RNA id: XM_022677145.1


Basic Information

Item Value
RNA id XM_022677145.1
length 3503
RNA type mRNA
GC content 0.49
exon number 17
gene id aldh16a1
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 15722985 ~ 15738813 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTCTGAGATTAAACCCCAGTAAGAGGGAGAAGAAGCTGTGAGGGAGGAGTTTATGAATGACAGCAGAGAGGACTGCATGCTGCTCAACACTGAAGACCAGCTACTTTCTTCAACTTTCTTTCTGAAGCTGCTGGTTctggtttttttttcactaattaGCTAACGCTACCTATTTAGCTTATTAGTTTAACTACCTTTATCAGGGGGATATTTTTAATTCTCTCTTATAACTGAAAGCATTTTCACAGCCTTCACAGCTGCCAGGTAGCTTAACCTAGCAAAGTAAACCAGTTTAGCCCAGAGAGGATCTTATATAGGACGTTTAACTGCGGGTTGAGCTGAATAACTCTGGCTTACCTAAACTCGTGTTATGGCAAGTAGCACCTCGAACACTGTGTACGACATTTTTCAGTCTATGGATTCCGGAGCGCCCagttccagcactgctgctgctgcccggGCTTGGCTCGAGCAGCATTCTCAGTCTCTGGGTCTCTTCGCCAATGGGAAGTTTGTGTGTCCGGTCGGCAGACGGACACATGCTGTGACTGATTCCAAAGGTGGAACTGTCTGCAGTCTGGTCTGTGCTGAGGATGAAGATATCTCATCTTGTGCTTCCTCTGCAGCTGCAGGTTTTAAAGCCTGGGGTGAACTGAGTGGCCATCGTAGAGCTAAAGTCCTGctcagGTTGGCGAGCACTCTGCAGAGATACACTCAGTGTGTGAGTGAACTGTGTGATCTGTGCCAGTCTCCCTGCCCCCCCTCGGCTCTGGTCAGACTGGCCCAGTACTATGCTGGCTGGGCTCAACTACGAGACACACTCATGCCTGAGTGGACCCCAcgagGTGTGATTGCAGTGGTTGTTTCTGAGGACTGCTCTTTCTACTCTATATGGATTAAGGTCTTTCCAGCTCTGGCTAtggGCAATGCTGTAATTGTggttcctggtgcaaaactggCACCTCCTGCACTCTTATTGGCTCAGCTGTTTATGGAGGCGGGACTTCCTGCTGGAGCGCTTAGTGTGGTGACGGGTGACGGCTCGGTGGGAGCCAAAGTCGCTCAGAACAACCAGATAAGCTACCTGACCTACAGCGGGAGCCAAcagGATGGAGAGGTGTTTTCGAAACAGACAGCTGGTTGGGGTCTCccgctctctgtctgtctgtccgtcagTGCCATGTGTCCTTTCATCATCTTTGAGTCTGCAGATCTTGACAGCGCTGTGGATGCAGTGATAGAGGCAGCTTTCAAAAAGAATAAAGATtggcAGTGGGTGCTGTTTGTTCAGGAGTCTGTGTTGGACAGTGTTTCTGCCAGGCTGAAGGTGAGAATGGCTGGGCTGAAGTGTGTCTCACTGCCCTGTGAGTCGGACAGGAGCCGGGTGGACGCTGCAGTGCAGGAGGCTGTTCAGCAGGGGGCGACACTGATCCAGTCCAGTTCTCCACCTGCTTCTGGTGCTCTGTACCCACCAACAGCTCTGTGTGGTTTGGCCCCGCCCTCCTCTGCAGCTGTCTCCCCTCCGCCTGGACCACTGCTTCCCATTCTGTCCTTCAGGAGCGCTGCTGAGGGAGCTGCTCTGAgtaACCGCACTCCTCATGGTCAGGCTGCCTCCATCTGGACTGAAGATCTGACCTTGGCTTTGGAGACTGCTAAAAGtctgtgtgtagGCTCAGTGTGGGTAAACAGTCACTCAGTTACAGATCCCTCGTTCCCTCAGTGTGGACGGAGAGACAGTGGGAACTGCACTGATGGAGGCAGAGAGGGTCTGTATCAGTACCTGCGCCCGTCTGTCTCGCCCTCACTAACTCGCTCCACTCCTGCTTCTCTGGACTACGCCACATTCGGCACTGCAGCATCTAAGTTCATGGTCCCTGAGGGCTTTGATCCATCCAGTGTCCCTCGCTCTTGTTTTCAGTATGTGGGTGGGAAGCTGTGTAAGGCTGATTCTGGCAGCAGTCGGACAGTGCAGTCTCCAGGTGGCGCTGTGTTGGCCCACTGTCCAGATGGAGGCAGAAAAGACGTCCGTAACGCTGTTGAGGCAGCTCTAAAAGTCCAGCCAGGGTGGATGAAGAAGAGCCCAGCTGCTAGAGCTCTGTCCCTCTACTCCCTCTCGGACaatctggaaaaaagaaaactggaCATGGCTACGTCAATCCATGCTCAGACTGGCATCTCTATAGAGGAGGCTGAGAAGGAGGTGGAGATTAGCATCACCAGGCTTTCTGACTGGGCTGCGAGATGTGACAAACAAACTGGAGGAATGCTGCTGCTTCCGCAGACAGGCTCTGCTCTCTCCGCCCCAGAAGCTTTAGGAGTTGTGGGTGTTGTGCTTCCAGACACTAAGCCTCTGCTCTCACTGGTGTCTCTGCTGGGGGCTGCAGTCTCTGTGGGTAATGCCGTCATCATGGTGCCAAGTGAGAAACACCCTCTACCAGCGCTTGATTTCATTCAGGTTCTTCAGGCCTCAGATATTCCTGCTGGTCTTGTTAGTGTTATCACTGGTGGAAGGAATCAGCTAACCCATGCATTGGCCAATCACAGTGAGATTCATGCAGTATGGTACTGGGGCAGTATGGAGGGGTGTCAGTTTCTTCAGCACACCTGCTGCAGTCCTCTGAAGCATCTGTGGCTTCACTGTGAGGAAGAGAAGGCCAAAGATGGAGGAAAGTACTGGAGCCACCCGAGTCCCTCGGTACAAGAGGAGATGTGGAGAGAGGCAGTGGTGTGGAAGAGTGTGTGGATCCCcactgcttagcaacactgCTACTGTAAGAGTACTGCTACAtatgagatggagagagagcgcaagacaaaaagaaagagagagagaacgaaatAGAAAAGGAGAATATATAAGTAATAAAACGTGTAGTATAGTATTGAGAATTGAGAATAGTAAAATCTTGGCCTATCACAATAACTTGTTAATTTTTTGGGGAGAACATATTTTGTTCCAgatataaatatctatattattgtcattttaatacGATTCTGTGTCAATGGTATGATTATAATATAGcagcataataatgcagttgCTCCCTTTTAACTAGAATATTAATTCAGccattgaaaaaaatgtttatcttcaaagaataaaacaaaagaatctACATATAGTCTTTGCAAACAGACATACAACATACTGACTCATTTACTCTAATGGGTTCTCCTAACCAAATAATGTGTACGATAAGTTGATacttattgtaattattgtgatagGCCTAGTGAAAGCAGTGTCATAGTTATAAtattagattttattaattGCCATTTACCGTCCAGATTAAGAAGGATCTTCACATGCTTAAATCTGTTAATACGTGAGGGAGTGAAGGGGTCAACCAAAACAGCAGTGCCAATTATGCTCTCAGCATGTATTTCAGCATCACCAGGGACTGAACAGGGAGTGATATTCTAAGGAATAGCTCAATACAGGTAGACAGCTGTGCCACCCATTGGCCCCAAGTTAGAGTATGGTTTTGAAGGAAAA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14823 lncRNA downstream 33780 15668875 ~ 15689205 (-) True G10962
TU14612 lncRNA downstream 443057 15279453 ~ 15279928 (-) True G10811
TU14578 lncRNA downstream 633857 15087871 ~ 15089128 (-) True LOC111194139
XR_002650946.1 lncRNA downstream 634305 15087871 ~ 15088680 (-) False LOC111194139
TU14554 lncRNA downstream 702870 15019291 ~ 15020115 (-) True G10782
TU14814 lncRNA upstream 19943 15758756 ~ 15768992 (-) True LOC103030038
TU14850 lncRNA upstream 151260 15890073 ~ 15890647 (-) True G10989
TU14858 lncRNA upstream 204544 15943357 ~ 15943893 (-) True G10996
TU14862 lncRNA upstream 212121 15950934 ~ 15951171 (-) True G11000
TU14852 lncRNA upstream 240424 15979237 ~ 15982555 (-) True strada
XM_015604340.2 mRNA downstream 9545 15711815 ~ 15713440 (-) True LOC103038450
XM_022677486.1 mRNA downstream 17178 15700494 ~ 15705807 (-) True LOC103044149
XM_007251090.3 mRNA downstream 39470 15681200 ~ 15683515 (-) True LOC103029096
XM_007251091.3 mRNA downstream 49364 15671756 ~ 15673621 (-) True LOC103029400
XM_007251086.3 mRNA downstream 57614 15649921 ~ 15665371 (-) False LOC103027827
XM_007251099.3 mRNA upstream 23534 15762347 ~ 15902432 (-) False LOC103030038
XM_022677188.1 mRNA upstream 32856 15771669 ~ 15902433 (-) False LOC103030038
XM_022677159.1 mRNA upstream 33514 15772327 ~ 15902433 (-) False LOC103030038
XM_022677182.1 mRNA upstream 33514 15772327 ~ 15902433 (-) False LOC103030038
XM_022677168.1 mRNA upstream 33514 15772327 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 436250 15285845 ~ 15286735 (-) False LOC111188178
TU14606 other downstream 444548 15272755 ~ 15278437 (-) True G10808
TU14530 other downstream 799026 14922965 ~ 14923959 (-) True G10767
TU14289 other downstream 1066457 14619396 ~ 14656528 (-) False hsd3b7
TU14251 other downstream 1479191 14241061 ~ 14243794 (-) True G10560
XR_002650886.1 other upstream 23534 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other upstream 23534 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other upstream 23534 15762347 ~ 15902432 (-) False LOC103030038
XR_454920.3 other upstream 584220 16323033 ~ 16353834 (-) False LOC103036671
TU15837 other upstream 3369900 19108713 ~ 19111572 (-) True G11719

Expression Profile