RNA id: XM_022675652.1


Basic Information

Item Value
RNA id XM_022675652.1
length 8744
RNA type mRNA
GC content 0.56
exon number 31
gene id tenm4
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26048861 ~ 26299928 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ACTACAAGTGGaacaaatgcattttttcatttttgattaaTTCGGCAGGAAAAATAtaaacctggcaaccctggtggctGATTAGAACACCTTCTCAAACCCACTGCTTGAGTTTCTACACAACATCCAACTCAaATCAGAGGGACTGAACTGGATCCTTCCTCATTGATGTGGAGAACTGAGACGTGCTGAAGATGGAAGTGAAGGAACGCAGACCGTATCGCTCTCTGACGGCGCGGCGGGACACAGAGCGCCGCTACACCAGCTCATCCGCCGACAGCGAGGACGGCAAACTCAACCCCAAATCCTACAGCTCCAGCGAGACCCTCAAGGCCTTCGACCAGGACCCCCGCATGACCTACGGTGGCCGTGTAAAAGAAGTGGTGCATCATGAAGTGGACGAGTTCGGCAGGCAAGGAACTGATTTCTCTCTGCGTGATCTGGCCTTTGGAGAGCCTGTGCCTCCTCATGTAGCGGCGTACCGGCCGGACATGGGGATGCCCCACCGTGACTACTCGGTCAGCGTGGGCTCGGACGCCGACACGGAGACGGACGGAATAGTGTCTCCGGAACACGCGGTGCGGCTCTGGGGCCGCGGCAACACCAAGTCCGGCCGCAGCTCCTGCTTATCCAGCAGAGCCAACTCCAACCTGACCCTGACGGACACCGAGCACGAGAACACGGAGAACGGTCCTCCTCTACATTGCTCATCTGCCTCCTCCTCCCCTGTCGAGTCCCCATACCCTCCCCCTTCCCATGCAGCCAATGAGAGCCAGGGAAGGTTGCTAGGTAACAGTGGGGCTCAGCCTGGCCAGGAGTCTGAGTCAGAAGATGAGTTTGGCCCCAGTTCATTCTTAGTTAAAACTGGCTCAGGGAACGTCTATGCTCCTGCCACTGCAACTGCTGACGACGGTTCCTTCCAGAACCATTCGCGGCTGCGGACCCCTCCTCTCCCGCTGTCCCATTCGCACTCCCCCAGTCAACACCATGCGGCCTCCATGGGCTCTCTAAGTCGGAGTAACTATACCCCGCGCAGCAACGCCAGTCCTGCACCCACTGACAGCACGGCGGCTCCTGAGGGGCCCTCCAGTGCCCAGGACTCGGCTAGCGCTCAAGACAACTGGCTCCTCAACAGCAATATCCCTCTGGAGACCAGGAGCCAGAATACTCTAATGTTTATTAGAGAGGAGCAGGACTCGTGCAGAGAAGGTCAAGGGTCATACAATACAAGAAACATAGCAAAGCAGACATTCCTAGAGACTTTACAGGACAACCTTATAGAGATGGACATACTGGCCGCAGCCCGCCGCGACGATGCTTACACTGACGGACACTTTCTCTTCAAGCCCGGCGGGACCTCGCCGCTGTACTGCACCACGTCGCCCGGCTACCCCCTGACCTCCAGCACGGTGTACTCGCCCCCGCCGCGGCCGCTGCCCCGCACCACCTTCTCCCGGCCCGCCTTCAGCCTGAAGAAGCCCTACAAGCACTGCAACTGGAAATGCGCCGCCCTCAGTGCCATCCTTATCTCCGTCACCCTGGTGTTCCTGCTGGCCTACTTTATCGCCATGCACTTGTTTGGGCTGAACTGGCACTTGCAGCCCATACAGAGGCAGATGTACCAGCTGGCCGAGGACAACACCAGTGGCCTGTCCTTACCCACAGACCTGGGCCTGCCCCCGCTGGGCAACACTGGGCTGGAGCTACCTGACCGGAGGGGCAAAGATGACGGTAAACTGGACAGCTTTTTCCCAGACGACAGCTTCATCGACATGGGCGAGATAGATGTGGGTCGCAAGGTCTCTCAGCAGATACCGCCCGGAATCTTCTGGAGGTCGCAGGTCTTCATCGACCACCCCATGTACCTCAAGTTCAATGTGTCCCTTAGTAAAGATGCCTTGGTGGGGATTTACGGAAGAAGAGGACttcctccctcacacacacagtTTGACTTTGTGGAGCTGCTGGATGGCCGCCGGCTCCTGGCACAGGGGGTTCAAAGCCTGGAAGGACCACCGGCTCTGACCCAGCCACGAAGCCTCATGCCCCTCAGCAGCCATGACACAGGCTTTATTCAGTACATGGACTCGGGCATCTGGCACCTGGCTGTGTACAATGATGGCAAGGAGACGGAGCAGGTAGCCTTCCTGACCACTGCTATTGactCGATTGATGACTGTCCCAGTAACTGCTTTGGTAATGGAGACTGCATAGCTGGAACCTGCCACTGTTTCCTGGGCTTCAGAGGACCAGACTGTGGCAGAGCTTCCTGTCCGGTGCTGTGCAGTGGGAACGGGCAGTATCTGAAAGGCCGCTGCATGTGCCACAGCGGTTGGAAAGGGTCAGAATGTGATGTTCCCACCAACCAGTGCATCGACGTGACCTGCAGTGGGCACGGGACATGCATAGTGGGGACCTGCATCTGCAATCCGGGCTATAAGGGAGAAAACTGTGAAGAAGtgGACTGCCTGGACCCCACTTGCTCAGGACGAGGTGTTTGTGTTCGCGGGGAGTGTCATTGTTTCGTAGGCTGGGGGGGTCCGGGGTGTGAGAGCCCGCGAGCCTCCTGCATGGACCAGTGCTCAGGACACGGTGCCTTCCTGGCCGACACAGGAACCTGCAGCTGCGACCCGAACTGGACTGGTCACGACTGCTCCACAGAGCTTTGTGCGGCGGACTGTGGCGGTCACGGCGTCTGCGTGGCGGGCGGCTGCCGCTGTGAGGAGGGCTGGACGGGCGCCGGGTGTGACCAGAGGGCGTGTCACTCGCGCTGCAGCGAACACGGCACCTGCAAGGACGGCAAGTGTGAATGCAGCCCGGGCTGGAACGGAGAACACTGCACCATCGAGGGTTGCCCGGGTCTGTGTAATGGCAATGGCAGGTGCACGCTGGGTAATAACGGCTGGTACTGCGTGTGCCAGCTGGGCTGGAGAGGAACAGGCTGTGACACCTCCATGGAGACGGCATGCAGTGACGCCAAGGACAACGACGGAGATGGTCTGCTGGACTGTATGGACCCGGACTGCTGCCTGCAGGCCTCGTGCCACACTACCTCACTGTGTGTGGGCTCACCTGACCCTCTTGATATCATCCAGGAGACGCAGATCTCCTCCAGTCCGAGCAACCTGCAGACCTTCTACCAGCGCGTTCGCTTCCTGGTGGGCCGGGACAGCACCCATGTCATCCCCGGGGTCAACCCCTTTGAGGGCAGtCATGCCTGTGTCATTCGAGGACAAGTTGTGACCTCTGATGGAACGCCGCTGGTTGGAGTGAACATCAGCTTCATCAACAACCCGGCATACGGATACACCATCACCAGACAGGATGGCAGTTTTGACCTGGTCTCTAACGGGGGTGTGGCCATTGCCCTGCGCTTTGAGCGTGCTCCCTTCATCACGCAGGAGCACACGCTGTGGCTGCCGTGGTCGCGCTTCTTCGTTATGGACACCATCGTCATGCGGCACGAGGTCAACGACATCCCCAGCTGTGACCTCAGCAGCTTCACCAGGCCCAGCCCACTCGTTCTGCCCGCCCCACTGACCGCCTTCGCCGGGAACTGCCCCGAGAGGGGCGGCATCGTCCCAGAGATCCAGGCCCTACAAGAGGAAGTGCGGATCCCAGGCACGGACGTGCGCCTCGGGTATCTGAGCAGCCGTACTGCTGGATACAAGTCCTTACTGAGAGTCACCCTCACCCACGCAATCATCCCCTTCAACCTGATGAAGGTTCACCTGATGGTAGCGGTGGAGGGACGTCTGTTCAGAAAGTGGTTCTCAGCTGCTCCCAACCTTTCCTACGACTTCGTCTGGGACAAGACCGACGTCTACAGCCAGAAGGTGCACGGCCTGTCTGAGGCTTTCGtgtCTGTGGGCTTTGAATATGAGTCGTGTCCTGATTTGATCCTGTGGGAGAAGAGGACTGCCATTCTCCAGGGCTACGAGACCACTGCCTCCAACCTGGGGGGCTGGAGCATAGACCAGCACCACGCACTCAATATTCAGAGCGGCATCCTTCACAAGGGCAACGGCGAGAACGTCTTCATTTCCCAGCAGCCCCCAGTCATCGGGAGTATCATGGGTAACGGGCGGCGGCGCAGTATCTCCTGTCCGAGCTGTAATGGCCTGGCTGATGGAAATAAGCTTTTAGCTCCAGTAGCTCTGGCCTGTGGCTCTGACGGCAGCTTATTTGTGGGGGACTTCAACTACATCCGGCGAATCTTCACCACTGGGAATGTCACCAGCGTTCTGGAGCTCAGTAACAGCCCTGCCCACAAGTACTACTTGGCCACCAGTCCTGTGTCGGGTGCTCTGTATCTGTCAGACACCAGCAGCAGGAAAGTCTTTAAGGTGAAGTCTCTGAACACAGTGAAGGATGTGGCTAAGAACCTGGAGCTAGTGGCCGGGACCGGAGACCAGTGCCTACCGTATGATGAGACGCGCTGCGGGGATGGAGGAAAGGCTGTGGAGGCGACTCTCACCAATCCCAGAGGCATCACAGTGGACAAGTACGGCATGATCTTCTTCGTCGATGGCACCATGATCCGCCGCATTGACCAGAACGGAATTATCTCCACGCTGCTAGGTTTCAACGACCTGACCTCGGCACGACCCCTGAGCTGCGACTCGGTGATGGACATCTCGCAGGTACGGCTGGAATGGCCCACTGACCTAGCTGTGAGCCCAATGGACAATTCCCTATATGTGCTGGACAACAATGTGGTGCTACAGATATCAGAGAACCATCAAGTGCGGATTGTGGCCGGCAGACCAATGCACTGCCAGGTCCCTGGCTTGGATCATTTTCTGGTCAGCAAAGTTGCCATTCATGCCACGCTGGAATCTGCCACTGCCTTGGCTGCATCCCACAACGGCATCCTCTACATCGCCGAATCCGATGACAAGAAGATCAATCGTGTGCGACAGGTTTCAACCAACGGTGAAATCTCACTGGTCGCTGGTGCTCCGAGCGGCTGCGACTGCAAAAACGATGCTAACTGCGACTGCTACTCAGGCGATGATGGCTACGCCAAAGACGCCAAACTCAACTCACCCTCTTCACTGGCAGTCTCGCCCAATGGGGAGCTCTTCATTGCTGATCTGGGCAACATCAGGATCCGCTACGTACGCCGAAACAAGCCTTACCTCAACCCGCTCAACATGTACGAGGTGTCTTCACCCATCGATGATGAACTCTACCTGTTTGATGCCAATGGAAGCCACATCTACACCCAGAGCCTGACCACTGGGGACTACCTGTACAACCTGACCTATACTGGAGAGGGTGACCTGAGCACCATCACagacaagaacaagaacaaagTGACTCTTCGCAGGGACACTACAGGACTACCCCTCTGGATCATGAGTCCTGATGGACAGACCTTTTGGTTCACTATCGGAACTAATAACGCTCTCAAGAGTGTCGCTGCGCAAGGCCAAGAGCTGGCAATGATGACCTACCATGGAAGTTCTGGACTGCTGGCAACCAAAAGCAATGAGGATGGATGGACCACTTTCTATGAGTATGACAGTTACGGGCGATTGACGAACGTGACCTACCCCACAGGCAGGGTGAGCAGCTACCGCACTGATGCTGACAATGCAGTTCGGGTGCAGGCTGAAGGCTCCAACAAGGAGGACATCATCGTCACCACCAACCTCTCGGCCTCTGGAACCTTCTACACGCTTATGCAAGAGCAAGTGAAGAACAGCTACTACATTGGTCTGGACGGCTCTCTGAGGTTGGTGTTGGCGAATGGCATGGAAGTGTCTCTTCATACAGAACCCCACCTGCTCTCGGGTACGGTCAACCCAACGGTCAGCAAGAGGAACGTCACGCTGCCCATAGACAATGGCCTCAATTTAGTGGAGTGGAGACAGCGGAAAGAGCAAGCCAGGGGGCAAGTGACTGTATACGGACGCAGACTGAGGGTTCATAACAGAAACCTGCTGTCCATGGATTTTGACCGCATCACCCGAACAGAGAAAGTATACGATGACCACAGGAAGTTTACACTGAGGATCCATTATGACCTTGCGGGTAGACCCACCCTGTGGGCTCCGAGTAGCCGACTGAATGGGGTAAATGTCACCTACTCTCCGGGTGGACATGTGGCCGGCATCCAAAGGGGAACCATGTCAGTGCGAATGGAATACGACCAAAATGGGAGAATTACTTCGCAGATATTTGCAGATGGCAAGTCTTGGAGCTACACCTACCTTGAGAAGTCTATGGTGCTGTTGCTCTACAGCCAGCGACAGTACATCTTTGAGTTTGACAAGAACGACCGTCTCTCGTCAGTCACCATGCCCAATGTGGCCAGGCAGACCCTAGAGACCACTCGCTCAATTGGCTACTATAGAAACACATATAGACCTCCTGAGGGCAACGCAACTGTGCTACAGGATTATACTGAAGATGGCCTCCTTCTGCAGACTATGCACCAGGGCACTGGACGTAGGATCATCTACAAGTATGGAAAGCTCTCCCGTCTGCTCGAGATTCTGTACGATACCACACGGGTTGCTTTCTCGTATGATGAGGCAGCAGGCATGCTAAAAACTGTCAGTCTACAGAGCGAGGGTTTCACCTGCACCATCCGCTACCGGCAGATTGGCCCACTCATCGACCGGCAGATCTTCCGCTTTAGTGAAGAAGGCATGGTCAACGCCAGATTTGACTACAACTACGACAACAGCTTTCGAGTCACCAGCATGCAGGCTGTCATCAATGAGACACCATTGCCCATCGACCTCTATCGCTATGATGACGTCTCCGGTAAGACGGAGCAGTTTGGCAAGTTTGGGGTCATCTACTACGACATCAACCAGATCATCACAACAGCTGTCATGACCCACACCAAGCACTTTGATGCCTACGGGCGAGTCAAAGAAGTACAGTATGAGATCTTCCGCTCACTAATGTACTGGATGATGGTCCAGTATGACAACATGGGTCGAGTGGTAGCCAAAGAACTAAAAGTAGGGCCCTATGCCAACACCACAAGGTACACGTACGAGTACGATGCAGATGGGCAGCTCCAAGTGGTGTCCATCAATGACAAGCCCCTGTGGCGCTACAGCTATGATTTGAATGGTAACCTGCACCTGCTGAGTCCAGGTAACAGTGCCCGCCTCACTCCACTGCGCTACGACATACGGGACCGTATCACTCGACTCGGAGACGTCCAGTACAGGCTGGATGATGATGGCTTCCTCAGACAGAGAGGCAATGACTTCTTTGAGTACAACTCTGCTGGTCTGCTGATCAGAGCTTACAGCAAAGTTGGAGGATGGAGCATAAAGTACCGCTACGATGGTCTGAGTCGCAGAGTGTCCAGCAGAAGCAGCCAGGGCCACCATCTTCAGTTCTTTTATGCAGACCTATCCAGCCCTACAAGAGTCACCCACATGTACAACCACTCCAGCTCTGAGATTACTTCACTATACTACGACCTTCAGGGCCACCTCTTCGCCATGGAACTAAGCAGCGGTGATGAATACTACGTGGCCTGCGACAACATTGGCACACCACTGGCTGTTTTCAGTGGTTCAGGTCTTATGATTAAGCAAATCCTCCACACAGCATTTGGCGAGGTTTACCTCGACTCAAACCCCAGCTTTCAATTGGTGGTGGGCTACCAGGGTGGCCTCTACGAACCCCTTACCAAACTGGTGCACATGGGTCGCAGGGACTATGATGTTTTGGCTGGCCGCTGGACCACGCCTGACCATGACATCTGGAAGCAGCTGAACGACAACAACATTGTGCCCTTTAACCTCTACATGTTCAAGAACAATAACCCTCTGAGCAACACGCAGGAGACCAAGTGCTACATGACAGATGTGAATAGCTGGCTGGTGACGTTCGGCTTTCAACTGTATAACGTCATCCCTGGCTATCGAAAACCAGTCACCGATGCCATGGAGCCGTCTTACGAACTCATTCACACCCAGGTGAAGACGCAAGAGTGGGACAGCACCAAGTCTATCCTTGGTGTCCAGTGTGAAGTCCAGAGACAACTCAAGTCTTTCGTCCGTCTGGAACGATTCGACCAGATCTACAGAGCGAGTGCTGCTGGCTGTCAGCAATCCCCCGGTCGGACGTCCTTCGCGTCTGGAGACTCCATGTTCGGCAAGGGTGTGAAACTGGCCATCCGAGAGGGTCGTGTAAGTGCGGACATCATCAGCCTGGCCAACGAGGACGGTCGGCGTCTGGCTGCTGTTTTGGATCAATCTGTTTACCTGCAGGACCTTCACTTCACCATTGCGGGCGTCGACACCCACTACTTTGTTAAGTCGGGGTCAGTGGAGGGTGATCTGGTACTGCTGGGCATGACGGTGGGCCGGCGGACGCTGGAGACGGGCGTTAACGTGTCGGTTTCTCAGGTAAACGCTGTGATGGGTGGCCGAACACGACGCATCACGGACGTGCGGCTGCAGCACGGCGCGCTGAGCCTGAACGTGCGGTATGGCAGCAGCGTGGAGGAGGAAAAGGTGCGGGTGCTGGAGCTGGCCAAACAGAGGGTGGTTGAAGCGGCCTGGGCTCGAGAACGGCTAAGGCTGCGGCAGGGCGAGGACGGCACGCGCACGTGGACTGACGGAGAGAGGCAACAACTGCTGGCCTCAGGCCGTGTGCAGGGCTACGAGGGCTACTACATGGTTTCTGTGGACCAGTTCCCCGAACTGGCCGACAGCATCAGCAACGTCCATTTCCTGCGACAGAGTGAGATGGGCCGCAGGTGA

Function

GO:

id name namespace
GO:0032289 central nervous system myelin formation biological_process
GO:0010976 positive regulation of neuron projection development biological_process
GO:2000543 positive regulation of gastrulation biological_process
