RNA id: XM_022677708.1


Basic Information

Item Value
RNA id XM_022677708.1
length 1309
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC111194234
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22309352 ~ 22318452 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

AGTAGTTGAGAAGCTCTTGAGGAACAGAAGTAGCCATGCTGTATCTGACTCACGTAGCTCTGCTGCTCTTGTTCGGGATTAAAGGTGCTGCCAGCAGGAAAACAGCAGAAACACCAGAAGTTATTAAAGCAAGACTTGGAGAAGCTCTCACTCTAGACTGCAGCTACAACTGCTCCTCAGGGTTTGTTCGCGGTTATTGGAAATGGGAGGAAGAAGAAGCGCCGGCGTGTGAAAGCTGTCACTGGGAGAATAAACCCAATAAAAATGAAGACATGTGCACTCTGAGCTTATACACTCATAACCTGACCCTTCAGCAGACACTATACAACTACTCCTGCATCACTGAGCAGAGCGATGACCAGGACCTCCCTCTGAAAACAGAGCGGCTGATATCTCTGCAAATCCAAGaggTATCTATGAAGGTGGTGATTCATACGAATGCAGAAAACAACCCAGTTGAAGTGGTGTCATCACACTCCATTCAAGTGCCGGTGGGAGCCTACCTAGAACTGAAATGTCTTTCCACTGATAAACACTGTGAAGGCATGTGGATCAAGGATCAGGATCAACCAGACATTCGTCCTCCAGCAAACTCTGACCCACTACTCTGGGAGAAGATAACAGAGGAGGATGGAGGAAGCTACACATGCCATACAAAGCAGCTCTGTACCAGTCAGAGAATCACTGTCGAAATAGGAATAATTAAAGAcgAGGATTTTCGGCTGGATCAGGGCTTTAGCAGCTGTTGCAGTGTCTGCAGTCATGATGCTGATGATCATGCTGATCTACCTGTGTTACAAGAGGATGTGCAGTTTATCAGATCCAGAGGAATCATCTGACGCAATTTATGAGAACACAAGAACCAAAAATGCGATGACCGTCCTCAAACCTATTATACAAgAGTGCGAGACGGATCATGAGGTTCCCTACGCCGATATCGTGATTTCTGTGAGAGGGTCCAGCATTCCAGAACTGACGGGAACCCACGGTACTCAGGCCCCCAGGGACCACAGACTGagatggagagaggaggCCGCAGGAGGATCTCGTCTACAGGCCTGCCGCTCCGCTGACAGACTGCACGTTCACCCCAGGGAAGTCAGCAGGAAATTAAGCACAACTTCGGAGTACGCCATCATTACCTATTCAACAGAAGCACTTAGCTAGTGTTCAGatcagctgttttttatttgtatttttatttggttgtgTCCACTTTTTTCTGCCTCGCCCACTTTCAAAAGTGTGTTTCTTTCCCTCTTTGTATTTGAATATCTGGTCAGTTCATATTAAATGGTTTTAGGCTGTA

Function

GO: NA

KEGG:

id description
ko05340 Primary immunodeficiency

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16841 lncRNA upstream 82202 22164761 ~ 22227150 (+) False G12523
TU16840 lncRNA upstream 111526 22164761 ~ 22197826 (+) True G12523
TU16828 lncRNA upstream 175710 22130603 ~ 22133642 (+) True G12514
TU16825 lncRNA upstream 178352 22129179 ~ 22131000 (+) True G12513
TU16796 lncRNA upstream 226681 22030440 ~ 22082671 (+) True G12496
TU16872 lncRNA downstream 11267 22329719 ~ 22341513 (+) False spa17
TU16893 lncRNA downstream 157752 22476204 ~ 22519541 (+) True G12562
TU16888 lncRNA downstream 175616 22494068 ~ 22517780 (+) False oaf
TU16927 lncRNA downstream 193078 22511530 ~ 22512347 (+) True G12581
TU16939 lncRNA downstream 254112 22572564 ~ 22615440 (+) True G12585
XM_022675098.1 mRNA upstream 353508 21938389 ~ 21955844 (+) True ankk1
XM_022677910.1 mRNA upstream 378048 21919218 ~ 21931304 (+) True LOC111194280
XM_022675083.1 mRNA upstream 403957 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA upstream 403957 21851036 ~ 21905395 (+) False ttc12
XM_022677900.1 mRNA upstream 481970 21764958 ~ 21827382 (+) True LOC111194279
XM_022677927.1 mRNA downstream 841 22319293 ~ 22341508 (+) True spa17
XM_022675133.1 mRNA downstream 33917 22352369 ~ 22391001 (+) True LOC103037938
XM_022675143.1 mRNA downstream 87927 22406379 ~ 22435434 (+) True LOC103038252
XM_022675158.1 mRNA downstream 87927 22406379 ~ 22435434 (+) False LOC103038252
XM_022675150.1 mRNA downstream 87928 22406380 ~ 22435434 (+) False LOC103038252
TU16611 other upstream 845703 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 1333075 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 1337258 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 1337258 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 2885288 19412844 ~ 19424064 (+) False LOC103043893
TU16873 other downstream 11267 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 11267 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 155200 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 1535546 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2395899 24714351 ~ 24717226 (+) False ccdc9

Expression Profile