RNA id: XM_022675044.1


Basic Information

Item Value
RNA id XM_022675044.1
length 5231
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC103031934
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21610154 ~ 21699039 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

acccgctgtatttcacaaagaacaagaacaagaggattttagcggaaggaggaccttttaaatataaaacaaagggAAACGTATCCTTTCTGATTCAAGTTTGATATGCTATGTTTAAACCCAAACTTTCCTCAGAAATTCAGAGGAACTATGAGTGATGAATCTCATTTCTGAGTGCTTTTTTATCTGCTGGTGATGTTAACAGTTCTGACGTTAAAACGTAAAGCTGCTTGTGCTGCTGCTTACTCATCCAGCAGCTGATGTTTACTGTATCAGAGCAGTGCGGATGTCAGGAGGTCAGCTCTCGGGTCGCAGTTACAGActaacttctctttttctctctctgtagatgCTTAAAAGTATTCCAGCCTGTGTTACAGTAAAGAGTCTGTGGCTCTTCCTGGAGTCTGGCTCCTAGAGTGGACAGACTTTGCAGCCCGAAGGCCCCGGTGGAGATACAGTACAGgcctaaagtttggacacaccttctctttttcaGTCATGGAGACCAAGAACATGCTCTACCTTGTGACGGAGTACGCCAAGAACGGGGAGATTTTTGattacCTGGCGAAGCACGGCCGACTGAGTGAGCCTGAAGCTCGGCGGAAGTTCTGGCAGATTCTGTCAGCGGTAGAGTACTGCCATAACCGCAACGTTGTTCACCGAGACCTGAAGGCTGagaacctgctgctggatggacacatgaacatcaaaaTTGCAGATTTCGGCTTTGCGAACTTCTTCCGCACAGGAGAGCCGTTGGCCACGTGGTGCGGCAGCCCACCGTACGCCGCCCCCGAAGTGTTCGAGGGGCAGCAGTATGAAGGACCACAGCTCGATATCTGGAGCATGGGGGTGGTCCTGTACGTGCTGGTGTGTGGCGCCTTGCCTTTCGATGGTCCCTCTCTACCCGTTCTGAGGCAGCGAGTGCTGGAGGGCCGCTTCCGAATCCCGTACTTCATGACTGAAGACTGTGAGCACCTGATCAGACGGATGCTGGTGCTGGACCCGTCTAAACGTCTGTCTGTGGCTCAGATAAAGGAGCACAAGTGGATGGTGCTGGACGTTCCTGTGCAGAGGCCTCTGCTGTACCCACAGACGGGACAGGCGGAGGGTGAGACGGGTCTGGGAGAATACAGCGAGCAGGTGCTGAGACTAATGCACAGCCTGGGCATCGACCAGCACAAGACTATAGAGTCTCTTCAGAATAAGAGCTATAACCACTTTGCTGCTATCTACTACCTGCTTGTGGAGAGACTGAAGGCGCACCGTTGCAGTTTCCCTGTGGAGCCACGTCTTGATGCCCGACAGCGAAGACCAAGCACAATTGCTGAACAGACCATGGTGAAGTCGAGCAGCGGCGCTCCTCAGGTGAGCCTCCTCTCTCAGAACGTGCGACTGCTGCGTTCCCCAGGTGTACCCCAGGCCTCCGCTGATTCCTACGCCTTCCCACAATCCCCCTGTGCTCCGGAGCACAGCCtgatggaggaggaggtgggaaCTCCCAAAGTGGACGGCTGCATGCTGGATCCTCTCCCTCCTGTGGCAGTGCGTAAATCCAGCACTTCATCTCCCAGCAATATGATGGAGATGTCGATTGACGAGGGCATAGAGACAGAGGAGCCTGACGCAGAGGAGGATCACGCCCACATGTTTAACGCCTATCAGACACGTTTTAGCCAGCGGAGACACACCCTCTCAGAGGTCACCAACCAACCAGGAGTCCTCACTAGTGCAGGGAAGCTGTTCAGTCTGGGTCACAACCCGTCCCTGGGCAGCGTGGACTCTGAATATGACATGGGATCCATGCACAGTGATCTGAGCCTGCTGGAGGACACGTCGTCTCTAAATGAGGCCGTCTTGGCAAACACGCCCATCAGCCGGGTGACTCCGCCTTTCGCACGGCCGGCGAACCCCGCCATGCAGGCGCTGAGCTCACAGAGGAGAGAAGCTCACAATCGCTCGCCTGTCAGCTTCCGCGAGGGCCGTCGAGCATCAGACACCTCCCTCACACAAGGCCTGGTGGCTTTCCGGCAGCACTTGCAGAACCTGGCTCGGACCAAAGGCATCCTGGAGCTCAACAAGGTCTACGAACAGATGGGCTCTGGGGAGAACCCTTCTTTAGGACCTCTGAGCCCCCAGACACACCCACATGACCTGCTGGACCCCTTGCTTCAGgGAGATGGAGCCCATCAGCACGGATTAGCCCTGTACTCGGGTGGACCTCAGCCGATGCTGTCCAGGAGACAGAGTCTGGAGCCTCAGTACCCCACACACAGAATCTCGAAACCTAGTATGATGGCCAGCCCCAGCAGTTGCCAGATGTTCTGTAAAGAGATTCCACGCAGCCTAGAACAGCAGCTGGCTGAACACAGGTTGCAGCAGAAGAGGCTGTATCTTCAGAAGCAGTCGCAGATGCAGGCCTATTTTAACCAGATGCACATAGTGGAGGATCCGTACAGCGGCTGCTCTACCATGAGCAGCCAGGACTCTGCAGCAGCTCCTCCTCAGGTCCAGGGCTCTATAGCCCCAGTGCTCCAGCAGCAGAGCCCCCAAGCCTCAGCATCATATCCCTCACATCCTCAAGCCTATAACCCTCTGATGGAGCCGTATCTGGGCCACTACCCACACCTGCAGCCTTCTGCCCTGCACCACAGCCTGCAGGGTCAGCTCCAGGGCCAGCAGCCGGATACCCTCAGCTACGGCTACCCACCCCAGGAGCCTAGAGCACCATGCGCCGTGGGGGACAGTATCCTGTATCAGGAGCAATACAGTCACCCGCTGGACCCTGGGCAGCCCCCTCCTCCGGGTGCAGTGGCAGGAGCTCCTCCTGCGTCCGGGTACGAAGGCCTGGCCATAGCCGACCCCTTTCTTGACGGGGAGATGATGGAGACGGTGGACTCCCAATCTGGCTTTGTGCTGGTGAATTGAGCGCAGGCATTCGAGGCAAACGACAGTATTAATTACCCTTGAGATCTGCTTTGCCGCTGGCGAATGGGAGAATAGAGGAGGAGATACAGGTACAGGGATGGACCAAGCATTTGTGCAAAGAAGAAACTTTCAGATGCGAAAGAAGAAACTTTCAGATGCGAAAAGATAACGAGGGCGTTATTTCTTTTCCGTTTTTTATTTCGTTTTCTCATCCAGTCTCCTCCCTACCTCCCTTTTCGTTCTCCGGTGCCTGCAGCAATAATGCATTTGCTGCTGGTTCTCCCCGGAGAAGGAGTCTGAAGTCTGGCAGAAGGCCACTTTTGAGGAAGCTCTGTATAAGTGGAAGTGGAAGCTCTTCTCCTGAGCGTAGCACCTGAGCCACGTCAGTCAGAGCTCTGGATGTTTTCCGTAGCAAACAGAGACGTTCCCAGTGCCCAGAGACGTGTGGCCGGGAGCCGAGACCACAAACGTGACTGGTTTTGTTTTAGAACAGGACTTTGTCTTGGCTCCCAGCAGTTTTTGAACTTGTGAACACCTTTGAACACTTGTGAACACTTTAGAACATTTCAAACAGGACGATACAGGACGTATTCAGATTGCACGCTTGTGAAGTGCAGTGTTagtaaaaatagacaaataaataaaaaaaattatttggcaATACTGAAGCAATATAATCAAGCTGGGACTGAACAAAGCCATAAACAGGACAGGACAAGGTCCAGCTCCACCAATCCCACAGTccgtgagaaaaaaaaaaaaaacacgttcgTCTGGCCTTCAACTGTAGTATTGTTACTTGCTCACTGTGTCCGTGGCATGAACTCTGAACTCTGTTCATGAACAACTGTTTCATGCAGCGAAGAAGAAGTGACGTGGAGTGAATCACAGCATTCCCACATTCACATTCTCTTCTCACACTGATTAAGCAGGGAGGAGCTGATCTGTTGTCCAGATGatgacatcatcatcatcattatcttgATGAGATCAGCCTCCCGGGGGTCAATATTGGAAATAATATGGTGGAATTTAAATTATTCTCAACACTAAATGGGTTTTTTGGCGGAATCTgcagatttttaatttttattttttttttattttaaggaaatTTCAACGATTGAAAGTTTAGTCAGTCAACACTGGAATGAATGCAGCCAACTGATCACGTTACTCTTACACTATTtcttacacactcttacatcagtaaatgattaaaaaaatagagaggAATAAAGAAGACGGGGTTCTACTTAAGCACTACTTAacaaatcttgttttttttttcttacaaaaaaaaaaaaacttgaatagGGTTTTTGATCACAATGAAATTTCtggttaataataattatcgcagatgattattattattgataattGCTTGAGAAAGTGTTGTAAAAGTAAATAAGGCTGAAATGGCTTTGCAGGACTCCtggcaaacataaaaaaaatactggagcactttttcttttctcttttctcttttctgtctgGAAGAAGCGAAAGGAATCGTAGTGAAAGTGGAATTAGCAGTCGGGCGAGTCCAGCCTGCTCTGCTAGTTCTGTCAACTTAAACCAAGAGACGAGACAAATCCTGCTCTCCCTAGTTCTGCACAcaagctgctctctctctctctctctctctctctctctctctttctctttctttctctccaagGACACGCGAGAGTCCCACGTGAGTCCCACTTGAGTCCCGCGCGAGAGTCTCACTGGTCTCAGTGATTGTCGTATGTGCTTTGTATAAATTAGGGTTTAGATATGTTTATTGGAAGTGCTTTCAAGATGCAAGGAATCATCATTTTCAGTGTGATAGTGTTCAGTgtgccttttctttctttatttcttatttttttttatttttaattaagacCTGAATAACTTGTTTAACAAATTGATTCTGTTTCTGGTTTGGTATACCTTACAGGATATAAGTAGACCCAGGTTTTACGAAAAGGTACAAAACCAAAGTCCTCTCCGAAGTTTCCCTGTACAACCCCACCGTGTGGAGTTTGGAGCTTCTCGGTTAGTTTCAGAAATAGTGCTTTTTTCAATCAGTATATGATGTTGAAAAGTATTAATAGCAATATTTGTTATGaatagttataaaaaaaaaagaatcatgatGAATGTGTGACAGTATCATAATCTCTCCTTCAGCTGCCAAACACCATTCTTTAGAAATCCAATTCTACATTTACCCTCATTGATGTGACCACACATAAGCTAACTTTGCTgttgagattaaaaaaaaaaaagtttattgaaCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16659 lncRNA downstream 11142 21581562 ~ 21599012 (-) True G12396
TU16660 lncRNA downstream 31582 21574958 ~ 21578572 (-) True G12397
TU16671 lncRNA downstream 39922 21569958 ~ 21570232 (-) True G12405
TU16665 lncRNA downstream 71874 21532480 ~ 21538280 (-) True G12400
XR_002650613.1 lncRNA downstream 293449 21314598 ~ 21316705 (-) True LOC111193576
TU17104 lncRNA upstream 3962 21694370 ~ 21694794 (-) True G12740
TU17100 lncRNA upstream 13851 21704259 ~ 21705848 (-) True G12736
TU17120 lncRNA upstream 64263 21754671 ~ 21755463 (-) True G12746
TU17123 lncRNA upstream 107561 21797969 ~ 21852060 (-) True G12749
TU17124 lncRNA upstream 107561 21797969 ~ 21852060 (-) False G12749
XM_022677703.1 mRNA downstream 79409 21518007 ~ 21530745 (-) True LOC103034230
XM_015604411.2 mRNA downstream 98948 21496598 ~ 21511206 (-) True LOC103030662
XM_007229376.3 mRNA downstream 119032 21483571 ~ 21491122 (-) True LOC103030984
XM_022675004.1 mRNA downstream 127750 21474412 ~ 21482404 (-) True sdhd
XM_022674978.1 mRNA downstream 144722 21457131 ~ 21465432 (-) True bco2
XM_022675047.1 mRNA upstream 15805 21706213 ~ 21720284 (-) False LOC107197401
XM_022675046.1 mRNA upstream 15805 21706213 ~ 21720284 (-) True LOC107197401
XM_015604418.2 mRNA upstream 57012 21747420 ~ 21752895 (-) False LOC103032573
XM_015604417.2 mRNA upstream 57012 21747420 ~ 21752894 (-) True LOC103032573
XM_022675103.1 mRNA upstream 294026 21984434 ~ 22058836 (-) True LOC103036974
trnak-cuu other downstream 635000 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 1527712 19998440 ~ 20082442 (-) True G11917
TU16077 other downstream 1807941 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 2371177 19238906 ~ 19238977 (-) True trnap-cgg
TU15837 other downstream 2498582 19108713 ~ 19111572 (-) True G11719
TU17143 other upstream 303399 21993807 ~ 21994751 (-) True G12767
XR_002650646.1 other upstream 1848849 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other upstream 1850926 23541334 ~ 23553970 (-) True LOC111193708
TU17895 other upstream 2094063 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 2213775 23904183 ~ 23908771 (-) True G13322

Expression Profile