RNA id: XM_022675241.1


Basic Information

Item Value
RNA id XM_022675241.1
length 2893
RNA type mRNA
GC content 0.48
exon number 19
gene id LOC103035063
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 23650417 ~ 23724768 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cacacacaccccaaacacacacacacacacaccgtgctaatgctgctctccTCCCGCAGCACGTAGCTCTCCGGTTCTCTCCCGCAGCGCGCAGTCGGTTCTCCGGACTCTCCGCGGACACGAGCAGCGGGACTCAGCATGAAGCAGCCCGGtctcaccctcaccctcaccgCGCTGCACCTCCTCTACTGGAGAGCATGGGCAGCTCTGGAGGTCAGTATGGAGGACAGGAGGGAGGTGTTGTTGGGATCAGGAGCAGAGATTCCCTGCGTGTTCAGCCTGGATCAACCAGCAGCAGATCTGAAGATTGAGTGGTTTGTGAGTTTGTCTGGAGGAAATAAACAGCGAATCCACTACAAAACCGGCAGCGAGGAGCCACAAGTGGAGGCCACAAGATACACAGACCGAATCAGTGTCTCCTACAATTCCAGCACTAACGGGAACAGTGTTCTGACCATCAGCAGCACACAGCTCAGCGACGAGCAGGAGTATTTCTGCAGAGTGAGCGCGGACTCAGCCAGCGACGAGAAACACACTCAACTCCTCGTTTTCCagCCTCCGTCTCCTCCAACTATAGAAGCTGAGAAACATGTTTCTGCAGGCTCAGATAAAATGGAAAAGATCGCAACCTGCATAGCTGAAAATGCGTACCCCGCTCCGAAGGTACTGTGGCACAAAGACGGCATCCCCCTGCAGCCCTCAGATGATGATGTGTACGTGATGAACAGCGTGACTGTGCAGCCCAGCTTCCTGCAGACGTTACAGAGTACACTGCACCTCAAAATGgtgaaaaaagaagataaagacGCAGAATTCTACTGTGAGATCTCCTACTTTACTGTTGGAGGTGAAAGTATGATGGAGTCCGACCACGTCAAGATCACAGTCCACTATTCAGCAACAGAACTTAAGATGTACCAGGTTTCCCCCGAAAGACTTGTGAAAGAAGGCGACAGAGTGGAGATCAGATGTGAGGGAGATGGAAATCTTTCACCAGCAATCACCTTTTCACGTAACGGAGATGAAATAGAatcacaaaatgaaaatttaatggTTCTGGAAAACGTTAATCGAGCAAACAGTGGTGAATACCTTTGCTCATATACAGAGGACTGGGTCAATTACCTACATTCAAACTTTACCCTGAAAGTACACTTTATGGATGATGTTGTAATTACTCCAGAACAGCCAGCAGAACTGGATGAAGGACAGAATCTCAGTCTGTCCTGCAACGCTCTCTGCTCTCTGCCCACTCGTACAGTGTGGtacaagGACAATAAACAGCTGGATGAAGGGAATATTCTGACTCTAAGCAGTGTTTCCAGTAAATCGTCCGGGACGTACACCTGCAAAGTTCAAGCCCCTGATTTACCTGAGCTGTCGGGAGAAAGCTCTGTGGACGTCACTGTGAGAGGAAAACCTGAGATTACAGACAAGATAGAAATAATCAGCCTGgagaataaaaatatgtttaatctgAGCTGCAGTACGACCGGACACCCAACTCCTAACATCACCTGGAGCCTCTCTGATGAGCAAaCTCGTGTGGATGTGTGGAATATGGAGACAGACGACAGCGTTATCAGTATTATAACCATCAGCACCACGTCTACCGTCAACGCCTCCTGCATAGCCACCAATGAGATGGGCACAGTCCTGACATCTATTAGTGTTGAACCTGATAAATTTGAAGATTCAACTACAGTAACAACAGGCACTACTTCCAGCAGTACCACAGGACCGCCCACCTCTCACAATCAGACAGAACCTCCAGCAGAAACAGACGAGTCTCCCAAAAAGAAAGAGCACGTCCGAAAAGAGAGCAGTGGATTCATCATCGCCATCCTCATCATCCTCGTTTTACTGCTGGCCATCGGGGGCAGCGTGTTCTACTTCCTCTACAAGAAGGGCAAGATCCCATGTGGGCGCTCAGGGAAACAGGATCtgaCGAAGGAAAGCGCCAGTAAGGATGTTTTGGTGGAGATGAAGAGCGGGAAGTCTGAGGAGGCGGTGCTTCTGCAGGGAGTCAACGGAGATAAAAAGATTCCCAATGACCAGTGAAGAGTGAAGGCTGTACAGATGctcagagaggaggaggaggaggaggagtcacTAACAGCCTTCAGCTACAccaaacactctctctctcagggtgagACCCTCCAACCAGAGGCCTCCAGCCTTCTCCTCACAGGAATTCCCCCATTTAacccctccacctccacctccacctccacctctgGGCCGGGACCCGGTGCACTTCAGAGACTCCGCCTCCGCCCTGCTGCACTGGCCGGTCTCCTCCACCCTGTAAAGCAGTCCGTTTCAGTATTTTTAACCCTGCCAGGATGCGCTGTCCTCCAACAGCCTGTGctgtttatatattgtatatatgatCTAGTGtacatatttagatatttaaaatgcTTCCCACAGAGAAACCCTGAGGGACAATTCTCCACCGCCGACTGGAGACTCTCTCTGTTGATCTGGAGGAGCGACCTTTGTTTGACCTCTGTTTGAAGACTGTCCTGTACGGTGGCCCAGAAAAGACACATCATAACAAcatttacaaaacaaacaaaaagatgacaaCGCAActaaattaaccctttcagacctaatATTATTTCCAGTACTaaaaaatgtcatgttttttttctgtctgcaatgcatttaaaatcagtaaattaataaaaaaaggtgaGGGTGAGAGAATATGcaataaagaagaaaatacatgatgttcGTTCTAATGGATGCAGAAAGAGTTAAGAAAACGCAACTACGTTAAAAAAGGCAGCaaacaacaacatttaaaaagcaaacaaaaagatgacaaCGCAACTACAAATTACGAAAATCCAACTAAATTAAGAAAATCCAACTAAAT

