RNA id: XM_022675768.1


Basic Information

Item Value
RNA id XM_022675768.1
length 9177
RNA type mRNA
GC content 0.51
exon number 35
gene id LOC103032722
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27128598 ~ 27319845 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTATCCCTTCACTTGGTTCGAGCGCATCAGCATCATGGTGATCCTGCTGAACTGCGTGACTCTGGGCATGTACCAGCCGTGTGAAAACATCGACTGCACCTCCGACCGCTGCCAGATTCTGCAGgCATTCGATGCTTTCATCTATATCTTCTTTGCTCTGGAGATGGTGGTGAAGATGGTGGCTCTGGGGATCTTTGGCCGTCGCTGTTACCTTGGCGATACTTGGAACAGACTGGACTTTTTCATCGTCATGGCAGGgatGGTAGAATACTCCCTTGATCTCCAGAACATCAACCTCTCCGCCATCAGAACAGTGCGTGTGCTCAGGCCGCTCAAAGCCATCAACAGAGTGCCAAgtatgCGGATCCTGGTGAACCTGCTCTTGGACACTCTGCCCATGCTGGGGAACGTCCTCCTGCTCtgcttctttgtcttcttcatctTCGGCATCATTGGCGTGCAGCTGTGGGCGGGGCTTCTGCGGAACCGCTGCTATCTTGAGGATAACTTCACCCTCCCCTCCGGTATCTCACCGCCCGTTCCATACTACCAGCCGGAGGAGGATGACGAGCGGCCCTTCATCTGCTCCCTGGCACAGGACAACGGCATCATGTCGTGTACGGATGTGCCGACGCGACGGGAGGGCGGTACGGAGTGCTGTTTGGATAAGGAGGACGTTTTGCATCGGCACGCGCTGGGCCTGAGCGCCGAGCCGTTGGTAAACGGCAGTGTTTCAGCTATGGGTCTCTGTGTGAACTGGAACCAGTACTACACCCGTTGCTTCACGGGCAACAGCAACCCGCACAAAGGAGCCATCAATTTCGACAACATCGGATATGCCTGGATAGTCATTTTTCAGGTGATCACTCTAGAGGGCTGGGTGGAGATAATGTACTACGTGATGGACGCACACTCTTTCTACAACTTCATCTACTTCATCTTTCTCATCATCATCGGCTCCTTCTTCATGATTAACCTGTGCCTGGTGGTCATCGCCACTCAGTTTTCGGAGACGAAGCAGCGTGAGCACCAGCTGATGCAGGAGCAACGTGCCCGCTGCCTCTCCTCCAGCACTCTGGCCTCCATGACTGAGCCCGGGGACTGCTACGAGGAGATTTTCCAGCTGGTGTGCCACGTCCTGCGCAAGGCCCGTCGACGCTCTGCTGCCCTCTACTACACCCTACGGGGCAAAGCTCCACCCCCAGGGGGAGGGAGGGGAAGGAGCAGGGGGGGTCCAAATGTGAACGGAGGAGACAGGCGCCACTGCCATTCAGCTCAGGGTTCTCAGTGTCCACATCAAAGCAAGCTGGACCACAGTTCCCAAACCCTGGACAATGCCATCGCACTGTCCATCACCCCAAACCCAGAGGAGTGCCCGCAGTGCGCGGCCAGCCGGGAGGAGGAAGGGGCCCTGGAGGAGACGGACCGGGAGGAGAACCATTTAGAGGAGAGAATGGAGAAGGACATGGAGGATGAGGacgaagaggaagaggaggaggaggaagatgggaagaaaaagaagaagaagaagaaaaagaaaaggaaaaagaagcGCTCGTGTTTTGGGATGTGTAAGGACGTGTGGGATGATATGCGGGTGAAACTGTGGAGTATAGTGGAGAGTAAATACTTCAACCGAGGAATAATGATCGCTATCCTGATCAACACCATCAGCATGGGCATCGAGCATCACAACCAGCCTGAGGAGCTGACCAACGTGCTGGAGATCTGTAATATAGTCTTCACCAGCATGTTCACCCTGGAGATGATCCTCAAACTGACAGCTTTTGGCTTCTTCGAGTACCTGAGGAACCCCTACAACATCTTCGACGGCATCATTGTCATCATCAGtgtgtgtgagatcaTTGGTCAGTCTGACGGGGGTCTGTCGGTGCTGAGGACATTCAGGCTGCTGCGGGTGATAAAGCTGGTGCGCTTCATGCCGGCTCTACGCAGGCAGCTGGTGGTCCTCATGAAGACCATGGATAACGTGGCTACTTTCTGCATGCTGCTCAtgctcttcatcttcatcttcagTATCCTGGGGATGCACATATTTGGCTGCAAGTTCAGTCTGAAGACCGAGGCTGGAGATACAGTTCCGGATCGCAAGAACTTTGATTCTCTGCTCTGGGCTATCGTCACCGTGTTTCagatccTGACTCAGGAGGACTGGAACATGGTGCTGTACAATGGCATGGCCTCCACCTCCCCTCTCGCTGCTCTGTATTTCGTGGCCCTCATGACCTTTGGGAACTACGTCCTGTTCAACCTGCTGGTGGCCATTTTGGTGGAGGGATTTCAAGCcgagGGAGATGCTAACCGCTCCTACTCGGATGACGACAGGTCCTCCTGCAACTTTGAGGAGACGGAGAAAGAGAAGGATCCTCTCCAGCTGTCAGaTCCCAAAATCTGCACCCTCACCCCCAACGGACATCTGGATCTGGCTATCGCGCCCAACGCCCTGGGTGTCTACCCTGCCGAAAGGCTAACCTTCGCTCTGGGCTCGCGCAAGAGCAGCGTTAGCTCCTTGGGGAGGGCTAATCTGGAGCAGAGAGCGCTGTGTCCAGGTCGAGGGTCCCTCTACTACAACTGGGGTCGTCCAGCCCCTCAGGGCCCGTGGAGCCGCAGGTCCAGCTGGAACAGTCTAGCCCGGCCCTCCAGGAGCCTGGCCGTGGGGGGAGGAGGCAGCCTCAGGGTCCGTGGACCGCACTCCCACGAGCAGGAGTCACTGTtagctcctcctcctgctcaccTGCCTCCAGCACTTCTATCCAGACACTTCGTCCCCAGAAGGGACCGCCGGGCCCTCTCGCTGGAGCTGCCCGAGCTGCTGCCAGTACCAGGGCCCCCCCTGCACCCTCGCCAGCGCAAGAAGAGCTGCTCAGGGGCCCTGGGGAACGCCGGGGAGCATCAGGACTGCAACGGGAAGACGCCGTCAGTCCAGCAGCACATCCTGAGCGAAGTCTACCCACAGGTCAACACCCGCAAGGACAGAGAGGACCTGGAGGATGAAATCGATTATAGTTTGTGCTTTCGGATCCAGAAGATGATGGAGGTGTACCGGCCGGACTGGTGCGAGACGCGGGAGGACTGGTCCGTCTTCCTCTTCTCCCCTCAGAACAAgTTCAGACTGTTGTGTCAGTCTATCATCGCTCATAAGCTGTTTGATTATGTAGTGCTTGCCTTCATCTTCTCAAACTGCATCACTGTGGCTCTGGAAAGACCCAAAATCATCCAGGGCAGCTTGGAGAGGCTTTTCCTCACCATCTCTAATTACATCTTCACTGCCATCTTCGTGGGTGAGATGACACTAAAGgtGGTGTCTATGGGTTTGTACATTGGAGAGCAGGCGTATTTGCGGAGCAGCTGGAACGTTCTGGATGGTTTCCTGGTGTTCGTCTCGCTGATTGACATCGTGGTGTCGATGGCAGGTGGCGCTAAGATCCTGGGGGTGCTCAGGGTCCTCAGGCTTCTGCGCACATTGCGCCCCCTCAGGGTTATCAGTCGGGCTCCGGGGCTGAAGCTGGTGGTGGAGACTCTGATCACCTCTCTGAAGCCCATCGGCAACATCGTGCTGATCTGCTGTGCTTTCTTCATCATCTTCGGCATCCTCGGAGTTCAGCTTTTCAAAGGCAAGTTCTTCCACTGCCTGGGCCTGGACGTCAAAAACATCACCAACAAGTCCGACTGCCTGCTCGCCAACTACAAATGGGTCCATCACAAGTACAACTTTGACAATCTGGGCCAGGCTCTGATGTCTCTCTTTGTACTGGCTTCAAAGGATGGCTGGGTTAACATAATGTACCATGGCTTAGATGCAGTTGGAGTGGACCAACAGCCCATCACCAACAACAACCCCTGGATGCTGCTGTACTTCATCTCCTTCCTCCTCATCGTCAGTTTCTTCGTGCTGAACATGTTCGTGGGCGTGGTGGTGGAGAACTTCCACAAGTGCCGGCAACAccaggaggtggaggaggccaagaggagagaggagaagagactACGGCGCATGGAGAAGAAGAGACGGAAAGCCCACAAGCTCCCGTACTACGCTAGCTACAGTCATGCACGCCTGATGATCCACACACTGTGCACCAGCCACTACCTGGACCTcttcatcaccttcatcatctgtGTTAATGTAGTGACCATGTCCCTGGAGCACTACAGCCAGCCTCCCTCTCTGGAGATCGCTCTCAAGTACTGTAATTATTTCTTCACCAGCACCTTTGTGCTCGAGGCTGTCTTGAAGCTCATTGCGTTTGGCTTCCGTCGCTTCTTCAAAGACAGgtggaaTCAGCTGGACCTAGCCATAGTGCTGCTGTCAGTAATGGGCATCACCCTGGAGGAGATTGAAATCAGCGCAGCTTTACCCATAAACCCCACCATCATCCGCATCATGAGGGTGCTCCGCATCGCCCGAGTGCTGAAGCTGTTGAAGATGGCCACTGGAATGAGAGCGCTGCTGGACACTGTGGTCCAGGCATTGCCTCAGgtgggGAACCTGGGCCTTCTCTTCATGTTACTGTTTTTCATCTATGCTGCACTGGGAGTAGAGCTGTTTGGAGAACTGGTCTGTAACGAGGACTACCCGTGTGAGGGCATGAGCCGGCATGCCACCTTTGAGAATTTCGGCATGGCCTTCCTCACTCTCTTCCAGGTGTCCACCGGTGACAACTGGAACGGCATTATGAAGGACACCCTTCGCGAGTGCCCACCAATCACAAGCTCCAGCACCGAGGTGAACTGTAACCCCAGCCTGCAGTTCATCTCTCCGCTCTACTTTGTGAGCTTCGTGCTGACGGCCCAGTTCGTCCTGATCAACGTGGTGGTGGCCGTGCTGATGAAGCACCTGGACGACTCCAACAAGGAGGCGCAGGAGGAGGCGGAGATGGACGCTGAGATCGAGATGGAGTTGGCACAGGGCACTCTGTGCTGTATGGGTGGAAtgagtggaggaggaggaggaggtggaggaggaggaggaggagtaggaggaggtggaggtggaggaggaagaggagtagATAAAGGAGAGAAGCATGGAGGAGGCCGTGGTTCTGAAGCTCTGCCACACTCTCCAAATCCACTGCCTGGACAGGAGGCCAACGGCTCCCGCAAACTATACTCTCCTGCCCAGGAGAATCTGTGGCTGGACAGCGTCTCTCTGCTCATCAAGGACTCCTTTGAGGGAGAGATGCTGCTGATTGACAACCTGTCGGGCTCAGTCTTCCACCACTACTCCTCCCCTCCAGTGTGCAAAGACTGCAAGAGTCATCCTCAAGAGCAGATCCACATGGCTGAGCTGGAGCAGGCGTCTCTGCGATCCGAGCAGCTCTCGGACAAATCCTCGTCTCCGGCGCTGCCTGATGACCTCAGCCTGGACGAGCAGAGCATGTTCCAGCTGGTAGTGAGGGAGAGTAAGGAGGACCGGTGCGGTGGAGAGGATGCGGCAGCAGGAGGTTGCAGAGGGGTGATGAGAAGGCCGTCTCGGGTACACAGCGCCGGGGCTGAAGACGGTCCTCAGAGGCAACTCCACCACCCTCACACGCCTGCCCGGCATAGTATAGGTGGTGCTCCATGTAGCAGCAGTAGCAGAGGAgatgaaggagtttctggaggtgcggGTGACTCCTCCTCTCTTTTCCATCTCCCTGCAGAGTTCTTccatccagcagcagcagccctgcCAGCACCCCCCAAAGGCCATGCGGGCCATAAGCCCAGAGGCCTCAGAATGACCTCTCCAGCATCCTGGGCCTCCCTGCGCTCACCTGGAGTCTGCAAACTGCTCACCGCACAATATGCCTCTCACAGCGACTCATCCTTGGCTACGGGCAGTTCGGAGGGAAGCCTACAGACAACCATGGAGGAAGGACTGAGCTTCAGCGTATCGTCTCCGCTGGACCCCGACTTTCCACTCCCTTTGCTAGAGCCACTGCCTGACAggggcgctgctgggctttccaCAGAGACCCTGAGACCGGCCGATTTGGCTGAATTTAATCTCTTATCCACCAGGGGACACCAGCGCagccagagcagcagcagccctgGAGAAAGCCGACAGGGCTCTAGCCAGGCCAGCAACAGCGAACAGTTATCCGAGACACTGAGCAGCCTGTCATTAACATCGCTGCTTTCGCCCAGCTCTCTAGCGCCCCCTCCAGTGAAGAAGTGCAACAGTACGGGGGATTTGGGGCAGGGTGCCGTTTCGACCCGGGGCAGGGAGGCAAAGCAACTGTTTGTGAAGGATCCTCAGGGTCACCTCGCCACCCCGTGGGTGGAGGGGAGGAAAGGGTCTAGGAAAGAGACATCTGAAGCATCGGGATTCGAAGGAGAAAGTAGAGTAACGGTGGCGTATTCCAGGAAGAACAGATGAAACgttctttgttgttgttgttgtttcacTCTACAGTCCACCACTCTACCTCTCCGTGTAGGTttggtttttgggttttttggtttgtcttttctttttggCACGGAGACATTCGACACGTGAGATTCCGTACTACAAACCGAAAAACAAAACCTGATCTCGCTCtgttctctcaatctctctctctccactttcCAATTTGTATGCGCTTATGGAAATGGTTCCCACCTGTAATCGAGAGGGCTGTGGAAGAGCAAGGAAGACGAACAAGCGAACGTGGAATGCGACAAAACTCTTTGAAGAGCCACTAGTGGATCCCGATGGCTCGCTCAAATCAGGGAGTCTGAATGCAAGAGCAAGAGTTGCAGGAGCCGTTGGCGGATTAAGCAGTTTTTCATTCACATTTTTTCGGAATTTAAATCAAATCTAAAATCAAGAAGATTCTAGTATGTAGCTCATGCTCAAGAACCAACAACGGGACTGCGGTACAGAACTATTTTTGCTTCTTGTAGAAAGGGCATGCACATGCAATTAGGATTAAAGCATCTTGCAGTGGAAGGTTATAGAATCCCAGCTATATTCAGCAATGTTGTGCACATGCAGTAAATCGTAGAACGTTATCGTGTGCTTGCATGcgtccgtgtgtgtgtatgtgtgttactgtgtctctgtgtgcgtgtcctctgtgtgtatgtgcaagGTTTTTCAAGGGCCCAGAGTCAAGGGCCGACTGGCTCTTGTCGGGAGAGTACCCGTCACGGCCAGGCACTACTGAGTGGAGCAGGATCGGAGTGATGGGAGGCTCTGGACGAGTCTGACCTGAAAGGATCAAACAAATTACGAACTCCAGGTGCAAagtgaaaaaaagcaaaaaaaaaaaaaaaaaaatacaaagatacCCACAATCTTCTGCATGAAGGCATCTTTCTGCAGACAAGCCGAAGTTTTAAACACACCGAACCATGTGAAGATGTCAATGCTGGATGATAGCAGTCAGATTTTTTCttagatatttttataaactGGATTTGGCGGTAAAGCAAACGGGGGAATTGGATATGTTGTGTTTGCCTTGTCTTTACCCCATCCCTGATGTTTCTCCATCTTATTTGAAGCTGTTTCCTGCAAGTGACTTCCAGTTTTATAACTTTGACTAACTTCGGGGGGGAGGTTTTATACACGGGAAGAAAACaaccatgcaaaaaaaagtgtattataaaatgtagattggagtatgtttgtgtattttggagggaaaatctGCCAGATGCAAAGTAGGACGTGGAAGTTGACGTGGAGCTGGCGCACCACTGAAAGAGGACATTCTGAAGGTTGAGGTGGAAATGGAAAGGTACTGTTTGAGAGAAAACTACATTCTGAAAGCTTTAATTTGAGTGTCACATGACATTACTAGGTTTATCAGATTACACATTATCGTTCTCCGGCATGGTTACTGTACTGGACTCTGTAGAACATTTCTAGCAGTTTGCACTCGGATTCGCTCTACATACCATCACTAGTTCTTTTGGATTGACCAGCCACTTgatttatgtacattttatgtATCTTTTAAACCTGTAAGTTTGACACTCAAAGCATTCAAtgagaaaacagtgttttagtgtAGTCTACTGTAGCATTTAGCATCCCTGATGTGTTTCCTTGCTAGAAATCTAGGGATTTGAAATTTGGCTTGACCTGTTGAACTTCATTTGATCGGTAGTGGTTGTCTGTCCATAAGATATCATTGACTGACCAGTGTATAGTATATCGACGATGTTGTGGTATTTAACCAAAACTGCATTAGCTCTACTCACAGTGCTTGCGTTATGCTGGCGAACATTGAAGTGCTagggtttatttaaaaatataaaagacacAAATTTGAAGGGCTTTCTCACTTTCCATGATCTTTCCAAATGATCTTGGATATTTTAAGGATATTTTATTCCGCTTATCAGCAAACAAAACATTGAAGGTTATACAGACTGATGCAGCAATAAGGTATAGCTTCGGATGCCCTTGATATGCCTAAataatatttctgtattttacaatagtaaaatatatggaGGCTTAACCTAACAAATCATTTTCCTTATGGACTGCCACCGGTTCCGATGAAATAAATGAGGTCATTTAGAACTCAGGGCCTTGGAACATACCACTAACAAATGCTCTGGTTTTTCAGAGCTTGAGCATTATGGGAAATTATGGGGACATTTGTGAGTGCTTGAGTTGAGACACCTCCTTTAATGCCCTGATCTCATAAGCTTACATCAGTGTATCATGAATATGGCACAACACTGGCACCAACTGACCACTACACAGAGATTGGCCCAATCTTGCGACATAAAACAAGTAGTTTTGCCTCATCCACAATCCTCCATCCTTACAGTTTGTTAGCATACTACTGTAGAGCtgtgctagtgctaatgctaattcccACTTTAGCCATTGCACAATAGCCATTGCTTTATTCTTAGCCGTAGCCAAACCTGTCTCTGTCAGTCTAAATCAGTCTTAAATCTGAACAAAACAGTAAGATGCTATGGACGATGCTGGGTGTCATGTCATGTTTATGAAAGGCTTATGTAAGGTTAAGGGTTAAGCGGCTAATGACGTAGAGTGTTAGAtgaggttttcatttttattaccaGGCACTCCAGGATGACGTGTATGGTTTCTGAGGTGAACGTATGTACATAACTTTGTATATTGAACTGCATGTGTGCTATGCTACCAATGACAATGAAACCTTCATGCATTTTCGAGAGTCTGAGGGTGA

