RNA id: XM_022674847.1


Basic Information

Item Value
RNA id XM_022674847.1
length 2600
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC103025963
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20067514 ~ 20439549 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGTGCTCCGGCAAGGTTGCAAAAAGACGTTCTGGCAACCTGGGGTGTGGCGTTGATAAGGTGGGCGGGGCATAGCGTCTGAGACAGGAAGTACGTCAGAGAAATCGTAAGGTACCTGAGGAGCAGCAAATTTCACTCAACACTAATGAGGGTCAAACAGCATTACAGAGGTGATTTAGCGCCGCCAGTCTGAAGCAGGTGTTCATCATGGCGAGCTCGACCAGCGGATCTCTCTGTGTTCCTCTGCTCCTCTCCCTGCTGTCTGCGGCTCTTCTGCCTGAAGGAGCTTCCCAGACCATAACAGCACAGGGTCAGAACCTGGTGACGGGAAACGTCTCGGTGATTGAGGGCGAGACGGCGACCATCAGCTGCCGGGTGAAGAACAACGACGACTCGGTCATCCAGCTCCTCAACCCCAACAGACAGACCATCTACTTCAAAGACGTCAGACCCCTGAAGGACAGCCGGTTTCAGCTGGTTAACTTCTCCGACAACGAGCTGCGCGTGTCGCTGTCCAACGTGACGCTGTCGGACGAGGGACGGTACGTGTGCCAGCTCTACACGGACCCCCCGCAGGAGGCCTACGCAGACATCACCGTCCTGGTTCCGCCAGGCAACCCAATCATCGAGTCCCGCGAGGACGTGGTGAGTGAGGGGAATGAGACGGAGATAACCTGCACTGCCATGGGCAGCAAGCCTGCCTCCTCCATCACGTGGATGAAGGGAGACCAAATCCTACAAGGTGAGGAGACGGTGGAGGAGACGTACGACAGGATGTTCACCGTCACCAGCCAGCTCCGGCTCACCGTCTCCAAGGAGGACGATGGAGTGCCCGTCATCTGCATCATTGACCACCCGGCCGTGAAGGACTTCCAAGCACAGAAATACCTGGAAGTGCAATATAAACCAGAGGTGAAGATTGTGGTGGAGTTTCCACAGGGTCCCACGAGGGAAGGGGAAAACCTTGAGCTGACGTGCAAAGCCAAGGGCAAACCACAGCCCCATCAAATTAACTGGTTGAAAGTGGATGATGATGTTCCCTCCCACGCGGTGATTACAGGCTCTGATCTCTACATCGAGAACCTCAACAAGTCCTACAACGGAACGTACCGCTGCGTGGCCTCCAACTTAGTGGGAGAGGCTTACGATGAATACATCCTGTATGTGTACGattcaAGAGCGGACGGAGGGCCGCAGAAAATCGATCACGCAGTCATCGGCGGAGTTGTTGCAGTGGTTGTGTTCGCCATGCTCTGTCTGCTCATCATTTTGGGACGCTACTTCGCCAGACACAAAGGCACCTACTTCACTCACGAAGCTAAAGGAGCGGAGGACGCTGCAGACGCCGACACAGCCATCATCAATGCTGAAGGAGGACACAACAACACGGACGACAAGAAGGAGTACTATATCTAACTCTGACTAGAGCTGCTAGCCACCCCACCCCTCCCTGCCGGACCAGGAGCCTGCGGGGGTCCTGCTGGATTAGGGAGGGAGGGCTCGGGTTAGTCcaagctgtatttttgtttctttttttgggaTTGGAGGGTCGACCCTGCGCagcagaagaggaggagaaaggagAAGAAATGAGAGGAGAGGAGCGCTGCCATCGAGACTGAAGAGGTGTGGGATGGAGGAGCGTGAAGGAGAGCTCACTTTTAGAGAAGCTTCGCCATCCAACACCTCCCAACACCTCCTGCTGGTGCCggttttgttcagttttttcGACATTTTCgcgagggaaaaaaaaaaaagaagagaaatttTGTGCCTTGTTCTATTTATTTAGATGGAAAACACCTACTTTCTCATTCCCGCACCCACGAGTTGCGTACTGCTGGCTCTCTTCATACAGCAGGCCCCGTCATGCTGTGCTTTTTCGACGCCCGCACACACTCTTCAGCTTTCACATGCTCTCTCCTGCCAGCTGAGTGGAatacacaccatatacacatacatatatacatatacacacacacgcacacaaacacacactagttCAGACATGAGATTCAGTCCTGGAAGTACTGTTTAGGTCTCTTTAATGACTTGTTTCTGAGTGAATGACAGTGGATGACACTGTTGTGACAAACCTGAGCTGAAACTCATTCCGGTCCTCTTGTgttgttgcattatttaataGCCGTTCCGTGTGTGCAAATAATCTGCTTGTGTTAGTATTCATTCATTAGCGCCATGCCGTAAATGCCCACCTAGCAGTTTAATGGTAATTGCATCCgtgcattaaaaatgaatgccaAAGCAAATACATTAAATTGGCCCCGGTTCAAATGGATAGAGGAACTCTTTAATGCCAGCAAGCCCCCCACCACCGTCCTCATATCATAAACCAGACATGCTCCAGACTATAAAGTAGCTCCTGCTCCGTTTCTGGTTTCAGAAGATGGCATCAGGTGTAGTCCTCAAGGTTGGCGAGCTGCCACTGGCTGTAAGATTAAGCACTAAAGGTTTGCGTTTATGTAAACTcgctagggctgcacaatatatatcgGTTAAGCATTGTCATCGCGATGTGAGCatgaactctggtgtaaaatggacttttgttgtagtaaaacatgataaaaagttcttac

