RNA id: XM_022677672.1


Basic Information

Item Value
RNA id XM_022677672.1
length 1115
RNA type mRNA
GC content 0.52
exon number 2
gene id LOC111194193
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 17066396 ~ 17068055 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TTCAGTCAAATACAGAAGTATAAAGACCTGAGAGACCGAGCCGTAACATTCCTAACAATCatatcactaaaataaaggGGTACAGGGCCACgaagatgtttaaaaatagcACTAATACCTTAAAATTAACAGGTAACCAGTGGAATTAGTGGcactagctagcttgctagcctGGTGGTCACCATGGTTACTGCAGAAGAGATTCCACTGACATCACAGTTGTGACATCACGCACCTGAGCATATACAAGCAGGAGTTCCGTCAGCTGGAGTTCAGGCTAGAGCTGGGAGACGCAGTATCAGGACTTCGGAGGGAATCTTGCAGTTACTGAGGACGAGCAGCTTTAGCAGAATGTCTTTACTGAACTCGGTAAAGACGGCGGTTCAGCAGCCAGTGAAGATCAACCGGCAGAGCTGGGAGAACTTCCAGCACGGGAAGACCAACCGCCCCAGCAGGAGAGAGAAACGTCCCCACGGGTTAATGGACGCACATGAGGACGCTCCTGCACTGAAACAGGCCAGGCTCCAGCTGGAGAGAGcTCCTCCCACGGTATGGATCATAGGGGACAGCTATATTCGCCGCGGGGAGGAGATGGCGAGGAGCTCACTGGGAGGTGACCTGGGAGTGCAGGCCGAGATCAGCTGGTTCGGCTGGGGAGGACTGAGGTGGCGAGGACTTGTTCCGTTCTTTAACCAATCTCTACGAGGAAGAACGGCTCCGGACGTGCTGATCATCCACTGTGGGGGGAACGATCTTGGAGGGATGAACGCTGTTCATCTCAGCGCACAGATGAAGGTGGATCTGCTTGATCTCCACCGTCGTTTCCCACACATGACGATCATGCTGTCGGATATCACCCCAAGACGTCAGTGGAGGTCCACCATTCACCCCAAGAGGATCGACGCGGCCCGGAAATGGGTAAACCGCGAGATGGCCGATTTCATCTTGGGAGTGGAGGGGGGTGTTATTCATCACCCGGATATCCTGTTCCACAACCCCCGACTCTTCCTCAGAGACCAGGTTCACCTGTCTCCTTCCGGCAATGagctgtttttaaatgacattGCAGAATCTCTGAAAACCTTCATCTAATAAAAGTGATTCTGCTGAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15105 lncRNA downstream 12756 17052636 ~ 17053640 (-) True G11179
TU15086 lncRNA downstream 176898 16889047 ~ 16889498 (-) True G11162
TU15079 lncRNA downstream 201614 16864328 ~ 16864782 (-) True G11157
TU15077 lncRNA downstream 223392 16842718 ~ 16843004 (-) True G11155
TU15070 lncRNA downstream 226158 16833241 ~ 16840238 (-) True G11152
TU15173 lncRNA upstream 224607 17292662 ~ 17298585 (-) True G11238
TU15184 lncRNA upstream 428420 17496475 ~ 17501571 (-) True G11249
TU15192 lncRNA upstream 463979 17532034 ~ 17532269 (-) True G11256
TU15194 lncRNA upstream 511835 17579890 ~ 17580168 (-) True G11258
TU15213 lncRNA upstream 561623 17629678 ~ 17630170 (-) True G11276
XM_007256387.3 mRNA downstream 303291 16693422 ~ 16763105 (-) True c1ql1
XM_022677441.1 mRNA downstream 629271 16428104 ~ 16437125 (-) True ccdc43
XM_022677247.1 mRNA downstream 657903 16405951 ~ 16408493 (-) True fzd2
XM_007251116.3 mRNA downstream 712565 16321578 ~ 16353831 (-) True LOC103036671
XM_022677369.1 mRNA downstream 780503 16275677 ~ 16285893 (-) False dcaf7
XM_015601224.2 mRNA upstream 169319 17237374 ~ 17512950 (-) True LOC103042512
XM_022677868.1 mRNA upstream 1026984 18095039 ~ 18096516 (-) True LOC111194274
XM_022677680.1 mRNA upstream 1158049 18226104 ~ 18229347 (-) True LOC111194212
XM_007231019.3 mRNA upstream 1169257 18237312 ~ 18238566 (-) True mos
XM_007231022.2 mRNA upstream 1198338 18266393 ~ 18274248 (-) True mrpl28
XR_454920.3 other downstream 712562 16323033 ~ 16353834 (-) False LOC103036671
XR_002650886.1 other downstream 1163963 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other downstream 1163963 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other downstream 1163964 15762347 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 1779661 15285845 ~ 15286735 (-) False LOC111188178
TU15837 other upstream 2040658 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 2170851 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 2717926 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 2930385 19998440 ~ 20082442 (-) True G11917
trnak-cuu other upstream 3907027 20975082 ~ 20975154 (-) True trnak-cuu

Expression Profile