RNA id: XM_022677728.1



Basic Information


Item Value
RNA id XM_022677728.1
length 872
RNA type mRNA
GC content 0.58
exon number 2
gene id LOC111194248
representative True

Chromosome Information


Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 26933254 ~ 26936810 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence


aagacagagagagagatatggttTATATAAAGCCATATAGACCGTCATAAGTTTTAATGAAAGGCAAGAAGATGAGacTAACATCAGCCAGCAGCACTGATGCCCACCGCCACGCCAGCTGAGCTTCCAGCGTCAGATTACATCCTGTGACGTCAGCATTTCCCTAACAAGCGTCCATGGATCCTCACCTCAAAGACCCGTACGCCCCCGATGTCCCCGGCGTCCCCGATGTCCCCGACTCCCAAACGGAGGACGACAGCTACCTCCCGGACCTGGAGTGCGCCGTGTGCTTCAGCCAGTTCAACAACGTCTTCAACACGCCCAAGATGCTGGAATGCAAACACACCTTCTGCCTGGAGTGCCTCGCCCGCATGAACGTCAAATCCATGCAGCCCGAGAGCATCCAGTGCCCGCTGTGCCGGGCGTACACCCACTTACCCGCCATGGGGCTGCCCAAGCTGGCCACGGACCCCAAGGTGCTGTCCTACCTGCCCGATGCCATGCAGCGGGTCTACAGCATCCGCTTCAGCAGGGATCGGGGCAAGCTGCAGGTCAAGCGGGTGCCCAGCTCCATGCCACCCTGCGCCGCTGAAGTGCGCCACAGCATGGACCTCGGTATGCCTGCCGAGGCCGACGATCCCGACCGGAGAAGCGAAAGGCAGTCGATTTGCACCAGGCTGGCGCGGATGCCCCTCTGCAGGGCGCTATTCATGGCCTCGGGGGTGCTCATAATGGTCTCCCTAACCATCGGCATCGTCATCATCCTCTCCAATAAGAAGTGAGGTCACTATGGAGGCGTGGCCAAAGTGTCGGACCAAGAGCGTGCCAAACACTAAGAACTAAAGCCAAAGAACTGAGTCAGTTTACCCCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU18745 lncRNA downstream 234461 26670119 ~ 26698793 (-) True G13960
TU18751 lncRNA downstream 255348 26676771 ~ 26677906 (-) True G13963
TU18522 lncRNA downstream 621504 26311435 ~ 26311750 (-) True G13801
TU18473 lncRNA downstream 926574 26002331 ~ 26006680 (-) False nars2
TU18477 lncRNA downstream 957271 25971405 ~ 25975983 (-) True G13769
TU18925 lncRNA upstream 1066 26937876 ~ 26962565 (-) True G14112
TU18923 lncRNA upstream 24916 26961726 ~ 26962565 (-) False G14112
TU18945 lncRNA upstream 26832 26963642 ~ 26964693 (-) True G14125
TU18961 lncRNA upstream 108698 27045508 ~ 27046047 (-) True G14130
TU18962 lncRNA upstream 110059 27046869 ~ 27047115 (-) True G14131
XM_022677718.1 mRNA downstream 12003 26915440 ~ 26921251 (-) True LOC103036549
XM_007241691.3 mRNA downstream 46843 26884856 ~ 26886411 (-) True LOC103036237
XM_022675716.1 mRNA downstream 74197 26835494 ~ 26859057 (-) True LOC103042772
XM_022677967.1 mRNA downstream 99641 26824856 ~ 26833613 (-) True fam109a
XM_022675710.1 mRNA downstream 115343 26773030 ~ 26817911 (-) False sh2b3
XM_022675726.1 mRNA upstream 3033 26939843 ~ 26946203 (-) False wdr31
XM_022675723.1 mRNA upstream 3033 26939843 ~ 26946203 (-) True wdr31
XM_022675734.1 mRNA upstream 10848 26947658 ~ 26958832 (-) False poli
XM_022675731.1 mRNA upstream 10848 26947658 ~ 26958792 (-) True poli
XM_022675746.1 mRNA upstream 35442 26972252 ~ 26982609 (-) True ankle2
TU18929 other downstream 30541 26899005 ~ 26902713 (-) True G14113
TU18930 other downstream 30541 26899005 ~ 26902713 (-) False G14113
TU18787 other downstream 99656 26830021 ~ 26833598 (-) False fam109a
TU18746 other downstream 234461 26678281 ~ 26698793 (-) False G13960
TU18474 other downstream 916858 26007242 ~ 26016396 (-) False nars2
TU18940 other upstream 86703 27023513 ~ 27029917 (-) False fam214b
TU19514 other upstream 2676802 29613612 ~ 29643303 (-) False emp2
TU19553 other upstream 2820877 29757687 ~ 29761226 (-) False dexi
TU19597 other upstream 2952425 29889235 ~ 29890576 (-) False LOC111193878
TU19677 other upstream 3324208 30261018 ~ 30268350 (-) True rps15a

Expression Profile