RNA id: XM_022675710.1


Basic Information

Item Value
RNA id XM_022675710.1
length 4301
RNA type mRNA
GC content 0.51
exon number 8
gene id sh2b3
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26773030 ~ 26817911 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGCGCTCGCTCCTGTTTAATTCAGCATGCGCGCCGCGGGCTCGAGCGCTGCAGTGCTCCTCAGCTGTGCTGGTTACTGCGATGAATGGTAACACTATCCAGCAGACCACGAGCAGCGTGCCGCTCCTAGCGCCCCCCTCTGACTGGAAGGAGTTCTGCGAGTTGCACGCCAGCGTCACGGCTCGGCAGCTGGCCCTGCACTACCGGCACTTTGCCAGGGCCCGCCCGCCGCACGATGTCTTCCCCCCGGAGAGCTTCAGCCAGCAGTTCAGCACCCTCTTCCAGCAGCACTTCTGCAGCGAGGTGGCCAAAGATGCCCTGCTGCCGCCTCCGCTGCCACTgccgctgccgccgccgctgccCGTGATGACCAGCCATGTGCGCATCACCTCCATCTCTGAAGCTCTGGATTACCGGGAGCCGAGCAGCGCCACCCTGCTGGGCGTTCTGCCGGCCAAACCGGACGTGGTGACGGTAAACCGGGAGCAGGAGCGGCCTTTACGCTGTTCGCCCAATGACACTACAGGCCGAACTCTCGGCCACGCCCCCGACGAGGAAGAAGAACCTCTCCCACAGCGCTCGAATGTCTCAAACATCTCGAACACCTCAGTCAGTCGTTTCCGACGGAGATTGAGCCAGATTTTTAAAAAGCGATCTCCCCCGGAAGATCGCATCCACAGCAGTTCCGGGGACGAATCGGAAAGGAGGGGTGTGGCCTCAGGGACGGCCGATCGTCTCTCCGCCTCTCCGTCTCCCCCGTCTCCCCCGACAGCGCCTCCCAGTGGCGCACATCTGCTGACGCGTTTTACTCAGAGCTTCAGGAAGCGGCAGCAGAGCACAAAACGGCAGCAGGAAGGTGGCAGCACCTGTATGGACGGGCAGCTGCGGTACCTGGTGGAGGACGACAGTATCTCCGACACGGCGCCTCGGTGGCAGCGCTGCCGCCTGCTGGTCAGGAGAACAAGCAACAGGTTTCAGCTGGAGCTCTACGACCCACCGAAGggttCGAGTCCGAAGCTGACAGCACGCTGTTCCGACATCATCGATGTTCGACGCTGTAATCGACTCGAGATGCCGGATAACATGAACACATTTGTATTaaagGTTAATCACTATCAGGGCAGTTTTATATTCGAGGCGGAGGACGAGCAGCAGGTCAGCTCCTGGACGTCAGAACTGCGAGGGTGTATCAACAACAGggctGATGGCGTGGAGCCACAGTTAGTCTTCTTTCCTGTGGGTGATTCTGTAGCAGCAGTACGGAGGGGGAGCGCGGAGTCTGGCAGCCAGAGTTCTCCGAGCTTCATGCTGGAACAGGCGTATCATAAAACAGACCACTTCCTGTCCTCCTACCCCTGGTTCCACGGCCCCATCTCCCGAAACCGGGCCGCCTGCCTGGTCCAGCACGCCGGGGTCGGGGGTCACGGCAACTTCCTGGTCAGACAGAGTGAGACACGGCGAGGAGACTACGTCCTGACCTTCAACTACCAGGGCAGAGCCAAGcaccTGCGTCTGTCTCTGACGGAGTGGGGTCAGTGTCGGGTTCAGCACCTCCGTTTCCCCTCTGTAGTCGACATGCTCGCCCACTTCCGCATCTCCCCAATCCCACTGGAGTGTGGGGCAGCGTGTGACGTCCTATTGGCCAGTTACATCCTGGCCACGCCCACTCACTCAGgTCATTGTTCTGCTCTGGGAACTCCAGTTCTGGTGCCTTTCTCTCGCTGCAGTTCAGAACCGAGTCTGGCTCACTGTGGCCTCGACCCGTTTGCTCACTCGCCTCCATCGAGCGCTCCACCCACCGGGGCCTCCAACACTCCCATGCACCGCCCACCGCTCTCCGATCGTCCGGCTCCTCCCCCCGATCGCCTGGGCCCCGCCCCCCTGCGCCGCAGCGAGTCTGTGGGCCGCCGGACTCTCCTCCGCCACCCCAACCCACTGCCCCCTCTCCTCCACAGCCGCGACTCGGATTACGAACTGGAGCCGCCCGACAGGGGGCGCAAGAGAGCCATCGACAACCAGTACATGTTCTTCTGATGGAGAGAACGAAGCAAGACGTCAAGAACGCaagaaaacagcagcagcagcacagaacGACCGACCGACGACCGCTTCTGGAACAGAGCACTCTCCAGCCAGACAGAAGTGGCTTCTTTCTCCAGTAGGGGGCGCAATAGAAGAAGCCAGCAGATTCACCAGCGTTCTCTGGTgcgggagagagggagggtctTCCTTTAGTCACTTAACTGTGGGGGGAGGTGGTCCAGAAAGCCCTCCTCGTGCAGAACTGCCGTGACGCAGGGTCCGTTAAACCAAACTCCTGTTCCGTAAATCAAAAATCCGTAAATCGTAACTGATAACGGGTCAGAACTGATAACCGATAACGCGTCGCAGAACGCGGAGGGTCTCCTGCAGGGTCACGAGGATGGCGGCAGATTGTGTCTCTGTGCAGAGCTCACGTAACAGACGCACTCTTCACTAATCCCTTTTGCATTAGTGAGAGGTCTGACAATCACGTCCACcatgaatgtattttttaagagtttttgcCACTATTAAGTAGGGAGAAGTCAAACGGACAGGAGACAGCATCCGCCAGAGTACAGCTTCTCCACTCCGGTCAACAAGAACCGAAGAGTTCAGAAGAGTTCAGACGTTGGGTTGGTGTGACTTGcctttgtggaaaaaaaaagagtgtgcTCAGTTCCATCTGTGGAGAGTTACAGCCCTGAAGAGCTTAGTTTCAACAAAATAGCCCAAAATGTCTCAATTGGTGCCTCAAGTGGCACCACAAAGATACTTTAAGGACTTTAAAGAGTTCTGGTTGGTAGGTACAGTATGTTGTCAAAAGTATTTACTGGTAGTATGAGATGTTGGCCAATATGATGTCAGCCCAACATTTTGCATCTATAACAGCTTCAACTTTTCCTGAGAGGCTTTCctcaaggtttaggagtgtgtttatggtcaTTCTTGACCGTTCTTCTTAAAGAAGAGCATTTGTAGGTAAAAAACTGATGCTTGACAATAAGATCTGGCTCACAGTCTCCACTCCAAACTCACCAGATCATCCATCTCCATCTTTATGGAGCTTACTTTATGCTCTGGTGCACAGTAGTCATGTTGGAACAGGAAGGGAATGTTCCCAAACTTACCGCAAAGTTAGGAGTGTGAAACTGAAGGTCATGATCTGGTTGGTCAGGTTTGTTTGATTAGAACTGAAACTGAAGTCTGGGCTGCAGTAAATCTTCAGGACTGAAATTGAGCTCCTCCTATAGAGCAGTGCTCTTTAAAGCAGCTCTTGGGATGCTGCAGAAGGTCCAGATATGTGTTAGCGTTAGCACTTGTCGCTGTATAAGTGGCGTTACCCAGAATTGCTTAAGCCCAAAGATCATCCCACACTTCAGAAACTCCACAGTCAGTTCCGTTCCAAACCCCCAACACTCCTGATTACAGTGATGAAGAGCCTGACAGCACTTTTCAACTGATCCAAGTGTTGGACCTGGAGTAGAGCACGAACATCAACACGAGGACTGGGGACTCGGGCAGGCGTGTGATGTAttacttaattattaaataaatcagattactGAGTGTTGGACTAGGAAAAGCCATCAGGTCTCGTTTATAAAGGTTTATATTACTATAataattaggcctgtcacaataattacattgtgtttgcacttacagAATGAGGCAAGTTCCTTATGCCAGTCCAACGCGgtccagctgggacagaccaaGGCCGCACGTTTtactgtctttaaaagggtgtagttccgttgttatgatattatgttattattatattaatgacattattataatataatataatattgtttatcgcaataattcgGACAGCATATAATTTGCAAAAAactgttatcgtgacaggcctaataataataaatcatatcTTCTGAGGAGACCTTTAATAGACCTGTACGAAGTTCTAGAAAtctagaaaagagtaaaagtactctAAAAGtactctatcaaaaaagtgaagTGAGTAGAAGTTGGAGtgtctttaagctccacacttaagtaGAAGTACTAAAGATTCAAAAATGTTTGTACTTAACTACTGCAAGTAGTGTATTGGAAAAGtgtagtactgaagtactgaaagtaaaagtacagtactgtgttatgtagttattacaaaagtaaaagtggaagtagttCCGTACCTAAGTGGTGTATTCAAAATAATGCTTgtcagtacttaagtacttaattaaagaagtaaaaataatactccaatagagtacagatacagtattttagtactctAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18745 lncRNA downstream 74237 26670119 ~ 26698793 (-) True G13960