Function

GO: NA

KEGG:

id description
K04854 CACNA1G, CAV3.1; voltage-dependent calcium channel T type alpha-1G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18959 lncRNA downstream 3091 27111188 ~ 27125507 (-) True G14128
TU18962 lncRNA downstream 81483 27046869 ~ 27047115 (-) True G14131
TU18961 lncRNA downstream 82551 27045508 ~ 27046047 (-) True G14130
TU18945 lncRNA downstream 163905 26963642 ~ 26964693 (-) True G14125
TU18923 lncRNA downstream 166033 26961726 ~ 26962565 (-) False G14112
TU18984 lncRNA upstream 106957 27426802 ~ 27430492 (-) True G14152
TU18988 lncRNA upstream 139038 27458883 ~ 27462491 (-) True G14156
TU18989 lncRNA upstream 151573 27471418 ~ 27472733 (-) True G14157
TU18998 lncRNA upstream 268401 27588246 ~ 27643371 (-) False G14163
XR_454482.3 lncRNA upstream 300390 27620235 ~ 27621121 (-) True LOC103038133
XM_022675759.1 mRNA downstream 89852 27023495 ~ 27038746 (-) True fam214b
XM_022675754.1 mRNA downstream 109256 27009547 ~ 27019342 (-) True ranbp1
XM_022675748.1 mRNA downstream 120718 26983884 ~ 27007880 (-) True golga3
XM_022675746.1 mRNA downstream 145989 26972252 ~ 26982609 (-) True ankle2
XM_022675731.1 mRNA downstream 169806 26947658 ~ 26958792 (-) True poli
XM_022675775.1 mRNA upstream 90034 27409879 ~ 27507368 (-) True LOC111193779
XM_007260748.3 mRNA upstream 230464 27550309 ~ 27569402 (-) True LOC103029886
XM_022675778.1 mRNA upstream 257918 27577763 ~ 27589298 (-) True alg1
XM_022675793.1 mRNA upstream 284727 27604572 ~ 27629246 (-) True LOC103033698
XM_022675825.1 mRNA upstream 532331 27852176 ~ 28024801 (-) True LOC103034330
TU18940 other downstream 98681 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 225885 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 225885 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 295000 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 429805 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 2293767 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 2437842 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 2569390 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 2941173 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 3569761 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile