RNA id: XM_022676307.1


Basic Information

Item Value
RNA id XM_022676307.1
length 1752
RNA type mRNA
GC content 0.60
exon number 11
gene id pdlim7
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31880794 ~ 31943297 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GAGTCCTGCTAAAAGTGGTGGTAGAGGGAGAGCGCGCGCTGCTGAGCGGAGTTACCCGAACCTCCACCCCGCTGAACTACAGCCTGAACCCGGCTACACTACAGCTCCAGCCCCGCTACCCTACAGCCTCCACCCGCCGCCCGCCCGGAGCCTGATCACCATGTCCGGAGACACCAAGGAGGCCATGAACATTTACTGCGTGACGCTCGCCGGCCCGGCGCCCTGGGGCTTCCGGCTCCAGGGAGGGAAGGACTTCAGCATGCCTCTGACCGTATCCAGGctgACTCCTGGAGGAAAGGCCGCTCAGGCCGGAGTGGGCGTGGGGGACTGGGTCGTGTCCATCTCAGAGACCAACGCTGAGGAGATGACTCACGTGGAGGCGCAGAACAAGATCAGAGCAGCAACCGACTCCCTCACTCTGACACTCAGcagagCTTTCCAGCCTGGTGGAGGTGAACAGAAGGGTTCGCTTGCTCCTGCACCCAGCCAGCCTAAGTACTCCTTCACGCCGAGCAGCAGCATAAACAAGATGGCGCGGccgttctcctcctcctcctcctcctccgctgCCGCTAATAACTCCAGCACAGGGCCCGTCATCAAACCGGTGGCGTACTCGGCCAAGTTTAACCCCGCTGCCTCTAACCCCAGCACGCCGGCGGCGGCCAGCACGCCACAGTCCCACAATGGCCACGGAGTCACGCCCTGCCCCCCCACCACCAAACCAGCACCCAAACCCGAACCGGCCAGAGctccagccaaACCTGCTAACTCCACCGGTCCATCCTGTCGGCCCCCGTGGGTAACAGACCCGAACTTCGCCGAGCGGTACCACCCGGACAAGACCAGCACGGTGGTGACCCAGCACAGCCAGCCGGCCCAGCCCACGCCCATGCAGAACCGCAGCTCCATCCTGCAGGCGGCGCAGCAGAACCCGGCCGAGAGCACCGGCCGCACCCCGCTCTGCGGAGCCTGCAACAAGATCATCAGGGGGCGCTACGTGGTGGCGCTGGGCCGCTCCTGGCACCCGGAGGAGTTTACGTGCTGCCAGTGTCGGGTGATGCTGGACGAGGGGGGGTTCTTCGAGGAGAAGGGCTCTGTTTACTGCACCAAGTGCTACGACAATCGCTACGCCCCCAACTGCGACAAATGCAAGAAGAAGATAACCGGAGAGATCATGCACGCCCTGAAGATGACCTACCACGTCCAGTGCTTCCTGTGCGCCGCCTGCAAAACGCCCATCAGGAACCAGGCCTTCTACATGGAAGAGGGCGAGCCGTACTGCGAGAGAGACTATGAAAAGATGTTTGGCACCAAATGCCACGGCTGCGACTTCAAGATCGATGCGGGCGACCGCTTTCTGGAGGCCCTGGGCTACAGCTGGCACGACACGTGCTTCGTCTGCGCTCTTTGCCATATCAATCTGGAGGGGAAGACGTTCTATTCGAAGAAGGATAAGCCTCTGTGTAAAGGTCACGCCTTCTCTCCTCTCTGAGGAGCTGAGCTGCAGAGCTGGAGAGGCTCTGAGGAGGACGGTCCAGCTTCACTTCCTACACTTCACCCAAAAACCCTTCAGCTCCGGCCACTCGGACCAACCAACGTTTAAACActaggaagagagggagagagagtgtattTGTGGACCAAGGTTTAATATGGGATTTTTCTAATGGgagatctacaggggttggacaatgaaactgaaacacctgtcatcattttagtgtaggattttaggtttcatggctaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20186 lncRNA downstream 951 31877805 ~ 31879843 (-) True G15022
TU20185 lncRNA downstream 1346 31877805 ~ 31879448 (-) False G15022
TU20187 lncRNA downstream 1346 31877805 ~ 31879448 (-) False G15022
TU20202 lncRNA downstream 3833 31845182 ~ 31876961 (-) True G15037
TU20188 lncRNA downstream 259497 31529337 ~ 31621297 (-) True G15023
TU20235 lncRNA upstream 51336 31994633 ~ 31995062 (-) True G15063
TU20251 lncRNA upstream 89754 32033051 ~ 32040230 (-) True G15074
TU20253 lncRNA upstream 89754 32033051 ~ 32038565 (-) False G15074
TU20256 lncRNA upstream 89754 32033051 ~ 32040230 (-) False G15074
TU20261 lncRNA upstream 99044 32042341 ~ 32045045 (-) True G15078
XM_022678020.1 mRNA downstream 658371 31216232 ~ 31222423 (-) True LOC107197536
XM_007245593.3 mRNA downstream 755648 31106308 ~ 31125146 (-) True LOC103034575
XM_022676251.1 mRNA downstream 797502 31058768 ~ 31083292 (-) True LOC103047264
XM_007245599.2 mRNA upstream 12309 31955606 ~ 31958456 (-) True higd2a
XM_007245601.3 mRNA upstream 30295 31973592 ~ 31995512 (-) False rnf44
XM_022676341.1 mRNA upstream 30295 31973592 ~ 31990648 (-) True rnf44
XM_022676347.1 mRNA upstream 30295 31973592 ~ 31990641 (-) False rnf44
XM_007245604.3 mRNA upstream 102812 32046109 ~ 32055172 (-) True abhd18
TU19927 other downstream 825291 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 956847 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 957545 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 988146 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 199431 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 870777 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 870777 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 870777 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 2191295 34134592 ~ 34136732 (-) True G15497

Expression Profile