RNA id: XM_022677441.1


Basic Information

Item Value
RNA id XM_022677441.1
length 2145
RNA type mRNA
GC content 0.43
exon number 5
gene id ccdc43
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 16428104 ~ 16437125 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GACCGCgctgctgtgttttttcttcaggCGCTCTGGGCGGCCGGCCGACTGTCGCTGTGAGGACCCCAGAGAGGCAGCATGGCGGCCCGGGCGGAGTTCGGCTCGTGGTTGGATTCTCGGCTGGACGCGCTGCAGGTGGACCGGGATGTTTACGGGACCTACATCTGCAgcctgctggaggaggaggagagcgaGGCCGAGCGCCTGGAGGTTCTGAGAGCCACCCTGTCCGCCGTGCTGGAGGAAGACACAATCGAAGACGTCTGTCAGCAGATATTAAACCAGTGGGCCGACTGCTCAGCTCGAGCCAAAGCTGCCAGCAGCCAAGCTGAAGATGAGGTTCAGGCCATCGCCAGTTTGATAGAGAAGCAGGCCCAGATTGTGGTGAAGCAGAAAGAAGTACCTGAGCTGgacaagaaaaggaaagaggCATTACTCGCTCAATACGCCAACGTCACAGACGAGGAAGATGAaggtgaagaagaggaggagttaGGAGCTGTGGGAATCCCCAGTGAGAAATCTCTCTTCAAGAACACCAACGTGGAGGACGTCCTGAACCGCCGCCGGCAGCAGCGGGAGCAGGCAAAGGAGGATTCgcataaaaagaaagagcagGACAAGATGCAGAGGGAGAAAGACAAGCTGTCTAAACAGGAGCGcaaggaaaaagagaagaaacgCACACAGAAGGGAGAGCGCAAGAGATAGGGGGCACCATTGGAATATGTTTTGGACTTGGTTACGTTCATCACTGAGAATGCACGGAAACAGTGGCACCTGTACGGACTGTTCTGGTGTAAGGTGTTGGCacccataatttttttttttcttttttttttttttttttaaatataaacatgaGTGACAAGATGTTGCTAATGAATCCAGGGCCTGGCTGACTAAACCATAACACACATACATCACCTCACCCCATTTCACACTTGTGTTTCCCTGCCCTAATAAAGGCTTAGATTGAGAAAATCCAGGGACTGGTTTAGGAAAGCATTctgaagaaataaacagaaaaacagactgGATCACAAGACAAACACCTATGTAGTATGTATTTACTGCTGAACTCAGTGTTTGAGTTGCAAACAAGTAACAGTGTCTTTACATGCACTTTACAATCTGATATCTGATACTGTCAAAAATCGGAGTTTGTCAGCAATCTATTCATTGTGTTTACATGAACTTGGGTAATTAGATAATGagaaaataatcagatttttgctttgcaGCCAGCCAATGAGATgtgtaaattatgtaaaatcCAAAGAGCACACcatgatcttttttttaacacatcaaGTCTAAATTTGTGCATAAATCAGTAAGAAAATTAAGTCTATTAATTTCCTGTTTCAGTTTTACTCTAAAAGAGTTTTGTTGCCATCCCCCAGGTGCTGTGTTAAATGCTGTTTGATCATTTTTTGCTACCAGGCTCCGTTTTCGCACATGCACCGactaaaaaaaagatacaaggATACTCTTTATCAGATTTCTTAAGTACTCTTAAGTAGATTTCTACAATACCAGTGTATCCTGTTTATATGACTACTTAAATGATCAGATAACGGCAGTAATCCGATTTtcaagtgcatgtaaacacactcactgttATGTTGCTGGGGTCTTCAGGACTAAAGCTGACGAACATTAGCAACTGCAACTAAACAAGGAATACGTAATGagtttttaaatcactgatCAGGTGAATAACTTTTAGCACATGAACTTTGTGCCACTTGCTTTATCTTATCTGGCATAGAGACCACTTTACACCTCACTGAATCATATGATTAGTATCTGGATTAGATTTGGTATCATGTTAAGATTTTAATCAGATGCATATACACAATAGTTGAGTTGgaaatctgaaatctgattaGTGTGTGGGCATATTGCACAGCAATTATTAATGGTGTTTTAGTTCTACTGGGAGAAGTTATGTTTGTCAGAAGCATTTACATTTGCAATAATGCGGCTCAAATGCATCTCCTCATAGAAACACATTTGAAAGTGGATTAAGCAATCAATTTTAAATGCCTCTTGggtgcacagtttttttttttctcgtccatataatcctgatactcaaaACACATTAAAGCAAAAAGGGCCCTAACATTTCAAACAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU14980 lncRNA downstream 7978 16418159 ~ 16420126 (-) True G11077
TU14989 lncRNA downstream 57911 16367214 ~ 16370193 (-) True G11084
TU14966 lncRNA downstream 116217 16308912 ~ 16311887 (-) False G11071
TU15001 lncRNA upstream 46444 16483569 ~ 16483886 (-) True G11094
TU15007 lncRNA upstream 52900 16490025 ~ 16490226 (-) True G11100
TU15009 lncRNA upstream 53643 16490768 ~ 16491104 (-) True G11102
TU15015 lncRNA upstream 123999 16561124 ~ 16561363 (-) True G11108
TU15023 lncRNA upstream 167913 16605038 ~ 16618039 (-) True G11116
XM_022677247.1 mRNA downstream 19611 16405951 ~ 16408493 (-) True fzd2
XM_007251116.3 mRNA downstream 74273 16321578 ~ 16353831 (-) True LOC103036671
XM_022677369.1 mRNA downstream 142211 16275677 ~ 16285893 (-) False dcaf7
XM_022677363.1 mRNA downstream 142211 16275677 ~ 16285893 (-) True dcaf7
XM_007251105.3 mRNA downstream 423385 15981217 ~ 16004719 (-) False strada
XM_007256387.3 mRNA upstream 256297 16693422 ~ 16763105 (-) True c1ql1
XM_022677672.1 mRNA upstream 629271 17066396 ~ 17068055 (-) False LOC111194193
XM_022677670.1 mRNA upstream 629271 17066396 ~ 17068050 (-) True LOC111194193
XM_015601224.2 mRNA upstream 800249 17237374 ~ 17512950 (-) True LOC103042512
XM_022677868.1 mRNA upstream 1657914 18095039 ~ 18096516 (-) True LOC111194274
XR_454920.3 other downstream 74270 16323033 ~ 16353834 (-) False LOC103036671
XR_002650886.1 other downstream 525671 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other downstream 525671 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other downstream 525672 15762347 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 1141369 15285845 ~ 15286735 (-) False LOC111188178
TU15837 other upstream 2671588 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 2801781 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 3348856 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 3561315 19998440 ~ 20082442 (-) True G11917
trnak-cuu other upstream 4537957 20975082 ~ 20975154 (-) True trnak-cuu

Expression Profile