RNA id: XM_022675374.1


Basic Information

Item Value
RNA id XM_022675374.1
length 4897
RNA type mRNA
GC content 0.42
exon number 15
gene id LOC103033355
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 25006992 ~ 25038802 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACATGCATCAACAGGCCAGTAGGGGGCAGTGCACCAGGTGACGTCACCCCATCAGTCTGAGTGAGTGTCTTGCTTGTAAACAGAGTGGCTCTCAGTCTCAGGCAGGTTAAAGAGCAGTGCAGCTCCAGAGACTGTAGGGAACAAGCAGATGCTCAGGATTGCCTGGAAGTGGCCAGCCACACCTGGACTTATCCCACTGCATCTCACTCAGAAGGAATGGCATGTCTCATGGCAGCCTTCTCAGTCAACAACACTACTGTCACCAACTCCATCATAATGAACACCAACGGACCTCCTGACCTCATGCTGGACCCAAGGACAGTTTGTGTTTCCATCGACGATGTGGTGACCAATCACAATGGCAGCCAGCAGACTCCTCTGTTACACGGACACTTGAAAAAAGTGGAGAACAATCTGACTGAAGCACAGCGCTTCTCCTACCTGCCCCGCAGACCAGCGGTCAATATCGAATTTAGAGACCTCTCATACTCAGTTCCTGAAGGACCATGGTGGAGGAAGAAAGGTTACAAGACCCTGCTGAAAGGCATCTCTGGGAATTTTACCAGTGGCGGACTGGTGGCCATCATGGGGCCTTCAGGAGCTGGGAAGTCTACTCTCATGAATATCTTGGCAGGATATAGGGAGACTGGAATGAAAGGAGAGATCTTAATTAACGGACAGCCCCGTGATCTGCGCTCCTTCAGGAAAGTCTCATGTTATATTATGCAAGACGACATGCTTCTGCCTCACCTCACAGTACAGGAGGCCATGATGGTGTCGGCTAATCTCAAACTCCAGGAAAAGGAGGAGGGCAGGAGGGAGATGGTCAGGGAGATCTTGACTGCGCTCGGCTTGTTGGAGTGCGCTAAAACACGAACCTCCAACATCTCCGGCGGCCAGAGGAAACGCCTGGCCATCGCCTTGGAACTTGTCAACAACCCACCCGTCATGTTTTTTGATGAACCCACAAGTGGCCTGGACAGCTCCTCCTGTTTTCAGGTGGTGTCACTGATGAAAGCTCTCGCACAAGGTGGCCGGACAGTCATCTGCACCATCCACCAACCCAGCGCCAAAGTCTTTGAGCTCTTTGACAAActatATGTCCTGAGTCAAGGTCAGTGCATCTACCGAGGAAAAGTATCAAACCTCATCCCTTACCTTAGGGAACATGGACTCAACTGCCCTACGTACCACAACCCTGCTGACTTCATAATGGAAGTGGCTTCAGGAGAATATGGTGACCACATGGCTCGGCTGGTGAAGGCGGTTCAGGAAATGAAATGTGAGAAAGATTACAAAAGTGAGATGAACGGAGATGGTGCCCTGAACCCCTTTCTGTGGCATAGGCCTTCTGAAGAGGACTCCTCTTCCACTGAGGGCTGCCACAGCTTCTCTGCCAGCTGCCTGACGCAGTTCTGTATCCTCTTCAAGAGAACTTTCCTCAGCATCATGAGAGATTCGGTGTTGACCCACCTGCGTATCACCTCTCACATTGGGATCGGGATTCTGATAGGGCTTCTCTACCTGGGCATCGGCAACGAGGCCAAGAAAGTCCTCAGCAACTCTGGTTTCCTTTTCTTCTCTATGCTCTTCCTCATGTTCGCTGCTCTAATGCCTACTGTGCTTACCTTTCCTCTTGAAATGGGAGTGTTTTTGAGAGAACACTTGAATTACTGGTACAGTCTGAAGGCGTACTATCTGGCAAAGACCATGGCTGATGTTCCATTCCAGATTGTATTCCCGGTGGCATACTGCAGCATAGTTTACTGGATGACCTCTCAACCATCAGATGCTGTCCGCTTCATTCTCTTCCTGGCCCTGGGTACTCTCACCTCTCTGGTGGCACAGTCTCTGGGGCTTTTGATTGGGGCAGCATCTACATCTCTGcagGTGGCCACTTTTGTAGGTCCAGTAACTGCAATTCCAGTGCTGCTTTTTTCAGgcttttttgtcagttttgaCACCATACCAAAATACCTTCAGTGGATATCATACATTTCCTACGTTAGGTACGGCTTTGAAGGAGTTATTTTGTCTATCTACGGGCTGGACCGTGAGGACCTACACTGCGACAAAGATGAAACATGCCATTTCCAGAAATCAGAAGCTatcctgaaagagctggacgtTGAAAACGCTAAGCTGTACATGGACTTCATTGTGCTGGGCATCTTCTTTGTTTCTCTGCGGCTGATTGCCTACTTCGTCCTCCGCTACAAAATCAGTGCTGAGCGATAGAGCAGTCGAGGAGATGGTGGAGGAAGCCCTGGCAAGACTCTGAAAATGCCCTGAAAGGGATGAGCTTAATGGACCAAAGTCGGCTATACTTCTATCCGTACAGGTTTTATGTTATGGAGGTCTTTCCAGGACAGCAATGCAGTAGACAGAAGCATATACTGAAAATGACATTGCGGAGACGCGCTGATGCACTAAAAACAAGGGAGTAGATGTGGACGCTGCATTTAGTCACACATCTGAATAGACATCATTGGTTGGCTGTGTTAACAGGGACAATCCTGAATTTTACAGAAAATAGTAACATTGAACTCTTTTGTGCCAGTTTGAACATTTATCAGAGAGCTGGACTCGTGTTTACAAtgaaatgtagattttttttttaagtgttatgTTCTGTTGTATAAGACAAATGGTGGGAGGGAGCTGTTACCTTATAGCCATTCTCTCTTCcatgtttgtctgtctgtgtatggAATGGCTTTTCTCCTTGTCTGTAGGATCCTTTTAACTAGGATAAGTCAGAGAGGAGCTTCAAACTTTATACTTCAGGGTTTTACTGATTTAAGAGCTGGTCTCCAAAAGTGCGCCTAATAGAGTAGGATGCTTTACCTATTTTAttgcatagaaaaaaaaatgctctcaTTACTGACCATTATATTAATGCTTTCTATACTATCTATTCCAATTCAACTTtgtgtaatgtattataatcccTAGCTCTATACTGATATGCCCAGTGTCATGGGACAAGGGACTAAAATGGTGTCCACTGACTTTTGTCATGCCCCGTGAAAGATaaaaaatgctgcactgacctgtgtgtgGGGTCTCTTACACTGAATATGAATGTGAGTTCTGCTGGTCACAATCACATATCACATTGTGGATTCACACaaggaatataaaaaaattgaaaacaacCTCAGAAATGGAAAGTCCCATTCAAGTTAATCAAGCATTCACTGTCAGACCTCACTCAAACTCTGATAGTTCATGTCATTTTGCCATGAGcacgctggccagtgttcagcctcactcacaagagtGTCCATTCCCTTAGGTAATAATTTGTAAACAATTTAtataccatgacttttggcatgtaagtgtataatgtgttttaatgatgaaaatgtagtgacctgcaaattTACAGGGTATTTTTAATCAGGTGACTGACGGAAAAAAAGCACAATTTCAAAATGTTCAccagcactttttaaaataattatatatatataatatatatatatatatataatatatatatatatatataatatatatatatataatatatatatatattaatctgGCTATAGTGTAATAATGGCATTTGTACAGGTTCAGTTTCTGGGaccaaaaatacagttttaaaagctTCCATGGGTATTTAATATATATCTACAACTCAGAATCTACAGATCTGGATATTTAAAGCAGCCTGGTTCCATTCTGTTTTTAATGAGGTTTCATCCTCGTAAAACACTGAGCACAATTTACTTGTTAATGAAAAGGTGAAGCGATCTGTATTCAGATGTTGTTTGTAAACATCTGTATGATTTATAGTGCCATGTTCTCCTGACTGATTTTAATACAGGCAGCTTTATCACAAAACATGGCGTTTGTCCACAGAAAGCCAAATGTTTCATAAACAGTAGTAGTTTAGGCATCAAAAGCAAGGCAATCACAAGCACAACAACAGACACTTACCTTCTTGTAATACATTGTGTacgtttttactttaaaactgctTCAAAATAATTGTGATGCATCAATGCACTGATGAGAAAGGAGAATATCAGCTTTATTGTTGTTACTCCTGGCTactactgcactatgtaactctggtaAAGTGCATACTGCTGTATAACCTAAGTCATCTTTGTTTAAAATtgctgtaatattactctaaatCTTTATCCCAAAAACAGTTCTTACTAAACTTAATGTTTAGTACCTCTGGAAactctcattttcttttccaCACGTGGTTTGTAAGTTTTCAGTTGTTTGTACTTATTTTACTGGTGTAAGCCTTTGATTGCCTAAACTATAACTTCATGATCCATAATACCACAAAGCGAAAACAGAGGATATCATACTTACCAAGAAAAAGCTGCAGAGTTTTAAGAAATCAATTCAAATGTGAAAATGTTATCTCTCAGTCAGTTTTCTTTTGAATATTGTGTATCAATAGTTAGTTCCTTTTACAGCCCAGGTACAAGAACATTACCTATGTGAATGCTAAGCTTTAACTTAAGTATTACAGTGGTGTTACATATGCATACAAGGCATCAACTATTTGCTGTGGaccttaatataaaatattatattgcaaACTTcgattttaaacacaggtagaTACAAGTACTTCTGTCAAGTCTGTCTGTGATGCTCTGCATTCTctgttctgcttttttttcctttatgtgCTGGctatatatttcttatattcaTTAGCGTTTCTTTCTTTGAAACTTGCTCACATCATCCAAAGTATGAAAATGTCAGTTTTCATCCTTAAAGGTTGCATTTATTAGTCATGTCATTTTTCAGGGCACTATTGCTTCTTGTTCAATCAGTTGTGTTATTTCCTGTAAAAGTGATGTAATGACTTGGTAGAACAGGAATAAAGTTTTGTTATTTTCAAAAAACA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05679 