RNA id: XM_022675746.1


Basic Information

Item Value
RNA id XM_022675746.1
length 4067
RNA type mRNA
GC content 0.54
exon number 14
gene id ankle2
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26972252 ~ 26982609 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAAGAAACAGTAGCATGGCAGGCTGTTAGCACAGCAgctaatttacctcagaaagGTGATAATACAGGGCGGAGAGGGGGGATAGCGGGGTCGCCGCGGGGCCTGAGGGGCGGATTAGACCGTGAGGGTCACCGGGAGCCCCGCCGCTCCTCCGGCGGGCGGAAAATTaacacaataacaacaacagcagcggCGGCGACTGGGATGGAGCTGCAGGACTACTGACACAGCCCAGCGCGCGCTcgcgtgtgtgtgagaaggaGCAGCAGAGCCCCTGTGTGCAGGAATAAAGgTGCAGTATGGAGGCAGCTCTGAGCCGGCTCAGGGCCCTCACCGCTGATGAGCTGAGGGAGGAATTTACGAAGGCCAACTTGAAGTGCGGCCCAATCACGGCCACCACGAGGGCCATCTTTGAGAGGAAGCTCGCCCGGGCGCTGCTGGAAACTGCCGGGATCTCTGAAGCAGACGGTGGCGCTGCTGATGGCGGGCAATGTGTCTCCACAGAGGCGTGTGGGGCTCCTGCAGGCCCTCCCCCGGTTGCTGCAGTGGGAGAGGAAGGAGACGTGGGGTACGATCTGGGTCTGAACCCGCCGGAGGAAGAACCGCTGAGTGATAAAACCCAAGCGACCTCCACTCAGCTCGACACACAGACCCCCTCAAAAACCCTGCACATCTCCCCTACCTTCTACTATGGGGTGTGTCCACTGTGGGAGGATGTTCTGGCCAGGAATGAGCGGGCTCACGTGTACATGGATAAGAAGGAGGCTCTGCAGGCGGTGAAGCTGATGAAGGGCGCGCGGTTTAAGGCCTTCTCCAACCGAGAAGATGCCGAGAAGTTTGCCAAAGGAATCTGTGACTATTACCCCTCACCCAGCAAGGGGGCGCCGTGTGTTTCACCTGTTAAAGCTGGACTGGGCTTCTCCAAAGcgGAGGGCTCGGTGGAGACGGATGGTATAAATCGGGAGAAGGCGAACAGTTTTAAGAGTCCGAGGACGCAGGATCTGACGGCGAAGCTGCGGCGGGCGGTGGAGAAGGGGGACGAGGTGGCGTTCGGCGAGCTGGTGTGGAGTAACCCTCGCTACCTCATCGGCTCCGGGGATAACCCCACCGTGGTGCAGGAGGGCTGTCGGTATAATGTGATGCATGTAGCAGCGAAGGAGAACCAGGGGGGCGTGGCTCAGCTGCTCCTGGACACTCTGGAGAACCCCGAGTTCATGCGCCTCATGTACCCCGACGACCTGGAGAGCATGCTGACCAAACGCATTCAGTACATCACTGACCTGTACCTCAACACACCCGATAAAGCTAGTTTTGAGACTCCACTCCACTTCGCCTGTAAGTTCGGCTCCGCGGCCGTGGTGAACGTTCTCTGCTCGCATCCTGACATCGACAAGAACTGCAAGAACAAGTACGACCAGAGACCCGCTGACGTTGTTTGTGAAAGAATGAAGGACAAAAGTAAAGTCCAGGACGTCAAGCAGAAGATTAACGAGTATCTAGAAGACCGCTTTTACGTGCCCCTCCTACGAGCTGCTGATAACTCATCCCAGCCTGTGATTGGTGCTCCTTGGTCGCCGGAGCCGCTGGAAAACCGGTCGCCACGATTACCCAGAAGCCCCATGGACCCTGTGATGGCGGTGAGGGCCTTTGCCGGCCCTTTAAGTCCTTCTAAAGCGGATGAATTCCGGAAAGTGTGGAAGACGCCCCCTAGAGAACGAGCGGGGCATTTTCACAACATACTGAAGTCTGATCCAGACCGCGGCGCTGAAAGGGTCGGCAGAGACCTGGCGCGGGAGCTGGGACACCCCTGGGCGGAGTACTGGGACTTTCTGGACAGCTTTGTGGATCTGGCGTCGGCTGAAGGTCTCCGGCGGCTGGAGGAATATCTGAGTAAGAAGgagttcagtgtgtgtggtCATAAAGAGACGGGCGAAAACGAGACCAGCAACAAGTTCAGAACTCCGTCTCCAGgtaAACCGAAGAAGTTCAGCAACTCGGTGTCGGTGGGGGCGTTCCTGGACGAGGGAGCAGATATCTCTCTGGAGGAGATAAAGAATCGGCAGAACGCGGCGCTGACCAGCTGTTCTAAAGACAGCCAGCGGGGGGCGTCAGGGGGGCTGGAGTTCCACATCCTGCCGGTTTCGCACGGCTCCGCCCTCATCGAGCACGAGCTGCTTCTTTCCGACAAGACTCTGAACGGGCAGGTGGGCGGAGACCGGACTCAGAACGGCGGCGGCGGCGATGAAACGACGAAACGAAGCTCCGCCTCCTGCCTGCTGTCGCCCATTTCCAACCTGATGGTGGAGTTTGAGCGCATGTCTCTGCGGGACGAGGAGACGGAGAGCAGCCCGAGGGAGCGGAGGAGGAGCGGCGGGAGGCGGCAGCGGGACGTCCCAGACATCAGCCGGCTCAGCCTGGGCCCCGGGGACGACGGCGCCGTGTTCACCGAGGGAGAAAAGGACGGGGCGGAGGGGGCGGAGCTGTCCAGCGGCAGCTCGGAGGAGTATTTCCTGGCGGAGGAGAATGTGGAGAGTGGCAGGACTAGAGTGGGGGAGCGGCAGGTTTGCTCCCGCTCCAGGTCGTGGGAtcactgtagctccgcctcctcggGCTCTTATAAATCGCTGGACCGCTCGAACGAGATGATCTTGACCACGCCTCCACGAGCCCGGAAAACTCTGTTCATTGAAGGGGAGTCTCCCACCAAACTGGACCGAGAGGTTCTGGCAGCAGTAGAAGGCGCCGAGATTGACCCAGAGAAGTATCCCACCGTTCACAAGTGGAAAAGCACAATTCAGTCCTTCTCCAGCAGCGATATGCAGAGttggccGACTCCTGCTATCTTGAGGAGCTCCAGGCTGCAGTCGTTGACGCCAGGCTCTCCAGTCAGTGGTTTGGTATCTCCATCAGGGCGTTACAGTCCAGCCAGACTTGCATATTCACCAGACGTTTCCAGTCCTGGACGTTACAGCCCCGCCCACGCCAGTTACAGCCCCGCCCACACCGGCTACAGTCCTGCCAGCTACATCCAGCGTATTCGCCTCAAGCATTTTGGCGACTCGCCCATTTAACGAATGCTTACCCGTTCTCCAGCAGCACCTCGCCCACCCGAAAGCGACCGGGCCCTCCGGCTTCGTCCCTCCGAATGTAGGAAAGGAATTCAGCGTCTCAGAACCACGACTTTGTTCACTCAGAAACAAAACTCGCTCCCAAACTCAGACACGTCTCAGCGGTTCTGAAAAATAAACTTTACGTGGTACTTTAGTGCGGGGGTACTCATCATGAATGgtagtgtatatttttaaacaagtgtcttttttttttttttctcttatataaatatatataaatatgaatatatatatatgtgtgtgtgtgcgtgcgtgcgtgcgtgcgtgcgtgcgtgagAGAATATTGTCCATAATTATTTATGggtaaaacaattttaaaaataaataaataaaaatctgcagCACATTTTTACAACACCCTGATCCTCCCTCGCACATAAAACCGCTCCTAATTGggacattaaattaaataaaattaatttaagttaaattaaaaacaaaatgttttatttttttcagtgtaactCAGTAGCTCAAAAGTCATATTCCATTAAAGAACGTCCGTCTCTCTGCCTTAATTTTCTGCAGCCTCTCTAAACGTCACTGCGCCCCCTAGTGGGCATCAGCAGTGTTCAGTTCTCAAACTATGACCTGTTCTAACGCTTTAACGTTGTTTTGGAATGTGAAACGAGTCTCAGTTGTGGATTATAAATGTGTGACGGTAATGATAATTAAAGTTTGCCTTTGCTTTGCACTTTTAAAGCTTCTTTTCGTTAGTAATTCTTTAAGTACTGCTTTGCACATGCGTAAAACATTTTTCAGCAGGTATTTACAACAGCaaaacttaaaaacaaacaaaaaaaaaacatctctcaTAAAAGCGATAGTTCAAGAGGTGCACAGAATATTTGCCAACCAAGACGAGTCAGCCAGAAATGGCAGGAAAGTGCTATCATGTTCAGCCGAAGAACTGAAAAGTAAAAACTTAGCCATTTA

