RNA id: XM_022676559.1


Basic Information

Item Value
RNA id XM_022676559.1
length 3700
RNA type mRNA
GC content 0.55
exon number 15
gene id LOC103027351
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 33035849 ~ 33073381 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

cactcgcgcgcgcacacacacacacactcgagcGGGTATAGAGGGGAGCGTCACACTGCAGCTCTCCGTTAGAGAGAAACGACACACCGAGTCATTCTCTTCTCTGGTGAGctTTGACCAATCACGGACGATGATGTCGGTGCACAAGCCTTCGCTCAGGCGCAGCGCATCGACATTAGAATCGACCAATCGCAGCGGCTCTGGTGTGACCCCGCCCACAACCCTCAACCTGCGCTCCTCACACAACCAACAGCTGAGTCGTGACATCATAAAAGAGGGCGTGGTCTCCGTAGCCGCAGAGACACAGGGCTCAGGGCCACCTCCAAAAAGCCGCCATAAATATGCAACTACCAATCTGCAGAGCGCCATGGGATTGGAGGACACTGGCTCCGCCCCTTTTGGGCAGAACCGTACTAAACCCGCCCCTAAAAAGTCGGcctcctcctcgtctctctATTCGTCCTCTTGCGTCGCGCTTTCGCTATCTCTCTCGACGTCCAATCCGAAGCTGGCGAAGAACGGCACCAACCTGCAGCTGAAGGAGACGCAGCAGGACCTGAACAAGAAGGACAAGAACCGCAATGACGTCGGAGACTGGCCCGACAAAGAGAAGAGCGCCCCCTTCAGGCGGAGGACCAAGAGCTTCTTGGAGTACCATCGAGAAGAGGACGAAGAGACGTCCAACAGTCCAGCGGAGAAGCAGCCGGAGAGCCCGGTCCATGAAGTGGAGAAGCCACTCTTACCCCAGCTGGAGCCACAAGCCTGGGTCAAAGAGAACCGGGTGGAGGTCCACCTCACGCTGCCCCAGAACCACCTGCTCCTCCTACCTGGAGAAGACGAGGACCAGAGCCCCCCCGACTCACACCTGAGCCAGAGGGAGGGGCTCCACCCCAGCAAGGAGCAGCTGAACCGGGCGAAGGACACGGCCGGGGAGGACATGGGTTCTCCAGCCAGGCCCAGGCTGCAGGTTCTGTCCGGTCTGGGCCAGAGACTGGAGCGGGTGGAGGCGCCGACCAGGCAGGAGAagcaggtggaggaggaggtggaggaggaggaggaagactcCAGCTGGACGACTCTGTCTCAGGAGAGTCCGTCCATAGAGACGCCGCAGGAGACGGGTGTATGGAGTGACACAGTGCTGCCCCCTGGCTGGAGGGAGGTGGAAGACGTGTCTGACGTTTATTTTTGGCACATTCCCACCGGAACCACCCAGCGGGAGCGGCCCATAACCTCCACCAATCACCATCCGCCTGAGCCGGACCTGCAGCCGGAGGGGGCGCGGGGGCTCTCGTCCCTCTCTGTCCCGCCCCCCAAAACTCAGACTGAGagGCCTAGTAGCATCGTGTCGGATAGTTCTGTGGAGCCCGTGCCTTCATCATCTGCCTCTTCACCCTCCTCATCCTCACTCTGCTTGGAAGGGGCGGGGCCTGTGAACAGCTTCCTCAATAACAACTACCTGGACCTGAAGGAGGCCTCCATCCAGCCCAGCGAGtccagagagcgagagaggcgGCGAGTGGAGGAGCGGGGCGAGCGAGAGAGCGTTagagtggaggagaggagggagagagagagaggttgtgAGGGGGCTCGCTGCATGCCTTACAGCTACGTAAACCTGAGAGCGAGGGTGGGGCCTGCTCCCGCTGATACAGTCATCCCCATTGATGATCTGGAGTCTCAGgtgTACCGGGTGCGGTCTCTGGGCTGGATGGAGGTGTATGAGGCGGACATGGTGGCGGGCAGGAGCAGTGCGGTGGTCAGCGACTGCATCAGACACCTGCAGAACCCGGACACGCCCCCTTACACACCTTCACTCcgccggagagagagagcgagcgcgggagagagagaggaggggaAAGCGATGCTATTGGTTCTGCAGGACATCACGTTGACCCTGGTTGACCCCGTTGACCACACCCTTCTCCACTCCCAGCCAGTCAGCAGCATCcgtgtgtggggtgtggggcGGGACCACAGCAGGGATTTTGCGTACGTGGCTCGGGATAAGAACACGCGTGTGCTGAAATGTCACGTGTTCCAATGTGACAGTCCTGCAGAAGCTATCGCTGGCAGCCTGCACCAGATCTGCTCCAAGATTATGGCTGAACGGAAGAATGGCAAAGCGGCGGCGGGCGGCTCCTCCCTCCCCGGCTCCGACGTCCCGCTGCAAGTAGAGTTTCCCACACCAAAGACTGAACTACAACAGAGCTTCCACGTTCACTACCTGGGAGTGACTTCAGTGTCTCGCCCTATAGgcatGGACATTATAAATGGGGCGATCGACAGTCTGCTCTCGTCCACGGGGAAGGAGGACTGGACCGCAGTGCTGCTGAATGTGGAGGACGCTACGGTCAGCGTTATCAAGGAGAAGgaggaagaggaggaggaagtgcTGGTGGAGTGTCGTGTGCGTTTCCTGTCGTTTATGGGCGTGGGACGAGACATACACACTTTTGCCTTCATTATGGACACTGGGAACCAGCACTTCCAGTGTCACGTGTTCTGGTGTGAACCCAACGCAGGGACCGTGTCAGAAGCAGTGCAGTCTGCCTGCGTGctCCGGTACCAGAAATGCCTGGTGGCTCGCTCCCCCTCTCAGAAGGCAGGTTCCTCGTCTCCGCCCCCGCCGGACTCGGTCACGCGCCGCGTCACCACCAGCGTCAAACGCGGCGTCCAGTCCATCATAGACACTCTGAAAAAGAAGCCGTCCCCCGAACTGCCCAACCAATGACGGCGTAGCGCGGCCGAGCCGAGCCGGCGGGAGAACCTGTATATATACCAGTACCTCTGTACGGCCAGCGGGACGGACCTCacaacagataaacaaacaaacaaacagataaacaaataaacaaacacagagatcaAAGGAAGGAAGATCAGGAGCCCAGTGGGTGAAGCTCCACCGCTGACCATCGACCTCCGCCGTCTCAGCACGCTTCCTGAAGCATGCCCcggcctcacacacacacacacacacacacacacacacacacacactttaaggCGAGACACTGCAGACATTCGTTATATGGGCAAAATCGAAAAGAATCAGATTATAATAATCCAACTCAAAaaaatgtgtcatttttaaCCTGTCTTTATTCCCTGTTACGATTTCTGTTCtgaaaatatatgcaaattagctcatatttcattaaataatatattttatttgcatctaaacatctaaacaaaaAGTATCATTAAATTACAtgagaatttgttttatttcttttaatttgttCCTGGGCTCCCCCTTCAGTCAGGAATTAGAAATTGAACTGCAgttgtaatactgtatattgagaCTCCACTACAGGACACGCTGTGCACATGCTttcctggacaagctgagagattaaaggagtgagtgaataaaagtgagaaaaagcatgtggactgagacGGTAGAGTAAGATAACAGGATTTTACACTTATATTATGCAGTGTTACACAGTTGTGGAGAGtggagttacatagtgcagtagcaGCGTTTTTGACCCTTATTGCAGTCAATAGAGCATCACACTCATtttgattttcatttttgttttaaggACAAAATGTTACACTAAATAGCTCTATCCAGGAAGGATTCATTTCTCAGGGgattctggggtaattttctcccTTTTAtggggtttttatcctctgtgattttattcccgtccagaacgatcatgtaggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20615 lncRNA downstream 11913 33013370 ~ 33023936 (-) True G15300
TU20620 lncRNA downstream 16286 33019112 ~ 33019563 (-) False G15303
TU20618 lncRNA downstream 17297 33016265 ~ 33018552 (-) True G15302
TU20587 lncRNA downstream 52489 32982490 ~ 32983360 (-) False G15289
TU20586 lncRNA downstream 62392 32971537 ~ 32973457 (-) True G15289
TU20642 lncRNA upstream 56587 33129968 ~ 33130342 (-) True G15319
TU20657 lncRNA upstream 143027 33216408 ~ 33216763 (-) True G15329
TU20658 lncRNA upstream 145818 33219199 ~ 33219418 (-) True G15330
TU20682 lncRNA upstream 225281 33298662 ~ 33299321 (-) True G15343
TU20702 lncRNA upstream 427385 33500766 ~ 33501000 (-) True G15363
XM_007260314.2 mRNA downstream 76009 32956131 ~ 32959840 (-) True LOC103028197
XM_022676517.1 mRNA downstream 92256 32921025 ~ 32943593 (-) True LOC103029347
XM_007260318.3 mRNA downstream 170512 32860683 ~ 32865337 (-) True LOC103029668
XM_022676502.1 mRNA downstream 177554 32834496 ~ 32858295 (-) False LOC103039156
XM_022676496.1 mRNA downstream 177554 32834496 ~ 32858295 (-) True LOC103039156
XM_022676596.1 mRNA upstream 1752 33075133 ~ 33084176 (-) False kiaa0141
XM_022676592.1 mRNA upstream 1752 33075133 ~ 33084176 (-) True kiaa0141
XM_007260311.3 mRNA upstream 19484 33092865 ~ 33101606 (-) True nudt6
XM_007260309.3 mRNA upstream 227852 33301233 ~ 33348173 (-) True ankrd50
XM_022676679.1 mRNA upstream 825477 33898858 ~ 33909077 (-) True LOC103022214
TU20525 other downstream 215080 32814074 ~ 32820769 (-) False hopx
TU20526 other downstream 216678 32814074 ~ 32819171 (-) False hopx
TU20527 other downstream 216678 32814074 ~ 32819171 (-) False hopx
TU20269 other downstream 875971 32142728 ~ 32159878 (-) False nfkb1
TU19927 other downstream 1980346 31053764 ~ 31055503 (-) True G14839
TU20934 other upstream 1061211 34134592 ~ 34136732 (-) True G15497
TU20928 other upstream 1088742 34162123 ~ 34162958 (-) False evc2
TU20930 other upstream 1088742 34162123 ~ 34162958 (-) False evc2
TU20938 other upstream 1167945 34241326 ~ 34242318 (-) True G15498

Expression Profile