RNA id: XM_022674851.1


Basic Information

Item Value
RNA id XM_022674851.1
length 4007
RNA type mRNA
GC content 0.51
exon number 22
gene id LOC103035031
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20522878 ~ 20731709 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

accCCGAAAACACGCGCTTTCAGACAAACTCCACACTGAGAGGAATTAACACTAATAACAGCCGCAGAGAAACGACCTGTTTTACCCGGTGAATGCGATGTTTCAGAGCAGGGAGATCCTCTGGGTGTTTATATTCCTCGGCAGCGCAGtCTCTCTGCAGGTGGACATCACGCCTGCACAAGGCGAAATCAGCGTTGGAGAGTCCAAGTTCTTCCTGTGTGAAGTCGTAGGCGGAGTGAAGGGAATTGACTGGTTCTCGCCCACTGGAGAGAAGATCGAACCCAACCGGCAGGATATCACCGTGATCCGCAATGACGAGACGTCCTCTACCCTCACTATCTACAACGCTAACGTCGATAGCGCTGGCACGTACAAGTGTGTCGCCACCAGCGGCGACCAGCAAGCCGAAGCGACTGTCAACGTGAAGATATACCAAAAAATTGCCTTCAAAAATGCTCCATCCCCCCAAGAGTTTACAGAAGGAGATAACGCTATTATCGTGTGCGACGTTGTGAGTTCTCCTCCTCCCACCGTCATCTGGAAGCACAAAAGAGTAAAAGTCCAGTCTGAGAAAGATGTTCGCTTTAAGATTTTGAACAACAACCACCTGCAGATAAGAGGAATAAAAAAGACAGATGAAGGTGTGTACAACTGCGAGGGGCGTGTCATGACCCGGGGTGAGATCGACTTTCGCCCAATCCGAGTGGTGGTGAACGTTCTGCCGACTGTCAGAGTCCGTCAGGCTGAGGTGAACGCCACGGCTGACCTGGGTCTCTCCGCCATGCTGGCCTGCGATGGAGACGGCTTTCCAGAACCTACAGTCATGTGGAAACGTTCTCTCAGGAACGACGTTCTGCTGGAGAGCGGGGATAAGTACAGCTTCAATGAGGACGGCTCGGAGATGACTATAATGGACGTGAAGAAGTTGGATGAGGGAGATTACACCTGCATCGCCTCCAACAAAGCCGGCAAGGCTGAAGAAGAAGTCAGCCTCCGAGTCTTTGtcaAACCCAGAATCACATTTTTGGAGAACCAGACCGCCACAGAGATGGAGGAGCAGATGACGTTGACGTGCGAAGCCACGGGAGATCCCACGCCCACGATCACGTGGAGCTACGGCACACGCACGTTCACCGAGGGGGAACAGGAGCATCTAAAGAGGATTTATCAGGCCTCTTGGACTCGGCCCGAACAACACAAGAGTGCGGATGGAATGGTGGTGGTGCGCAGCGACGCTCGCGTGTCCTCCCTCACCCTGAAGTACGCTCAGTACACCGACGCCGGAGAGTACCTCTGCACCGCCCGCAACGCAGTCGGAGAGACCTCTCAGCACATGTACCTGGAAGTGCACTATGCCCCCAAAATCCTGGGCTCGGTGGCGGTCTACACATGGGAGGGAAACCCGGCCAACATCAGCTGCGAGACCCTGGCTCATCCCAGCGAGGTGTCTATTGTGTGGCTGAGGGATGGATTCACGCTGCCCAATGCCAACACCTCCAACATCAAGATCTATAACACTCCCTCTGCCAGCTTCCTGGAGGTTAACCCGGACTCCCAGAACGACTTTGGCAGCTACAACTGCACCGCCTCCAACGTGATCGGGACAGAGTCCAAAGAGTTCATCCTCATTCAGGCCGAAGTGCCCTCGGTACCAGTCATCACTCAGGTGCAGCCCTACTCCAGCACGGCTCAGCTGCTGTTCGATGAGCCTGAATCTTCAGGAGGAGTTCCTGTGCTTAAGTACCGCGCCGAGTGGAAAGCCATGAACCGGAATAACTGGGTCCAGAGAGTCTACGAAGTCAGAGAAGGAGGCTTAAACGCGATCACAATCACCGGCCTTAAACCAGAAACTCAGTACGAAGCCAAGATGTCTGCGATCAACGGtaaaggagagggagagagcagcTCTACGGTCTCCTTCAAGACGGAGCCTGTTCAAGGGGAACCCACCCCCCCCAAACTGGAAGCCATCCTACAGCCTAAAGGCAACGCCCTCAGAGTTAACTGGGTAAAGCAGGACGACGGAGGCTCACCTATCACTCACTATCTCATTCGATACAAAGCGAAAGAGGATCCGATATGGAAGCCAGAGATCCGGCTGCCCAGTGTGAGCGAGTACGTGCTCCTGAGTAGTTTAGACTGGAACACAGAGTACGAGGTGTTCGTAGTGGCCGAAAACCAGCAGGGCAAATCGAAACCTGGCATCCTGACCTTCCGCACATCCTCAAAGCGCGACGCCATTCCAGAATCCATGGAGGACGGTGCAGGACTGAACACAGGGGTCATTGTTGGGATCctggtgctggtgtgtgtgctgctgctcCTGGCTGTGGATGCCACCTGCTGCTTCCTCAACAAGTGTGGGCTGCTCATGTGTCTCTGCGGAAAGCCCAAGACGGGTGCGAAGGGCAAGGACATGGAGGCTGGCAAGGCTGCGTTCGTTAAGGACGATTCCAAAGAGCCCATTGTGGAAGTGAGGACTGAGGACGGGCTCACGGCCAATCACGACGCAGGAGGGCACTCTGAGCCCAACGAGACCACACCCCTGACAGAGCCTGAGCGACTGGCCGAAGCCGCGGCCACTGTGGTGGACTTGCCCTTATCAATGGCCACAAACTCAGACACAGTTACCGACACCTTTGACCTTAGCCAGAGCAGCCCCGTTAGCGAGAGCACCACCCTAACGTCCAGCCTCACGGCTCCGCCCCCTGATCCCAGACCTGCCCTGACCACAGGCCCTGAAACCAGCACCCCTAAAAGCTTCTCCCAGCCTCTTTCCCGCTCCCTGCTCTCCTCCGATGTTCCTTTGGTGGACCTGGCTGATCCTTTACCTGTTCAAATCCCAGAAGCCCCTTCCAACCAATCAATCCAGGCAGATTCTCAGATAACATCTCCTGATTTCACCAATCAGGAGCCTCCTTCTCCTAGTCttagttttagcacagaaaacacACCTAAAGAACCAGAGAACGATGCTGAAGAACTAGAGACGAGCCTGTTACAGAATTCACACGAACCCGTCCCTCAGAAAGTCCCCTCAATGAACCATGAGCTCCATCTAGATGAAGGAACCCCCCAGGCTTCAGAAACACACCTCCCCCAGGATGGCCCCGGGCACGCTCTGGGCACAGCTGGCTCCAGCGGCCCATCTGCTCCACAGAACGAGAAAATCCACGAAGACGAGTCGAGCAGGTCTGAAGACGAAGATTTGAAGAAGCTCCAGTCGGAAGCAAAGTCACCCATCGCCCTCTCGCTGGCGAACGACGTGGAGAGCAAGGCGTGATCAGAGCTGGCGAGctctgaaaggaaaaaaaataaaagaagaagaagaagtggtAGCGTCGCGGAAATGAACACAGGAACGTTCACTCTACAGTGCCCTTAacaaagcttttatttatttaattttttgtctgttttttttttttttttcaagcaaaACGAGTGATGAGTTTGAGAAAAGTGTGAGAGTTTTGTTGCACATTCTTGAGACTGGAGTGTACGGGCGTACgcgataaataaaaaaaaatgcgcCTCTTTCCGTTTCTCGTTCGTTTCCGTTGAAAAGTTGAAGTTATAAAAAGATGAAGTTAAACCTCAAGAAGAAACTGCTAATGCTGAGGCTGAATTTACGAGTTTGTTCTGTTGAATTCAGATAAACACGACAGAGAGTTCGTATCGCATTCAGACTCCTCCCAAAATATctctcaaaagaaaaaaagaagggtgttttattttgttactttgtttctttgtttgtttctttgcttctttgtttgatttttttctggAACACGGAAAACACGGGGCATTCAGGAGAATTTACAGCGCGTGTTCATATACAGTttgttcatatatataaaatgctctagacattatattttattttattttatttacttgctACATTGTTGAAATGTAAATGATTGCtcctatttttttatcttgagtctctggagggctagtcttgttaaatagttcgattgtatattttatttacattacgc

Function

GO:

id name namespace
GO:0007411 axon guidance biological_process
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K06491 NCAM, CD56; neural cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16075 lncRNA upstream 34734 20446394 ~ 20488144 (+) True G11891
TU16039 lncRNA upstream 375825 20058536 ~ 20147053 (+) True G11856
XR_002650594.1 lncRNA upstream 459410 20046827 ~ 20063468 (+) True LOC111193550
TU15819 lncRNA upstream 853634 19666960 ~ 19669244 (+) True G11703
TU15797 lncRNA upstream 855614 19666960 ~ 19667264 (+) False G11703
TU16389 lncRNA downstream 260161 20991870 ~ 20992084 (+) True G12165
XR_002650607.1 lncRNA downstream 325044 21056753 ~ 21162746 (+) True LOC103030577
TU16398 lncRNA downstream 325155 21056864 ~ 21089666 (+) False LOC103030577
TU16418 lncRNA downstream 382146 21113855 ~ 21116020 (+) True G12187
TU16477 lncRNA downstream 439396 21171105 ~ 21171318 (+) True G12242
XM_022674824.1 mRNA upstream 507456 19952453 ~ 20015422 (+) True LOC103025662
XM_022674831.1 mRNA upstream 507456 19970305 ~ 20015422 (+) False LOC103025662
XM_022674825.1 mRNA upstream 507456 19981049 ~ 20015422 (+) False LOC103025662
XM_007260555.3 mRNA upstream 583415 19826280 ~ 19939463 (+) True igsf9b
XM_022674786.1 mRNA upstream 586176 19826280 ~ 19936702 (+) False igsf9b
XM_007231435.3 mRNA downstream 14320 20746029 ~ 20844121 (+) True LOC103032372
XM_022674870.1 mRNA downstream 120473 20852182 ~ 20900847 (+) False tmprss5
XM_015600778.2 mRNA downstream 140607 20872316 ~ 20874119 (+) True LOC103032051
XM_022674888.1 mRNA downstream 145200 20876909 ~ 20879031 (+) True LOC111193556
XM_022674881.1 mRNA downstream 152839 20884548 ~ 20886467 (+) True LOC111193555
TU15744 other upstream 1098814 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3383099 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 4562500 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 4753635 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 231340 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 234579 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 244495 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 728141 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1598010 22329719 ~ 22341513 (+) False spa17

Expression Profile