RNA id: XM_022675731.1


Basic Information

Item Value
RNA id XM_022675731.1
length 2327
RNA type mRNA
GC content 0.53
exon number 10
gene id poli
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26947658 ~ 26958832 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCGAGTTTATAGAGGAgatctgtgtttttattctctttagttTACCGTTTCTTTTCTCCCTGTAAAATCAGGTGATGGACTcaggtgaggaggaggaggaggagcctgGCTGGGGAGTGATGGAGACAGGTGTTGTGGGCGGAGCTGTGGAGGACAGTCAGAGGGTCATCCTTCactttgacctggactgtttctaCGCTCAGGTGGAGATGATCAGAAACCCCGCCCTCCGGTCCAAACCTCTAGGAGTTCAGCAGAAGTACATCATCGTGACGTGTAACTACGTGGCGAGGGAGCGCAGCGTGACGAAGCTGATGGGAGTGAAGGAGGCGCTGGAGAAATGTCCTGATCTGGTTCTGGTGAAGGGAGAGGACCTCACACACTACAGAGACATCTCCTACAAGGTTACAGAGCTGCTGATGTCGTTCTGCCCCCTGGTGGAGCGCCTGGGCTTTGATGAGAACTTTGTGGACGTCTCAGAGATGGTGGAGACCAGGATGAAGGACACGAGTATCTCAGATCTCTCGTTCGTGGGTCACGTCTACGGACACGAGGCCTCGTCCGTGGAGGTGGGAGATCACTCCAGGCTGGCGGTGGGATCGGCGATCGCGGCTGAACTGCGGGAGGCGCTGAGGAGCAGGCTGGGGTTGACCAGTTGCGCCGGCGTCGCCACCAGCAAACTCCTGGCCAAGCTGGTCTCCGGAGCCTTCAAACCCAACCAGCAGACCACGCTCCTCCCCCAGAGCAGCGCAGAGCTGATGAACAGCCTGAGCGGACCCTGCAAAGTACCTGGGATTGGCTACAGGACGGTGGAGAAGCTGAAGGTTCTGGGCGTGGTCAGTGTGAGGGATCTGCAGCTGTTTCCTCTGAGGGATTTGATCCGTGAGTTTGGTGAAGTGAACGGCAGGCGGATACAGAACCTTGCATGCGGCGTTGACCTTTCACCTGTGACTCCTGCAGGACCTCCACAGTCTCTGAGTGATGAAGACTCCTTTAAGAAGATCTCCACAGTGAGGGAGGTGCAGAGTAAAGTGACTGAACTGCTGAACAGCCTGTGTGAGAGgatgtGTAAGGATGGCCGGTTGCCGCAGACTGTGAGACTGACGCTCAGACGAGCCTCAGCTCCGAGCCGCTGGTTCAGCCGAGAGAGCCGACAGTGTCCCATACCCAAACACACCGCCCAGAAGATCATAAccgGCTGCGGGGAGGCGGTGCCTCAGCTGCTCTCTATAGTGATGAAGCTGTTCCACAAGCTGGTGAACGCTGGTGACCCGTTCCACCTGACCCTGCTGAACGTCTGCTTTAGTAACCTGCAGACCAAGAACTCCGGCAGGAACGCCATCAGCTccttcttcacacacacaacaaccagtgcagctcacacacacgtacaggaaacAGGTACAGAACTTGGTGTGTGTGAGGAATCATCCAGCATCACTCAGGCAAATCCAGCATGTGGAACACAAAACACTGAGAGCACTAAAGAGCTTCTGAAGTGCCAAACATCAACAGCATCCTCCTCAGCATCATCTGCATCACCATCATCAGCATCCTCATCATTCTTCCAGAATGCTCTGCTCCAGTCCATCAGAAGCAAACCCTCCACATCCCCCAGACAACCAGTTTCTAAACACTCAGGACCGAAAACTACAAGTTCTGGAAGGAGCAGTACTCTAGAAACACAGAAATCTCCTAAGCTTCCTCCTCACGTCGACCCTGACGTCTTCCAGGCTCTTCCAGAACACATCCAGAAGGAGCTAATGGCTAGTTTTCAGACTGGAGATGCACTTCCTGAAGATTCTATAGAAAACCCAAGTCCAGTAGCAGCCCCGGCCCGTGCTGAGCGCCCAGAACAGCAGACCCAGGCTCATATAAACCAGAAACAAACATCTCAGCTCAGTCAGATATCCCTGAACCAGAGCCACCAAATAGAGCATAGTAATATTAATGTAGCTCAGTCCCAAAATCATAACCTCTGTGACAGCAGTTCTACAGAAAGCGCTATTAGCCTCCCTGATGTTCCACCTAACGTAGACCCCCTGGTCTTCTCCCAGCTCCCCTCAGACATGCAGAACGAGCTGCTGGCTGAGTGGAAGCAGCGCAAACCCACGCTTAAAATCTCCTCCACCAAACCTGCGACCAAACAATCAGCATCCCGAGACCACAGACCCGCGGCCAGAGCATCCCAGAACAACAGCCTGCTGAAGTATTTCAAACCCAACTGAGAgaatttttgctatttataggtaaatatttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctctccaaattccaaatta

