) True igsf9b
TU15744 other upstream 93549 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 2377834 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 3557235 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 3748370 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 1427947 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 1431186 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 1441102 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 1924748 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 2794617 22329719 ~ 22341513 (+) False spa17

Expression Profile