Function

GO: NA

KEGG:

id description
K21412 ANKLE2, LEM4; ankyrin repeat and LEM domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18945 lncRNA downstream 7559 26963642 ~ 26964693 (-) True G14125
TU18925 lncRNA downstream 9687 26937876 ~ 26962565 (-) True G14112
TU18923 lncRNA downstream 9687 26961726 ~ 26962565 (-) False G14112
TU18745 lncRNA downstream 273459 26670119 ~ 26698793 (-) True G13960
TU18751 lncRNA downstream 294346 26676771 ~ 26677906 (-) True G13963
TU18961 lncRNA upstream 62899 27045508 ~ 27046047 (-) True G14130
TU18962 lncRNA upstream 64260 27046869 ~ 27047115 (-) True G14131
TU18959 lncRNA upstream 128579 27111188 ~ 27125507 (-) True G14128
TU18984 lncRNA upstream 444193 27426802 ~ 27430492 (-) True G14152
TU18988 lncRNA upstream 476274 27458883 ~ 27462491 (-) True G14156
XM_022675734.1 mRNA downstream 13420 26947658 ~ 26958832 (-) False poli
XM_022675731.1 mRNA downstream 13460 26947658 ~ 26958792 (-) True poli
XM_022675726.1 mRNA downstream 26049 26939843 ~ 26946203 (-) False wdr31
XM_022675723.1 mRNA downstream 26049 26939843 ~ 26946203 (-) True wdr31
XM_022677728.1 mRNA downstream 35442 26933254 ~ 26936810 (-) True LOC111194248
XM_022675748.1 mRNA upstream 1275 26983884 ~ 27007880 (-) True golga3
XM_022675754.1 mRNA upstream 26938 27009547 ~ 27019342 (-) True ranbp1
XM_022675759.1 mRNA upstream 40886 27023495 ~ 27038746 (-) True fam214b
XM_022675771.1 mRNA upstream 145989 27128598 ~ 27319845 (-) False LOC103032722
XM_022675768.1 mRNA upstream 145989 27128598 ~ 27319845 (-) True LOC103032722
TU18929 other downstream 69539 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 69539 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 138654 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 273459 26678281 ~ 26698793 (-) False G13960
TU18474 other downstream 955856 26007242 ~ 26016396 (-) False nars2
TU18940 other upstream 40904 27023513 ~ 27029917 (-) False fam214b
TU19514 other upstream 2631003 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 2775078 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 2906626 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 3278409 30261018 ~ 30268350 (-) True rps15a

Expression Profile