RNA id: XM_022677369.1


Basic Information

Item Value
RNA id XM_022677369.1
length 1684
RNA type mRNA
GC content 0.54
exon number 7
gene id dcaf7
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16275677 ~ 16285893 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AAGACATTTTCGATCAAAACCTCGAGCCGTCGTTTTTCAGCTGTGTGCTCCGCGGAAAGGCCCGGTGAGAGTTGGCggttatttactgatataaacGGTAATCCGCTGTTTTTGTTATGCGGGATATTTAGCGCTGTGTTCGAGATATAGAGAGACGCGGAGGGAGCGGGTCTGGCGGAGCGGAGCGGCGTCGTTTAGCTCGGCTGCTGCAGGAGAGCCGCGGGAGTGTTATGACATTCCCTTTGTCTGAATTAACGGGGCGTTTGGTCGTGTTTTGGTGGTAAACCCGTCGTGTCGCGCGTGTTCTGGGTTTATTTGGTCGTTAGGTTAGTCCGCTTTACTCGGTCGAGGTTCGCGTGGAGCGGAATAATCAGCCATGTCTCTGCACGGCAAGAGGAAAGAGATCTATAAATACGAGGCGCCATGGACCGTGTACGCGATGAACTGGAGCGTCAGACCCGACAAGCGCTTTCGGCTCGCGCTCGGCAGCTTCGTGGAGGAATACAACAACAAGGTGCAGCTGGTTGGCCTCGATGAGGAGAGCTCTGAGTTTGTGTGCAGGAACACGTTTGATCACCCCTATCCCACCACCAAGATCATGTGGATTCCTGACACTAAGGGGGTCTACCCAGACCTGCTGGCCACGAGTGGAGATTACCTGAGGATCTGGAGGGTGAATGACACAGAGACTCGTCTCGAATGCCTTctgaacaacaacaaaaattcAGACTTCTGCGCTCCTCTGACTTCTTTTGACTGGAATGAGGTCGACCCCAATCTTCTAGGCACTTCCAGTATCGACACCACCTGTACCATATGGGGTCTGGAGACAGGGCAGGTTCTGGGGAGGGTAAACCTGGTATCTGGTCATGTCAAGACCCAGCTCATCGCCCACGACAAAGAGGTGTACGACATTGCATTCAGTCGTGCGGGTGGAGGGCGAGACATGTTTGCGTCTGTTGGAGCAGACGGTTCAGTGCGTATGTTTGACCTCCGTCACCTGGagcacagcaccatcatctACGAAGACCCTCAACACCACCCGCTGCTCCGCCTCTGCTGGAACAAGCAGGACCCCAACTACCTGGCCACCATGGCCATGGATGGCATGGAGGTGGTCATTCTTGACGTACGTGTGCCCTGCACGCCGGTGGCTCGACTGAATAATCACCGTGCCTGTGTGAATGGCATCGCATGGGCCCCACACTCCTCTTGCCACATTTGTACTGCAGCGGACGATCACCAGGCACTCATCTGGGACATTCAGCAGATGCCGCGGGCCATCGAGGACCCCATCCTGGCGTACACGGCTGAGGGAGAAATCAACAACGTGCAGTGGGCGTCCACTCAGCCCGACTGGATCGCCATCTGCTATAACAACTGCTTGGAAATCCTGCGGGTTTAACAGCGAAGCTGATACTGGCCCTGATTCTTCACCAAACGAGAGCAGGGCTAGTGCCAGCgagagagatgaagaggaggaggaggagggagaagATAAtagaggagaaggagaagaagaagaagaagaagaagaagaaaatgatgAAGAGGGTGGAGGAGATGGggaaggagaagaagaggaaggaggGAGTGGCTGGTTTCTGTGCTGTTGTAGGGGTCTAGAGGTTGCTGGTGGGTTTGGGTAGGGTGAGTGAGTGATtagtgtgtatgcgtgtgtgtg

Function

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14947 lncRNA downstream 3528 16270600 ~ 16272149 (-) True G11065
TU14913 lncRNA downstream 50989 16169805 ~ 16224688 (-) True G11036
TU14914 lncRNA downstream 50989 16169805 ~ 16224688 (-) False G11036
TU14922 lncRNA downstream 130377 16145041 ~ 16145300 (-) True G11043
TU14890 lncRNA downstream 188944 16085618 ~ 16086733 (-) True G11017
TU14952 lncRNA upstream 1234 16287127 ~ 16290485 (-) True G11069
TU14961 lncRNA upstream 5067 16290960 ~ 16304539 (-) False G11070
TU14957 lncRNA upstream 16812 16302705 ~ 16304539 (-) True G11070
TU14958 lncRNA upstream 16812 16302705 ~ 16304539 (-) False G11070
TU14962 lncRNA upstream 21195 16307088 ~ 16312001 (-) False G11071
XM_007251106.3 mRNA downstream 270958 15981217 ~ 16004719 (-) False strada
XM_007251105.3 mRNA downstream 270958 15981217 ~ 16004719 (-) False strada
XM_022677318.1 mRNA downstream 270958 15981217 ~ 16004719 (-) False strada
XM_007251104.3 mRNA downstream 311201 15952844 ~ 15964476 (-) True snrnp70
XM_022677496.1 mRNA downstream 333133 15936522 ~ 15942544 (-) True LOC103032263
XM_007251116.3 mRNA upstream 35685 16321578 ~ 16353831 (-) True LOC103036671
XM_022677247.1 mRNA upstream 120058 16405951 ~ 16408493 (-) True fzd2
XM_022677441.1 mRNA upstream 142211 16428104 ~ 16437125 (-) True ccdc43
XM_007256387.3 mRNA upstream 407529 16693422 ~ 16763105 (-) True c1ql1
XM_022677672.1 mRNA upstream 780503 17066396 ~ 17068055 (-) False LOC111194193
XR_002650886.1 other downstream 373244 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other downstream 373244 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other downstream 373245 15762347 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 988942 15285845 ~ 15286735 (-) False LOC111188178
TU14606 other downstream 997240 15272755 ~ 15278437 (-) True G10808
XR_454920.3 other upstream 37140 16323033 ~ 16353834 (-) False LOC103036671
TU15837 other upstream 2822820 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 2953013 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 3500088 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 3712547 19998440 ~ 20082442 (-) True G11917

Expression Profile