RNA id: XM_022674864.1


Basic Information

Item Value
RNA id XM_022674864.1
length 1963
RNA type mRNA
GC content 0.46
exon number 12
gene id tmprss5
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20852182 ~ 20900847 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gcagtgtgtaagactggtggaggagaacatgaaataaggaaataaaggaaataagTAGCATCTTTGTCTAATTTGATTTTCACAtagttactaaaaaaaaaagtttactcaGCAACGTAATCAAAgagcacagtgtaagggaacTAAAATTAACCTGACGTTGCTGCAATGTAAATGAGTGTGGGAGCTGGGAGTAGAGAATCACAGGTGGGCTATTGAGCACAAGATGTGCACAGGTGACTTGGCAGCAGATGTGGTCATGCAGGTAAATGATTACATTGTGCTTCACACCTGTGCACTCTGAGCTCACTCCACAGTTCATTATAAATAATATCTAGCTTGTAATCAGGTCAGTCAGTCAATGCAGTCAATGTGTGCATTGCAGAGTGTCAGTGAAGGTGCTGTAGATGTGATGGAGAACCCTGCGGCAGTCAGGCACTCCCTCCAGGCCGAGAGGATGAGCGTGGCTCGGGGGAAAGGAGGTCAGAACAGCCCCAGCTCCTGGTTCAGAGAGATTGAGGCTCCTCATCCAGTTTTTCATTCAGCGTCCACAAAAGTGTCCACCCAACGAGTGATACGAGTGTTGGCAGCTCTGTGTGCACTGGGGCTACTCGGAGGTGTAATTGTTGGTGTATGGTTTATAGTCAAACTCCTTTTAAAGCCTACCTCAACTCAGAGTCCTACAGGGTTGGGTGATACCAAAGAGACCTCCTTCTGCAACGTATCAGAGGACACCTCTGTGACTGACCCCAGGAAAGTGTTTTACAGAATCAGTGCAGAAAACTCTTTGCTAGAGATTCAGCTGGAGAAGCTTCAGACCTGGCTGCCTGTGTGCTACGAGCGCTGGAACTCCTCACTGGGGACCCTGGTCTGTCGGCAGCTGGGCTATCTGAGATTAACGAAGCACAAAGGGGTCAATCTGACTGACATTGGGCCAAATTACACCGATGGATTTGTTCAAATTGCTTCAGGACCTCAAAGCAATTTGGAAAGTTTATGGCAGTTCAGGGGAAGCTGCAGCACAGGAAAAGTTATAGCACTCAAATGTTTTGAATGTGGTACCAGGGCAAAGCTGCCCAGGATAGTTGGTGGTGTAGAGGCCACACCTGGCAGGTGGCCCTGGCAAGTGAGCCTCTACTACAGCAACCGTCACACCTGTGGAGGCTCCATCATCACCAGTCAGTGGATCGTTACAGCTGCTCACTGTGTGCACAActaCAGGTTACCTCAGGTTTCCAGCTGGGTGGTCTATGCTGGGATTGTTACAAGAAATACAGCCAAACTGGCTCAGTATACAGGATATGCTGTGGAGAAAATCATCTACAATAAGAATTATAATCATAGAAGTCATGATAACGATATTGCGCTGATGAAGTTGAGAACACCGTTGAATTTTTCAGACACTATTAGGCCAGCATGTCTACCACAGTACGACCATGACCTTCCTGGAGGAACGCAGTGCTGGATTTCAGGCTGGGGTTATACACAACCTGACGATGTTCATATTCCTGACACATTAAAAGAGGCTCCAGTGCCTTTAATAAGCACAAAGAAATGCAACAGCTCCTGCATGTACAACGGAGAGATCACGTCACGTATGCTCTGTGCAGGTTATACAGAAGGCAAAGTGGATGCCTGCCAGGGAGACAGTGGAGGCCCACTGGTTTGTCAGGATGATAACGTATGGAGACTGGTTGGAGTGGTTAGCTGGGGAACAGGCTGTGCGGAGCCCAATCACCCAGGAGTTTACACCAAAGTGGCTGAGTTTTTAGGCTGGATTTATGAGATGATAGAGAGCTACTGAAGGATGGAGTGAAATTGCAGTCCAACACCATAACCTACGGAATTCCTCCTTTTGCTGGATATTACAGACACCctcaagctttatttttttattgtaaaatatacagtttGCTATTCCAtttagatgtttgtaataaacttTGTGTTGTGTACCTTAAAA

Function

GO: NA

KEGG:

id description
K09636 TMPRSS5; transmembrane protease serine 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16239 lncRNA upstream 121604 20727543 ~ 20767399 (+) True G12038
TU16240 lncRNA upstream 133723 20728643 ~ 20755280 (+) True G12039
TU16235 lncRNA upstream 178325 20671034 ~ 20710678 (+) True G12034
TU16228 lncRNA upstream 269026 20562773 ~ 20619977 (+) True G12027
TU16224 lncRNA upstream 359566 20529047 ~ 20529437 (+) True G12023
TU16389 lncRNA downstream 91023 20991870 ~ 20992084 (+) True G12165
XR_002650607.1 lncRNA downstream 155906 21056753 ~ 21162746 (+) True LOC103030577
TU16398 lncRNA downstream 156017 21056864 ~ 21089666 (+) False LOC103030577
TU16418 lncRNA downstream 213008 21113855 ~ 21116020 (+) True G12187
TU16477 lncRNA downstream 270258 21171105 ~ 21171318 (+) True G12242
XM_022674881.1 mRNA upstream 2536 20884548 ~ 20886467 (+) True LOC111193555
XM_022674888.1 mRNA upstream 9972 20876909 ~ 20879031 (+) True LOC111193556
XM_015600778.2 mRNA upstream 14884 20872316 ~ 20874119 (+) True LOC103032051
XM_007231435.3 mRNA upstream 44882 20746029 ~ 20844121 (+) True LOC103032372
XM_022674851.1 mRNA upstream 157294 20522878 ~ 20731709 (+) True LOC103035031
XM_015600779.2 mRNA downstream 1429 20902276 ~ 20908807 (+) True pih1d2
XM_007231431.3 mRNA downstream 50496 20951343 ~ 20960236 (+) True LOC103030893
XM_022674920.1 mRNA downstream 51665 20952512 ~ 20960236 (+) False LOC103030893
XM_022674932.1 mRNA downstream 65425 20966272 ~ 20990064 (+) True LOC103033739
XM_022674940.1 mRNA downstream 93259 20994106 ~ 21053855 (+) True LOC103033418
TU15744 other upstream 1464939 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3749224 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 4928625 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 5119760 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 62202 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 65441 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 75357 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 559003 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1428872 22329719 ~ 22341513 (+) False spa17

Expression Profile