RNA id: XM_022675775.1


Basic Information

Item Value
RNA id XM_022675775.1
length 1866
RNA type mRNA
GC content 0.49
exon number 2
gene id LOC111193779
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 27409879 ~ 27507368 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TCACTCCacctaacccccccccccctttctcctcctcctcttccaaACCCTTCCCACTTCCAGCAGCACCTGCCTTCACTGCATCTCCGGCTCGTGCTGCCTGCCGCGTGCTGAGACACTGTATGCGCGTGCATGATGAGTATGTGCAGTGTGCGCGTGTGTAGCGCGCGGAGCGGTTCTGCTTATTATGCACGCGGAGGCTGGCGGCACGAGCGTCTTTAAGGAGCATCTATATGGacttgtctgtttgtttgttaatttgtttgtttgttttggctcCGCCTTCAGCGGTAAAAGAAGAAGGTGCAAAAAAGAAGGAATAGCAGCAGCACCGGCAGCGCGAGCAGACCCCTGTGCATGGTGCACGAGCGGATAGCGTAAAGAAGGGGGTAGAGGACCACCACGACCACTAAACTTCAGCACTGCGCGCGGATGGCTGTTCTTCTTTGGATGCACCTGCCAGATCGCCGCGCCGTGAGCGCGCGGGGACGCGCGATTGAAGTTGCCCTTTAAGACGCGGCGTCTGCGAGCGCGCATTGGGAGAAGTCCGTTGGGGGTCTTTGAGGGGCTTCTGTGGATTACTGTGTcacttttgttgtttgttattaataatattattattattgataataGTAGCGTTGTTATTGCTGTTATTAACATTCTTAACATCCCCTCCGCCATGCAGATGAGTCAGAGCGCGAGCGCCGGGCTGTGTTTCGCCGCGAGACCCGGGAAAACGAGACGATGCAGGATGCAACGCTTCAAAGGACTCCTCGGTTTTAGCATCAGCGCGTGAACACCAAAGTgaatcagtgtttttcttttttttcggagtactctttttaattttatccGATATTTTTCCGGTTTCAGCTCTTTTGCATTTTGGTTCTGTATTTTTAGCTcattttgcgtttttttttatttgttgttgaaTTTTTGTTATCTTTCTGCTTTGGCTATTTTTGTTTCGCAATttttattccatattttttgttgcatttttctgttctgttttttgttatgtttttttgcagcAATACAAAGTGCACTAAGGTGACGACAACAAGTAACAGCAACATATTGGATAATAAAAAGTAGTGAACTGTCTTTAACGGATcgttttcttttcttaaaaaaaaaaccttttcacGTTTTAAAGCTGGAGGATCGTTTCTACCAGAACGCGGTGGATGCACTGGATGCACGGGAACAGTGGGAACTCAAACTGGGATTTTGTTGCTGGAGATATCAGCGCAGaagttatgtaatgtaatgcacaCCTGAAAAAAATGACACGCACCACCAGGTCCTCTGGAGAACCTCCAAAAACCGCACTCTTGGTGATTAAACCCTAACATTTTAGGGAAGAAGTAATCGCACATTCCTGGAAAGCAGCGATTCAGCGTCCGGCTTCAGCTCAGCTATTTCATGTCAGACAAGGCTGCCGCTGCGTCGCCATGACGACCGAGGAGTGTCCCATGCCGCTGGCTGTGAGCCAGGCAGGTGCGGGGCTGTGTGAGGATTACGGCCCCTCCCAGGGGGACGACATCATTGAGGAGGTGGGGCCCGATGACGCGGCCAGCGACCTCAGCACACTGGTGGTGCCGTTTCCGGAGCTGGCGCCGGTGGTCTTCTTCTGCTTAAAGCAGACCACCTGCCCTCGCAACTGGTGCATCCGCATGGTCTCTAGCCCATATCCTTTACAGACCAAAATCTACGTCACTGTGAGTCATGAGGTTCTTTACTGACCTGTCTTGGGTCAATTTCTCCAAGGTGCTTATGAAGGAACGGTACTGCGGTTGAGGTGTGACAAATAAACGTCTGTACAGGTGCGTgtaaaaaaagtagaatatcattgaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18959 lncRNA downstream 284372 27111188 ~ 27125507 (-) True G14128
TU18962 lncRNA downstream 362764 27046869 ~ 27047115 (-) True G14131
TU18961 lncRNA downstream 363832 27045508 ~ 27046047 (-) True G14130
TU18945 lncRNA downstream 445186 26963642 ~ 26964693 (-) True G14125
TU18923 lncRNA downstream 447314 26961726 ~ 26962565 (-) False G14112
TU18998 lncRNA upstream 80878 27588246 ~ 27643371 (-) False G14163
XR_454482.3 lncRNA upstream 112867 27620235 ~ 27621121 (-) True LOC103038133
TU18999 lncRNA upstream 132545 27639913 ~ 27678903 (-) True G14163
TU19115 lncRNA upstream 209149 27716517 ~ 27779305 (-) True G14265
TU19146 lncRNA upstream 407296 27914664 ~ 27915156 (-) True G14280
XM_022675771.1 mRNA downstream 90034 27128598 ~ 27319845 (-) False LOC103032722
XM_022675768.1 mRNA downstream 90034 27128598 ~ 27319845 (-) True LOC103032722
XM_022675759.1 mRNA downstream 371133 27023495 ~ 27038746 (-) True fam214b
XM_022675754.1 mRNA downstream 390537 27009547 ~ 27019342 (-) True ranbp1
XM_022675748.1 mRNA downstream 401999 26983884 ~ 27007880 (-) True golga3
XM_007260748.3 mRNA upstream 42941 27550309 ~ 27569402 (-) True LOC103029886
XM_022675778.1 mRNA upstream 70395 27577763 ~ 27589298 (-) True alg1
XM_022675793.1 mRNA upstream 97204 27604572 ~ 27629246 (-) True LOC103033698
XM_022675825.1 mRNA upstream 344808 27852176 ~ 28024801 (-) True LOC103034330
XM_022675832.1 mRNA upstream 344808 27852176 ~ 27940834 (-) False LOC103034330
TU18940 other downstream 379962 27023513 ~ 27029917 (-) False fam214b
TU18929 other downstream 507166 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 507166 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 576281 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 711086 26678281 ~ 26698793 (-) False G13960
TU19514 other upstream 2106244 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 2250319 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 2381867 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 2753650 30261018 ~ 30268350 (-) True rps15a
TU19826 other upstream 3382238 30889606 ~ 30892648 (-) False LOC103045124

Expression Profile