RNA id: XR_002650645.1


Basic Information

Item Value
RNA id XR_002650645.1
length 1342
RNA type misc_RNA
GC content 0.46
exon number 7
gene id LOC111193708
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23539257 ~ 23553970 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTTGACCGGgtagcacaattcgacagaacaccgggcATGCAGGAAGGTGATTGGCTGTCGCAGCACCTCGCAACCTGAGTAAACTCAGCTTTAACGAGCTTTAATAACTAACAACATGCCGCCAAAGAAACGCAAAGGAAAGGCTAAAAAGCCCAAAAGCAGCAAAACTGAGCGAGTCGCAGGAGATGAAGTTGCTCAGAGCTACAGGAGAAGTTTACTGGAAGTGGCTGTTCTAAAAGACCGCCTCGCACTGAAGACAGACGTGGCTCAGCAGGCGATATCAGCAAGAGATGATCTGCAGTATCAGATAAGAGACCTGAAGCAGACGCTTTCTCAAGAGAAACTAGGCATGAAGGATATCACTACAGATCTAAACCGTCAGTATAAAACCTTACAAACAAACCTGGAAGCCAAAGTGGAATATTTAGAAACAAGGGTGTCCGAGCTTCAGCAACAACTTGATCAGTGTCAGGgggatttaaaaacagaaagagaacaaCGAGAACAAACAGAAGAGGAGAAAGATGCCCAGATTACTGACCTGCAGATTAAACTGGACAACATGGAAACGGAATATGAAAAAATCCTACATGGAGTTTATTCCAGACCATGACTGTGCAGGGGCTGATAGAAGATGCcattgccactatgatcaggagatccgAATCCCGGTCATCCAGCTTGCCACCAGCTGCCGGAGTTCCGAGAGAGCACatctggccttgctctctctgggacttTCTCTCCGGTGGATATTCAGACTGTACTGGATTCCGGCGCTCCAGGAGAGCAGAATCAGGTTTCTCTGTTTTATCCACTGCTGTTTAATGTTGTTAATGATGGCTCGGCTAACACAGGAACCAGAGACTATATCATTTCTCTTCTAATAGATCTGACAAttgatttttgtattaattttattttactgtgagGCACAGAATCATGAAACTGACCAGTTTCAATAACTCTGACCTCCACGTCCTTTACAACACCAGCGTTCAGTTTTCCCTCTGCGTCCTGTTTGACTGTTTTCTGGAGACCGTCTCTGCCGTGCCGCTCCTGTCTCTTGGTCGTCTGGCTTGTGGGGAATCGATGTTTCCCCATCTGAGGGTTATTGATCAGAGCAGGACTGAAGAGAAAAGACACAGaacaaagcaaacaaagaacTTTTTTCAGTGATGGACATGATGACAAGCTATTTTTTGTCTTGTAGACTGAATCAGTGTTGCTAACTTaagctgcatttacactgctccgtcgCGTCAGCACACAGGATCGCACTGCCCCCCTCCAACTGGTTGCATGTGGGTGTGACAAAGGCGTTCCCTGCGTTGTCCAATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17835 lncRNA downstream 4516 23528299 ~ 23536818 (-) True LOC103031983
XR_002650649.1 lncRNA downstream 7475 23528353 ~ 23533859 (-) False LOC103031983
TU17817 lncRNA downstream 13268 23526236 ~ 23528066 (-) True G13268
TU17389 lncRNA downstream 449493 23091598 ~ 23091841 (-) True G12951
TU17383 lncRNA downstream 453671 22988534 ~ 23087663 (-) True G12946
TU17842 lncRNA upstream 18071 23572041 ~ 23620191 (-) True G13291
TU17846 lncRNA upstream 46855 23600825 ~ 23602514 (-) True G13293
TU17850 lncRNA upstream 56275 23610245 ~ 23710537 (-) True G13296
TU17860 lncRNA upstream 60160 23614130 ~ 23642892 (-) True G13298
TU17871 lncRNA upstream 120240 23674210 ~ 23724463 (-) True G13303
XM_022677923.1 mRNA downstream 1258232 22269223 ~ 22283102 (-) True LOC111194286
XM_022677922.1 mRNA downstream 1272106 22258919 ~ 22269228 (-) True LOC111194282
XM_022675110.1 mRNA downstream 1293875 22205062 ~ 22247459 (-) False LOC103037608
XM_022675106.1 mRNA downstream 1296034 22205062 ~ 22245300 (-) True LOC103037608
XM_022675114.1 mRNA downstream 1349797 22179416 ~ 22191537 (-) True LOC103032877
XM_022675241.1 mRNA upstream 96447 23650417 ~ 23724768 (-) True LOC103035063
XM_022675250.1 mRNA upstream 213057 23767027 ~ 23775316 (-) True c1qtnf5
XM_022675334.1 mRNA upstream 236761 23790731 ~ 23853298 (-) True LOC103035686
XM_022675259.1 mRNA upstream 305783 23859753 ~ 23895075 (-) True ube4a
XM_022675312.1 mRNA upstream 355441 23909411 ~ 23927376 (-) True LOC103036322
TU17143 other downstream 1546583 21993807 ~ 21994751 (-) True G12767
trnak-cuu other downstream 2566180 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 3458892 19998440 ~ 20082442 (-) True G11917
TU16077 other downstream 3739121 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 4302357 19238906 ~ 19238977 (-) True trnap-cgg
TU17895 other upstream 230501 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 350213 23904183 ~ 23908771 (-) True G13322
TU18307 other upstream 1919764 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 2170943 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 2453272 26007242 ~ 26016396 (-) False nars2

Expression Profile