RNA id: XM_022676851.1


Basic Information

Item Value
RNA id XM_022676851.1
length 1233
RNA type mRNA
GC content 0.55
exon number 5
gene id LOC103041332
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 34213764 ~ 34216327 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GATCAGAGCGGAGCTGAGGGAGCAGagTCATGATGCTGGTAAAATtgctgtgtgtgctgtgctgctTTGCTCTGCAGCCCTGGCAGCTGGAGGCAAAATCTCTTCTAAACGTGATCAAACAGGAAGacgTGGCTCCAGTCAGTATAGACGCTGAGAAGGCTAATGGTTTCCTGTCGGGCTCTAGGGGGCGCCGCAGTGTGGACCCCCGCTGGCATCGCCAGACTCCAGACTTCCAGGCTTATTATCGTTACTACAGCAGCATCGGACACACGGAGGGGCTTTACGAGATCGACCGGATCCGGATGATCTACCAGCAGATGCGTCACCTGGAGCAGGTCCACGGTCCAAACGCCGCGTACTACCAGAGCAAGCTGGGTGTTCCCGTCCTGCCCCCACTGCCCAAATGTGACCCGGCCAAAGACAAGAATTGTAAAAtgcccccccctcccccccctgaGGCACCCGCCCCAATTAAAGGCCACGCCCCCCCAGCCATGTCCCAGGCTGACGTTGTTTACCTGTGCAACGCTAAAGACCCCCTCTGCAAACCGCACATCGTATACATGCCCACAGGGGCCGTTCCTGTGCTGTGCGACCCGCGCTACCACCCCACCTGCAAACTCGAGGGACCACCACCCCCCGCCCCACCCAAGAAGGTAGCCCTGCCTCCTAAGGTAGCCCCGCCTCCAGCACCAATAATGTACAAAGGAATGGAGTATGACTGCGACCCTTACTGGGACCCCGACTGCCTGATTGATAACCCTCCCCGTCTCATCAAAGGCAAGCTGGCCCCTCCCCCTCCacctgaggaagaggaggaggaggtggagtcGACTCCGGCCCCGCCTCCCCCGCCTCTCCCGATTGCTAAGAAACACCCAGTCCCGTACTACGGTTACCCGTACTACCCGTACTACACCCCCAACTACCAGTCAGAGCTGTATGACGCTCACCGCTACGCCTACCCCTCCCCCAACACCGACAAATAAACACCACAAATACACAACACCGACCAATACACAACACCAACCAATATACAACACCGACAAATAAACACCCACAAATACACAACACCGACCAATAAACACCCACAAATACACAACACTGACCAATACACAACACCGACCAATACACAACACCGACAAATAAACACCCAGAGTGAGTAAATCTCTCACACAACAGTGTAAATCAGTgaattaaagtgtaaaataaagaaGTGTTGAATAAAATCTG

Function

GO:

id name namespace
GO:0048736 appendage development biological_process
GO:0033333 fin development biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU20963 lncRNA downstream 18536 34194775 ~ 34195228 (-) True G15516
TU20958 lncRNA downstream 35197 34177201 ~ 34178567 (-) False G15513
TU20959 lncRNA downstream 35470 34177201 ~ 34178294 (-) True G15513
TU20953 lncRNA downstream 38386 34174200 ~ 34175378 (-) False G15512
TU20954 lncRNA downstream 38386 34174200 ~ 34175378 (-) True G15512
TU20976 lncRNA upstream 17302 34233629 ~ 34234463 (-) True G15523
XM_022676864.1 mRNA downstream 14879 34191147 ~ 34198885 (-) True crmp1
XM_022676826.1 mRNA downstream 23370 34185628 ~ 34190394 (-) False LOC103038859
XM_022676821.1 mRNA downstream 23370 34185628 ~ 34190394 (-) True LOC103038859
XM_022676832.1 mRNA downstream 24377 34185628 ~ 34189387 (-) False LOC103038859
XM_022676839.1 mRNA downstream 24984 34185628 ~ 34188780 (-) False LOC103038859
XM_022676810.1 mRNA upstream 3616 34219943 ~ 34228034 (-) True mcm7
TU20928 other downstream 50806 34162123 ~ 34162958 (-) False evc2
TU20930 other downstream 50806 34162123 ~ 34162958 (-) False evc2
TU20934 other downstream 77032 34134592 ~ 34136732 (-) True G15497
TU20526 other downstream 1394593 32814074 ~ 32819171 (-) False hopx
TU20938 other upstream 24999 34241326 ~ 34242318 (-) True G15498

Expression Profile