TU18751 lncRNA downstream 95124 26676771 ~ 26677906 (-) True G13963
TU18522 lncRNA downstream 461280 26311435 ~ 26311750 (-) True G13801
TU18473 lncRNA downstream 766350 26002331 ~ 26006680 (-) False nars2
TU18477 lncRNA downstream 797047 25971405 ~ 25975983 (-) True G13769
TU18925 lncRNA upstream 119965 26937876 ~ 26962565 (-) True G14112
TU18923 lncRNA upstream 143815 26961726 ~ 26962565 (-) False G14112
TU18945 lncRNA upstream 145731 26963642 ~ 26964693 (-) True G14125
TU18961 lncRNA upstream 227597 27045508 ~ 27046047 (-) True G14130
TU18962 lncRNA upstream 228958 27046869 ~ 27047115 (-) True G14131
XM_022675705.1 mRNA downstream 4929 26734608 ~ 26768101 (-) True gak
XM_007237658.3 mRNA downstream 48860 26713008 ~ 26724170 (-) True LOC111188176
XM_022675652.1 mRNA downstream 473102 26050978 ~ 26299928 (-) False tenm4
XM_022677967.1 mRNA upstream 6945 26824856 ~ 26833613 (-) True fam109a
XM_022675716.1 mRNA upstream 17583 26835494 ~ 26859057 (-) True LOC103042772
XM_007241691.3 mRNA upstream 66945 26884856 ~ 26886411 (-) True LOC103036237
XM_022677718.1 mRNA upstream 97529 26915440 ~ 26921251 (-) True LOC103036549
XM_022677728.1 mRNA upstream 115343 26933254 ~ 26936810 (-) True LOC111194248
TU18746 other downstream 74237 26678281 ~ 26698793 (-) False G13960
TU18474 other downstream 756634 26007242 ~ 26016396 (-) False nars2
TU18373 other downstream 1046874 25724913 ~ 25726156 (-) True G13677
TU18307 other downstream 1278578 25473734 ~ 25494452 (-) True G13630
TU17900 other downstream 2864259 23904183 ~ 23908771 (-) True G13322
TU18787 other upstream 12110 26830021 ~ 26833598 (-) False fam109a
TU18929 other upstream 81094 26899005 ~ 26902713 (-) True G14113
TU18930 other upstream 81094 26899005 ~ 26902713 (-) False G14113
TU18940 other upstream 205602 27023513 ~ 27029917 (-) False fam214b
TU19514 other upstream 2795701 29613612 ~ 29643303 (-) False emp2

Expression Profile