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15984 lncRNA downstream 289799 19773629 ~ 19777715 (-) True G11821
TU15957 lncRNA downstream 398272 19666960 ~ 19669242 (-) True G11801
TU15962 lncRNA downstream 399001 19639485 ~ 19668513 (-) False G11801
TU15961 lncRNA downstream 399001 19666960 ~ 19668513 (-) False G11801
TU15938 lncRNA downstream 517635 19549678 ~ 19549879 (-) True G11790
TU16213 lncRNA upstream 74012 20513561 ~ 20513760 (-) True G12018
TU16328 lncRNA upstream 249786 20689335 ~ 20723912 (-) True G12115
TU16332 lncRNA upstream 281093 20720642 ~ 20731920 (-) True G12118
TU16334 lncRNA upstream 289094 20728643 ~ 20755287 (-) True G12120
TU16346 lncRNA upstream 400657 20840206 ~ 20844256 (-) True G12131
XM_007260554.3 mRNA downstream 265191 19786123 ~ 19802323 (-) False jam3
XM_015608653.2 mRNA downstream 283874 19777857 ~ 19783640 (-) False vps26b
XM_007260553.2 mRNA downstream 283879 19777857 ~ 19783635 (-) True vps26b
XM_022674751.1 mRNA downstream 294898 19764372 ~ 19772616 (-) True acad8
XM_022674736.1 mRNA downstream 426434 19575806 ~ 19641080 (-) True LOC103024723
XM_022677893.1 mRNA upstream 473045 20912594 ~ 20943980 (-) True dixdc1
XM_007231430.3 mRNA upstream 773684 21213233 ~ 21219097 (-) True LOC103030049
XM_022674963.1 mRNA upstream 877952 21317501 ~ 21450195 (-) True sorl1
XM_022674978.1 mRNA upstream 1017582 21457131 ~ 21465432 (-) True bco2
XM_022675004.1 mRNA upstream 1034863 21474412 ~ 21482404 (-) True sdhd
TU16077 other downstream 265301 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 828537 19238906 ~ 19238977 (-) True trnap-cgg
TU15837 other downstream 955942 19108713 ~ 19111572 (-) True G11719
XR_454920.3 other downstream 3713680 16323033 ~ 16353834 (-) False LOC103036671
XR_002650882.1 other downstream 4165082 15762347 ~ 15902432 (-) False LOC103030038
trnak-cuu other upstream 535533 20975082 ~ 20975154 (-) True trnak-cuu
TU17143 other upstream 1554258 21993807 ~ 21994751 (-) True G12767
XR_002650646.1 other upstream 3099708 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other upstream 3101785 23541334 ~ 23553970 (-) True LOC111193708
TU17895 other upstream 3344922 23784471 ~ 23803818 (-) False LOC103035686

Expression Profile