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17860 lncRNA downstream 7525 23614130 ~ 23642892 (-) True G13298
TU17842 lncRNA downstream 30226 23572041 ~ 23620191 (-) True G13291
TU17846 lncRNA downstream 47903 23600825 ~ 23602514 (-) True G13293
TU17835 lncRNA downstream 113599 23528299 ~ 23536818 (-) True LOC103031983
XR_002650649.1 lncRNA downstream 116558 23528353 ~ 23533859 (-) False LOC103031983
TU17876 lncRNA upstream 25702 23750470 ~ 23752519 (-) True G13307
TU17881 lncRNA upstream 28783 23753551 ~ 23754490 (-) True G13311
TU17890 lncRNA upstream 46880 23771648 ~ 23771966 (-) True G13317
TU17905 lncRNA upstream 172151 23896919 ~ 23903053 (-) True G13325
TU17907 lncRNA upstream 190945 23915713 ~ 23916288 (-) True G13327
XM_022675222.1 mRNA downstream 96452 23547242 ~ 23553965 (-) False LOC111193708
XM_022677923.1 mRNA downstream 1367315 22269223 ~ 22283102 (-) True LOC111194286
XM_022677922.1 mRNA downstream 1381189 22258919 ~ 22269228 (-) True LOC111194282
XM_022675110.1 mRNA downstream 1402958 22205062 ~ 22247459 (-) False LOC103037608
XM_022675106.1 mRNA downstream 1405117 22205062 ~ 22245300 (-) True LOC103037608
XM_022675250.1 mRNA upstream 42259 23767027 ~ 23775316 (-) True c1qtnf5
XM_022675334.1 mRNA upstream 65963 23790731 ~ 23853298 (-) True LOC103035686
XM_022675259.1 mRNA upstream 134985 23859753 ~ 23895075 (-) True ube4a
XM_022675312.1 mRNA upstream 184643 23909411 ~ 23927376 (-) True LOC103036322
XM_022675270.1 mRNA upstream 204047 23928815 ~ 23947378 (-) True nlrx1
XR_002650646.1 other downstream 96447 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 96447 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 1655666 21993807 ~ 21994751 (-) True G12767
trnak-cuu other downstream 2675263 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 3567975 19998440 ~ 20082442 (-) True G11917
TU17895 other upstream 59703 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 179415 23904183 ~ 23908771 (-) True G13322
TU18307 other upstream 1748966 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 2000145 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 2282474 26007242 ~ 26016396 (-) False nars2

Expression Profile