RNA id: XM_022676826.1


Basic Information

Item Value
RNA id XM_022676826.1
length 2522
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC103038859
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34185628 ~ 34190394 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGCTTCTTAAACCTGGAGAACTGGGAGAGAAACCCCTGAAGCTCTTCCAGCAGATCACATCACATTAGATCACAGCAGAGGGTTTTGATTGATGTCTGGCTTTGTCGACTACTGGAGACATTCTACTGATAATTGGTCCAAATTATTGACTAAATATGCCGAGCGATGTCCTTATCACTAGAGGAGCTGTGTGCCATGGTGAATGTGTCCTTTGAGGAGGTGAAAAATTTACACATGAATGGAGATCGTAGATCCAGCGGGAGACTGCAGGACAGCCCAGGCAGTGCTGAACATTTGCCAGAGGATTTCAGTCCACGTGAACATCTCTGTACACCAGAACACCTGAACAGGTGTATATTAGAAGCAGGAGTTGGCGGCAGTGTATCCGAGGAGGATGACACTCATCATGCAAAAAGGAAAAAGGGTCCAGAAAACTGGAAACGCAACATCCAGAAACGAAGGCGAATGGAAGGGAAATCCTACAGCGGAAAACAGAAAGATGTGGGCAAAGTGACCAGAGCAGCACGCATCATGGGCCCGGGCTGTGCGTCAGACGCGTGCAGGAAGTCTGCTAAACGATTCTGCCACACTTTCAGTGAAGAGGATAGGCAGAACATTTTCCAGAACTTCTGGCAGAGGATGAACTGGGAGGAGAGAAGGTCCTATGTGGCGGAGCTTGTTGACCATACTCCAGTGGCCAGGAAGAGGTCCGCAAGTCAAGACTCGAGGCGGTTATCGACGCTCTCATACCATCTTATTCTAGACGGCGAGAAAAAGAGGGTGTGCAAAAAATTATTTCTGGCCACTCTGGGTCTGGGGGAGTGGTCAGTGGCGCACTGGGTGCAGGTAAATGAACTGGAGAAGaacagcagtgaaactgtggtTGGTGAAGAAGCTCTGGCATCTCTCCAGGCCTTTCTTAGGAACTTGCCAAAACTGTCCCCCCATTTTGTCCAGCCTTCGTCCTCCAAGGTACATCTGGAGCCCATGTTCCAGTCCATGTCTGACTTACACAGAGTTTACCAGCGTTACTGCGAGGAACAACTCCACACAACCCCTCTGTCTAGAAAAGTGCTAATGGACGAGTTTAACCAACTCAATCTGGCCTTATACCGCCCGGAGGAAGACGCCTGTAGCTCTGAGGAGCGGCAGATTGACTGCTGGATAAAAGAGGAGGTTTGTGAGGAGAAAGCAGGAGAAGCTCTGGACAGAGAGAAGCTCATATTGTCCTGTATGGATCTGCAGGCTATGATCCTCTGCTCAGAGCTGAACACTTCTTCCTTGTATTACAAGACTAAGCTGGCAGTGCACAACCTCGCCCTCTACCACACGGCTAACCACGGCAGCGCCCGCTCTGTGTGGGCTGAAGGAGAGGGAGGGCAGACTGTGAATAAATTTACCTCCAGGATTACAGATTGCTTTCAACAGCAAGAGCAGAACGATGATGATGAATAATTATAGGTTTTATTAATGTTCCACAGTTCATGATTTTGTTTTGTGATAGCTTCAGTCCAAAAACAAAAGACCCAAAAGAACCCACCCCATGGTCATTCAAACAGACCCACAGTTTGTGCAGTTGTTTAAGAACCTCTGTCTTCAGGAGGATGTAGGTTAAACCTGCAGTGATGTCTCTGCACACTATCCTCTCTATCTCTGGGTGGAGCTTCAACACATCTCAGAGGACGACCGTTCTAGCTGTCAGCTTCTCTCATGGGTGGGAAATGGTAATAACTATGATAGGAAAGTAAACAGTACATTTACAATCCTTTACAAGTAAGCAGAATGTTTCTGTTACTGTGCCTTTATTAGTGATGTATGTACACGAACTCTGTTCTGATAAAAACACTTGCCGGAAGAATTCTTAAACTGGGAAATGAAGAaaactaattaattattattaaaacatactaacagcTAATATTTGTTCATCGTGTCGATCACACAGTCTTAAAATtgtgtatttactgtttttagtttacatgtaaTGTTAAAGACCTACAGTAAAAACATACTGTGATTAGAGACGAAACGATCGATTGGctttcagtgtgtttgtgtgttttttaatcacattggACTCAGACTCACTATTTGTAGAGTGTGTAAAAGATCCAGCCCAGACTTCCATCGGtatctgtgattggctgatcatACTGAAAAGAGTGATCAGAGTAGTTGTGCCGTCTTTAGCAGTATCGGCTCGTACAGGATCTGAATCTGATCTAAATCCGTTTAACTCCCAAAACCTGGGGGGCCCATGTGGGGGCCCATGTGAATCCGATTGGCATAAAGAACCGAATttgtagtaaaaaatatttccacAAAAGGCAGATTTAGCAGCTAAATATTCTCCACAGGGGGTGCTGTTATTACTTCAGTGCAGTCATGCTGTGTGTCTTTGTTTTAGGAACTTGTGGACTCTGTACAGATTTTCACTTTTCCACTCCTAAATCTAAACGCCTTCTGATCAAGGCTTTGTTTGGATGCTCACAGTACATTAAAGATCTGTGTTAATCCCACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20958 lncRNA downstream 7061 34177201 ~ 34178567 (-) False G15513
TU20959 lncRNA downstream 7334 34177201 ~ 34178294 (-) True G15513
TU20953 lncRNA downstream 10250 34174200 ~ 34175378 (-) False G15512
TU20954 lncRNA downstream 10250 34174200 ~ 34175378 (-) True G15512
TU20956 lncRNA downstream 10250 34174200 ~ 34175378 (-) False G15512
TU20963 lncRNA upstream 4381 34194775 ~ 34195228 (-) True G15516
TU20944 lncRNA upstream 10614 34201008 ~ 34253713 (-) True G15503
TU20940 lncRNA upstream 13136 34203530 ~ 34243927 (-) True G15499
TU20972 lncRNA upstream 22469 34212863 ~ 34215296 (-) True G15519
TU20976 lncRNA upstream 43235 34233629 ~ 34234463 (-) True G15523
XM_022676967.1 mRNA downstream 13611 34151823 ~ 34172017 (-) True evc2
XM_022676762.1 mRNA downstream 49056 34134586 ~ 34136572 (-) True cytl1
XM_007240688.3 mRNA downstream 82254 34090634 ~ 34103374 (-) True stx18
XM_022676715.1 mRNA downstream 107339 34071903 ~ 34078289 (-) True lyar
XM_022676718.1 mRNA downstream 107347 34071903 ~ 34078281 (-) False lyar
XM_022676864.1 mRNA upstream 753 34191147 ~ 34198885 (-) True crmp1
XM_022676851.1 mRNA upstream 23370 34213764 ~ 34216327 (-) True LOC103041332
XM_022676810.1 mRNA upstream 29549 34219943 ~ 34228034 (-) True mcm7
TU20928 other downstream 22670 34162123 ~ 34162958 (-) False evc2
TU20930 other downstream 22670 34162123 ~ 34162958 (-) False evc2
TU20934 other downstream 48896 34134592 ~ 34136732 (-) True G15497
TU20525 other downstream 1364859 32814074 ~ 32820769 (-) False hopx
TU20526 other downstream 1366457 32814074 ~ 32819171 (-) False hopx
TU20938 other upstream 50932 34241326 ~ 34242318 (-) True G15498

Expression Profile