ABCG1; ATP-binding cassette, subfamily G (WHITE), member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18063 lncRNA downstream 13469 24991921 ~ 24993523 (-) True G13444
TU18035 lncRNA downstream 38161 24968292 ~ 24968831 (-) True G13427
TU18027 lncRNA downstream 197921 24775808 ~ 24809071 (-) True G13419
TU17994 lncRNA downstream 294007 24707486 ~ 24712985 (-) True G13393
TU17991 lncRNA downstream 341954 24664593 ~ 24665038 (-) True G13390
TU18099 lncRNA upstream 4438 25043240 ~ 25043516 (-) True G13476
TU18100 lncRNA upstream 6304 25045106 ~ 25045309 (-) True G13477
TU18093 lncRNA upstream 12172 25050974 ~ 25055701 (-) True spcs2
TU18104 lncRNA upstream 22908 25061710 ~ 25062064 (-) True G13481
TU18108 lncRNA upstream 37384 25076186 ~ 25083642 (-) True G13483
XM_007236781.3 mRNA downstream 3081 24987066 ~ 25003911 (-) True pgm2l1
XM_007258876.3 mRNA downstream 307532 24690075 ~ 24699460 (-) True ppm1d
XM_022677939.1 mRNA downstream 319814 24567591 ~ 24687178 (-) True brip1
XM_022675273.1 mRNA downstream 1059614 23932139 ~ 23947378 (-) False nlrx1
XM_015602314.2 mRNA upstream 12158 25050960 ~ 25056101 (-) False spcs2
XM_007236779.3 mRNA upstream 12158 25050960 ~ 25055975 (-) False spcs2
XM_007236780.3 mRNA upstream 23885 25062687 ~ 25072518 (-) True rnf169
XM_022675398.1 mRNA upstream 180407 25219209 ~ 25225815 (-) True LOC111193727
XM_022675494.1 mRNA upstream 485030 25523832 ~ 25524603 (-) True LOC111193738
TU17900 other downstream 1098221 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 1203174 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 1453022 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 1453022 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 3012241 21993807 ~ 21994751 (-) True G12767
TU18307 other upstream 434932 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 686111 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 968440 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 1639479 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 1791219 26830021 ~ 26833598 (-) False fam109a

Expression Profile