GO:0031643 positive regulation of myelination biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0048714 positive regulation of oligodendrocyte differentiation biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042803 protein homodimerization activity molecular_function
GO:0046982 protein heterodimerization activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18473 lncRNA downstream 44298 26002331 ~ 26006680 (-) False nars2
TU18477 lncRNA downstream 74995 25971405 ~ 25975983 (-) True G13769
TU18382 lncRNA downstream 292944 25755941 ~ 25758034 (-) True G13685
TU18327 lncRNA downstream 526682 25523787 ~ 25524296 (-) False LOC111193738
XR_002650679.1 lncRNA downstream 532772 25516786 ~ 25518206 (-) False LOC111193737
TU18522 lncRNA upstream 11507 26311435 ~ 26311750 (-) True G13801
TU18745 lncRNA upstream 370191 26670119 ~ 26698793 (-) True G13960
TU18751 lncRNA upstream 376843 26676771 ~ 26677906 (-) True G13963
TU18925 lncRNA upstream 637948 26937876 ~ 26962565 (-) True G14112
TU18923 lncRNA upstream 661798 26961726 ~ 26962565 (-) False G14112
XM_007236776.2 mRNA downstream 35915 26002366 ~ 26015063 (-) True nars2
XM_007236775.3 mRNA downstream 52114 25912599 ~ 25998864 (-) True gab2
XM_007236774.3 mRNA downstream 145406 25828923 ~ 25905572 (-) True maml2
XM_015602309.2 mRNA downstream 370022 25673937 ~ 25680956 (-) True nudt8
XM_022675523.1 mRNA downstream 370026 25673872 ~ 25680952 (-) False nudt8
XM_007237658.3 mRNA upstream 413080 26713008 ~ 26724170 (-) True LOC111188176
XM_022675705.1 mRNA upstream 434680 26734608 ~ 26768101 (-) True gak
XM_022675710.1 mRNA upstream 473102 26773030 ~ 26817911 (-) False sh2b3
XM_022675713.1 mRNA upstream 473102 26773030 ~ 26805159 (-) True sh2b3
XM_022677967.1 mRNA upstream 524928 26824856 ~ 26833613 (-) True fam109a
TU18474 other downstream 34582 26007242 ~ 26016396 (-) False nars2
TU18373 other downstream 324822 25724913 ~ 25726156 (-) True G13677
TU18307 other downstream 556526 25473734 ~ 25494452 (-) True G13630
TU17900 other downstream 2142207 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 2247160 23784471 ~ 23803818 (-) False LOC103035686
TU18746 other upstream 378353 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 530093 26830021 ~ 26833598 (-) False fam109a
TU18929 other upstream 599077 26899005 ~ 26902713 (-) True G14113
TU18930 other upstream 599077 26899005 ~ 26902713 (-) False G14113
TU18940 other upstream 723585 27023513 ~ 27029917 (-) False fam214b

Expression Profile