Function

GO: NA

KEGG:

id description
K03510 POLI; DNA polymerase iota

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18745 lncRNA downstream 248865 26670119 ~ 26698793 (-) True G13960
TU18751 lncRNA downstream 269752 26676771 ~ 26677906 (-) True G13963
TU18522 lncRNA downstream 635908 26311435 ~ 26311750 (-) True G13801
TU18473 lncRNA downstream 940978 26002331 ~ 26006680 (-) False nars2
TU18477 lncRNA downstream 971675 25971405 ~ 25975983 (-) True G13769
TU18923 lncRNA upstream 2934 26961726 ~ 26962565 (-) False G14112
TU18945 lncRNA upstream 4850 26963642 ~ 26964693 (-) True G14125
TU18961 lncRNA upstream 86716 27045508 ~ 27046047 (-) True G14130
TU18962 lncRNA upstream 88077 27046869 ~ 27047115 (-) True G14131
TU18959 lncRNA upstream 152396 27111188 ~ 27125507 (-) True G14128
XM_022675726.1 mRNA downstream 1455 26939843 ~ 26946203 (-) False wdr31
XM_022675723.1 mRNA downstream 1455 26939843 ~ 26946203 (-) True wdr31
XM_022677728.1 mRNA downstream 10848 26933254 ~ 26936810 (-) True LOC111194248
XM_022677718.1 mRNA downstream 26407 26915440 ~ 26921251 (-) True LOC103036549
XM_007241691.3 mRNA downstream 61247 26884856 ~ 26886411 (-) True LOC103036237
XM_022675746.1 mRNA upstream 13460 26972252 ~ 26982609 (-) True ankle2
XM_022675748.1 mRNA upstream 25092 26983884 ~ 27007880 (-) True golga3
XM_022675754.1 mRNA upstream 50755 27009547 ~ 27019342 (-) True ranbp1
XM_022675759.1 mRNA upstream 64703 27023495 ~ 27038746 (-) True fam214b
XM_022675771.1 mRNA upstream 169806 27128598 ~ 27319845 (-) False LOC103032722
TU18929 other downstream 44945 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 44945 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 114060 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 248865 26678281 ~ 26698793 (-) False G13960
TU18474 other downstream 931262 26007242 ~ 26016396 (-) False nars2
TU18940 other upstream 64721 27023513 ~ 27029917 (-) False fam214b
TU19514 other upstream 2654820 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 2798895 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 2930443 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 3302226 30261018 ~ 30268350 (-) True rps15a

Expression Profile