RNA id: XM_022674881.1


Basic Information

Item Value
RNA id XM_022674881.1
length 1920
RNA type mRNA
GC content 0.34
exon number 1
gene id LOC111193555
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 20884548 ~ 20886467 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tcgaataattgaaaaaatttatatcagattagtcaacttccaaaataatcattagttgcagccctagtgagCACTGGCCAGTTGGTGGTGCTATGTCCACAACCAAATTTTATCAAGAAAATGTTTCGCCTAGAACATGCTTCATATTAATGAGCTAGATATTaagagtttatttgttttttagttttttttgtttaatatataacaattctatttttttttatttctactaaTATTGCTACAGTGTGGATCACATTCAATCTAGTGACCAAAACCTAATTTggatttcaaatgaaaaataaagaatacagaAAAAGACATGGATCGTCAGCTTTTTAAACTGAAGTTACACAGTAATGAAATAATGGGGGGCAAGAAGTTGCTtaaatgttttaaggaaaaataTCCATTTCATATTATAATTTGCTTTCATATTAATTTTAggtgtgtatttatattttcagtctttataataaagaacaataaagGAATCTATAACTCAGCTAAATGTTTAGTACCAAGAATGTCactaatctaaaataaaatgatagtGTAATTGCTTTAATCTTACATTTCTTccattttattttctcatttaatgGTTAATACTTATAACACCAATCCTGTCTGTATGCTATTTTTATAAGTAAAGCACCATAGGCAACGTCTTATCGCCAAGGGTCTTTTAgaacagtataaatacaccagCTATAGGACCGTGCCCAGTGAGACTGAGGCTGCTGTTTTTTCATTGTGTCTCATATACTaaagtctctttttttcagtgggATTGATTGCTCATAtaatctgttttacataaattatactgtctttgtacttttttctattttcagaAATGCAGAACtcaggtaataataataataccctaAACATTAACTTTTCAAGAATTTTCATGCAGAAAGTGATGATGGTGCAGATTCTGGTGGGGATTTTCCTGTATGTGAACTGTTTGATGATATTTACCTTTCTAAAAAAGGAGATTTTTCGAGAGGACACTCGGTACATACTGTTCGCACAGACTCTATTGGTTGATTCGGTTTTATTGGTGTTGAGTGATGTGATGTTGATCTGGAATACTTACCTGTACCCTATCCACATGATTCCTTGTATTATCATCTGTACATTTGTAACTGTTCTCACCACTTGCACTCCACTGACTCTTGTGGCGATGTGTCTGGAGCGCTATGTTGCTATATGCATGCCTTTGAGACATGCAGACATCTCCACCAGCAGGACCAGATTACTTGGACTTCTTATCATATGGAGTCTCAGCTGCATAGCTCCTCTGTTCACTTTTGTAGCGTTTCTTGCTGTGGTCCACCCTGGTGCTCTGTTCTCCTCTGCGGTTTGTACTGTGGAGATATTATATGAGCAGGACTGGCAGGCACAAATGCGTATTGTAATTTTGCAGCTCCTTTTTCTTACTATGACCCTCATCATTGTCTTCACCTACATCAAAATTATGATTGCAGCCAGAGCTGCTTCCACGGATAAAAAGAAATCGACCAATAAGAGTCTCAGAACTGTGATCCTTCATGCCTTTCAGTTGTTTCTGTGtataatgcagtttttaaacccATATATTGAAATTGTATTCTTAAAGCTAGATATATCTGTATATGGTCAGTTGAGATATgctaattttgttatttttatcattGCGCCACGTTGCTTAAGCCCACTGATTTATGGACTGAGAGATGAAAAGTTTTtccatgttttaaaacattatgcttTGTTTGGTTTTGATACATTTTTCTCAGGATTGTTCAATAAGTGGAAAGTAAGACCTATTGAAACTAAAGCTTTGTGAAATATATCGTTTTTTACTATTAATGCTACAAATAATAATGCTTTCCTGCTCATCTATGGAAATCAATAAATCAGTGTTTGACATGA

Function

GO:

id name namespace
GO:0030031 cell projection assembly biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16239 lncRNA upstream 117149 20727543 ~ 20767399 (+) True G12038
TU16240 lncRNA upstream 129268 20728643 ~ 20755280 (+) True G12039
TU16235 lncRNA upstream 173870 20671034 ~ 20710678 (+) True G12034
TU16228 lncRNA upstream 264571 20562773 ~ 20619977 (+) True G12027
TU16224 lncRNA upstream 355111 20529047 ~ 20529437 (+) True G12023
TU16389 lncRNA downstream 105403 20991870 ~ 20992084 (+) True G12165
XR_002650607.1 lncRNA downstream 170286 21056753 ~ 21162746 (+) True LOC103030577
TU16398 lncRNA downstream 170397 21056864 ~ 21089666 (+) False LOC103030577
TU16418 lncRNA downstream 227388 21113855 ~ 21116020 (+) True G12187
TU16477 lncRNA downstream 284638 21171105 ~ 21171318 (+) True G12242
XM_022674888.1 mRNA upstream 5517 20876909 ~ 20879031 (+) True LOC111193556
XM_015600778.2 mRNA upstream 10429 20872316 ~ 20874119 (+) True LOC103032051
XM_007231435.3 mRNA upstream 40427 20746029 ~ 20844121 (+) True LOC103032372
XM_022674851.1 mRNA upstream 152839 20522878 ~ 20731709 (+) True LOC103035031
XM_022674831.1 mRNA upstream 869126 19970305 ~ 20015422 (+) False LOC103025662
XM_022674875.1 mRNA downstream 1022 20887489 ~ 20900847 (+) False tmprss5
XM_022674864.1 mRNA downstream 2536 20889003 ~ 20900847 (+) True tmprss5
XM_015600779.2 mRNA downstream 15809 20902276 ~ 20908807 (+) True pih1d2
XM_007231431.3 mRNA downstream 64876 20951343 ~ 20960236 (+) True LOC103030893
XM_022674920.1 mRNA downstream 66045 20952512 ~ 20960236 (+) False LOC103030893
TU15744 other upstream 1460484 19412844 ~ 19424064 (+) False LOC103043893
XR_002650987.1 other upstream 3744769 17139425 ~ 17139779 (+) False LOC111194200
TU14698 other upstream 4924170 15952846 ~ 15960378 (+) True G10879
TU14653 other upstream 5115305 15758762 ~ 15769243 (+) True G10838
TU16384 other downstream 76582 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other downstream 79821 20966288 ~ 20972094 (+) False LOC103033739
trnan-guu other downstream 89737 20976204 ~ 20976277 (+) True trnan-guu
TU16611 other downstream 573383 21459850 ~ 21463649 (+) True G12362
TU16873 other downstream 1443252 22329719 ~ 22341513 (+) False spa17

Expression Profile