RNA id: XM_022676715.1


Basic Information

Item Value
RNA id XM_022676715.1
length 1306
RNA type mRNA
GC content 0.49
exon number 9
gene id lyar
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34071903 ~ 34078289 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AACCCGGAGTGTAAACACGGGCGCGCGCGGGTGCGTCGCTACGCGGCGTGGTTTACAGAGGAGACCCGGGTTTATCTGAACGGAGAAAAAAAtcagttattattaatattattattaatatttacccGCGCGCTCAGGGGGAGGAgtcgacagagagagagagaggatgGTGTTTTTTACCTGTAACTCGTGTGGGGAGTCTCTGAAGAAAGCGCAGATAGAGAAGCATGTGGGGATGTGCAGAGGAAGCTCCTGTTTTTCCTGCATCGACTGTGGAAAAGATTTCTGGGGGGAGGAGTATAAGAATCACCTGCGCTGCATCAGCGAGGATCAGAAGTACGGGGGGCGGGGCTACGAGGCCAAAGCCAATAAGGGAGATgtgaagcagcagcagtggatTCAGAGGATACAGGAGGCTCTGAGTAAACCCGGCGTCAGCGTCCGACTCAAAGACCTTCTCAATCAAATCTGTTCCTACGACAACGTTCCCCGAAAAAAAGCCAAGTTCCAGAACTGGATCAAGTGCAGCCTGAAGATCCACGACCTGAACCTGCAGAACCAGGTGTGGGAGATCATCTCTGCTGCAGAGAGCAGtAAACCCAACGGAACCCAGCGTCCAGAACCCAAACCAgaccctcctcttcctcagcagcagcagctccagacggaggaagaggaggagaaacccagagagaaaaagaagaacaagagagagagaaaagaggagagacagaaaaagaacaagaacaagaagaacGGAGAGAACACCACCGACGAACagaagataaagaagaagaaaaagaggaagagagatgctgaggaggaggaagaggggcaggatgaagaggaggagccAACAGTTAAaccaaagaagaagaaaggggAGGAGCCAGGTAAAGTAGAAAATCTGGAGGATTTAGCGGATCAGCAGGAGGATCAGCAGGAGGATCAGCAGGAGGATCAGTCCGGTTCTAAAGGAAAGTTTAACTGGAAGGGGACGATAAAGGCGGTGCTGAGGGAGGGGCCGGATGAAGGCCTGTCTGTCAAAAAGCTCCGCAAGAAGgtgctGGCGGCGTATTACTCGTTCAGTGGAGAGGGGAACTACAGGTCGGAGGAGGAGCTGTACTCTGTGTTTAACAGGAAGTTAAATGGACCCAAGTTTAAGGTTCTGAAGGATAAAGTGAAGCTGGTAAAGTGACCCGGATTTACCAGAACCAGAATcacaaccagaaccagaactgtTCAGATCTGTTTCTTTTAATGTACAAAATTCAGCTTTTCTTACAATAAACATCCTCAAAACAAA

Function

GO: NA

KEGG:

id description
K15263 LYER; cell growth-regulating nucleolar protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20916 lncRNA downstream 29544 34041722 ~ 34042359 (-) True G15486
TU20871 lncRNA downstream 147895 33923606 ~ 33924008 (-) True G15454
TU20869 lncRNA downstream 180800 33833697 ~ 33891103 (-) True G15452
TU20866 lncRNA downstream 183815 33883746 ~ 33888088 (-) True G15451
TU20868 lncRNA downstream 187416 33828403 ~ 33884487 (-) False G15451
XR_002650849.1 lncRNA upstream 56297 34134586 ~ 34136689 (-) True LOC111194046
TU20950 lncRNA upstream 79038 34157327 ~ 34158162 (-) True G15509
TU20951 lncRNA upstream 89253 34167542 ~ 34167902 (-) True G15510
TU20953 lncRNA upstream 95911 34174200 ~ 34175378 (-) False G15512
TU20954 lncRNA upstream 95911 34174200 ~ 34175378 (-) True G15512
XM_007240686.2 mRNA downstream 6855 34057798 ~ 34065048 (-) True tmem128
XM_007240685.3 mRNA downstream 16331 34044511 ~ 34055572 (-) True otop1
XM_022676714.1 mRNA downstream 30789 34039409 ~ 34041114 (-) True LOC103031787
XM_022676679.1 mRNA downstream 162826 33898858 ~ 33909077 (-) True LOC103022214
XM_007260296.3 mRNA downstream 164834 33898858 ~ 33907069 (-) False LOC103022214
XM_007240688.3 mRNA upstream 12345 34090634 ~ 34103374 (-) True stx18
XM_022676762.1 mRNA upstream 56297 34134586 ~ 34136572 (-) True cytl1
XM_022676967.1 mRNA upstream 73534 34151823 ~ 34172017 (-) True evc2
XM_022676826.1 mRNA upstream 107339 34185628 ~ 34190394 (-) False LOC103038859
XM_022676821.1 mRNA upstream 107339 34185628 ~ 34190394 (-) True LOC103038859
TU20525 other downstream 1251134 32814074 ~ 32820769 (-) False hopx
TU20526 other downstream 1252732 32814074 ~ 32819171 (-) False hopx
TU20527 other downstream 1252732 32814074 ~ 32819171 (-) False hopx
TU20269 other downstream 1912025 32142728 ~ 32159878 (-) False nfkb1
TU19927 other downstream 3016400 31053764 ~ 31055503 (-) True G14839
TU20934 other upstream 56303 34134592 ~ 34136732 (-) True G15497
TU20928 other upstream 83834 34162123 ~ 34162958 (-) False evc2
TU20930 other upstream 83834 34162123 ~ 34162958 (-) False evc2
TU20938 other upstream 163037 34241326 ~ 34242318 (-) True G15498

Expression Profile