RNA id: XM_022677873.1


Basic Information

Item Value
RNA id XM_022677873.1
length 4424
RNA type mRNA
GC content 0.39
exon number 32
gene id itgae
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 18297556 ~ 18322614 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATTCATTATCTGTTACTGCCGACCACAATGAGAAGTTGGTTTCTCAGTCTGCTGCTCTAGCAAATGAAGTATCAGTCACTTCAGTTGGATTATCTCAGCAAGATGTTTGCAGCATTTCTCCTGGTGACAGGGCTATGCACCACGGCAGCATTCAACATATTCACAACGCAGGTAGAGACCTTTACAAACATTGATCCACGGTTTGGACAGACCATAGTCAAGTCAAGAGATGGagTTTACGTCCCTACCAAAGGAAAGGTTTTCAAATGTGTGCAGGACAGTGAGTGTGTTCTGGTGAATGAAATCGAAATGAAAGGCCTGAAACCAATCGTATCTGTATCATCCAACTTGACTGAGGAGGAAGAGCAATTCCTGGTTTGTAATCAAGTTCGGACCCGGAACGGCTCTGCTGAGTATTTCAATGGACTTTGTGTGCACATGATTAATGAGGATAAGCAGGCTGACATCAATCCTTCCAAGTTAGTCTCAcagcaacagcaaaaaaatgctTTGAAGGGTGCCAGTGAGAATAAAACAGGTCACTCAAGGCGGAAAAGGCAGGCTGAGCTAAATGGCGATgacgaagaagaagatgaagaagaagacgCTGGGACGGAGATTGCTTTTGTACTGGATGGTTCTGGGAGCATTGAACCTGAGGATTTTGTTCGGGCCAAAGACTTTATGTCTGATGTGATGAAAAATGTTTGGACGACCTGTTTAACATGTAATTTTGCAATAGTGCAGTTCGGATCTGAAATAAGGACAGAACTCTCATTGATGGATAATGATGATGGAGAAAAGGCCTTGGATAAGGTGAAAAACATAAACCAGATAGGCAAGCTGACCAAGACTGCCTCAGCCCTCTACCATGTTCTGACAGAAGTGTTTGTTCCTGAACACGGGTCAAAACCGAACGCCACAAAAATGATTATCGTATTATCTGACGGAGAAATGAAAGGAATCCAGCCGAGGAATCTCTCATATGTCTTGGAAATGCCGCAGATGAAAGGAGTTCTTCGCTATTCCATAGGGGTTGGATCTGAGCTTCTGAACagtaaaaaagcaataaatgaGATGACGGAGATAGCTGGTAGCAAAGACAGATTCTTTAAGGTTTCTGATTACGCAGCCTTGAACACAATTCTttctaaaatagaaaaaagcatATTTGACATTGAAGGCATTAATAAGGGTGCAGGATTTCATTTTGAACTTGCAGAAGCTGGATTCAGCTCTCATCTAACTCACGAAGGGTCAATGCTGTTTGGGGCGGTGGGGGCCTATGACTGGAGTGGGGGAATTATCCTGAAAGGGAAGGAAGAAGAGAGTGTGACATTTTTTAATGCAACTACTGAAGAACCGAGGTTTTCTTATTTGGGTTACAGTGTGACATCTGGACGCATGGGTAATGAAAACCTATACATATCTGGAGCTCCCAGGTACAACTTGACTGGTGCAGTCTTTATCTTTAATGGAACCGATCAGGAGTTGATTCTAGGAGATCAGGTTGGATCTTACTTTGGATCAGTTCTTTGTGCCTTGGACATTGATAGCGATCAGGAGACAGATTACCTGCTGGTTGGAGCCCCACACTTTCATATAAAAGGGGAAGAAGGCAAAGTGTTTGTGTACAAACTTCATGAAGGGAAGTTTCAGAGAGAAGATTATGTACTGCAAGGAACAGGGAAACACATCTACGCCAGGTTTGGCTCTGCCATAGTCGATATTGGAGATATTGATGGGAACAAATTCAGAGACGTGGCAGTGGGAGCTCCTCTGGAACCAGCAGATGAGCTGACTGATGTTTCCGGAGCCATTTACATCTATAACGGATTTGAATATGGGATAAAGCAGCAGTTTTCACagagAATTGCAGCTTCTGGTTTTGAGATGAAACTTGTAcattttggtcaggcagtgagTGCCATGATGAAGAAAGAAGATTCAGAAAGAGACAAGAACAATCTTTTACTCAGTGTTGGGAGTCAAGGGGCTGTCACTGTattaaaGACAGTTCCTGTCATCATTATCACACCAAAAATAACACTTGGTCTAACAGAGATTTCCCCTGATAAGCAGAACAATGAAAAATCAAGCCAAATCGAGTCATTTATCCAAATCTGCTTTGATAACACAAGGAAAAGAATTGACAATGATGAAGAACTACTCATTGAGTATCAAATTGATTTGGACTTCGGTAAAGAAGAAAAACGACTAATTTTTGTTGAACACCATGAAAAGCAAACCAGATTCACtctgacaaaatataaaaactgcataagcaaaataaatgttaaatatatgGGCTGCTATGACTGTTTTTCACCTATAAAAATAAAGGTACAATTTGAATTGCCCTCACACACTGAGGGAATCCCTGTGCGAGTGCTTGATGCTTTTAGTCCAACGGAGTTCACAAAAGAGATTGAGTTCCAAAAGGAGTGTAATATCACAACAAGCTGCAAGCCAAAATTTTCATTAGATGGTTCAAAACTAAGTTACAGCAATTACTTGATCATAATTGGATCCTCTCAATCCTTGGGTATAATCTTTGATCTTCAAAACTCTGGGAAAAGCTCGTATATCACAACTCTGACTCTGACTTATCCTAACATACTACAGGCAAAGAAAATTGAGGGCGGATCATGTGAGATGAAAAATGAGGACCTTCAAATAATATGCAAACTCTTACATCCTGTTTTTAAGGGAGGTGCACAGaccAAGGTCGCAATCGACTGGCAGCCGATTAACAGCAGAAAGTCAGACCTGACCACTGGGACGATCAGAGCTGTTTTAACAGGAGGAAATGCTGGCACTAAGACCCTGGCCTCTAAGGAGTATGATTTTGTAGTGAGGAATGCCCTAAAACTTCAGCTCACtggcacagctTCACAAAACATTTTCGCGATtgaagaaggaaaagaaagcCCAAATAAGGACCCAAAAGTGCTGCAGTTCACTTTTAAGCTACTGGGTGACAACAAGTACAAGGCTGAAATACATGTGATGATAAcaatagaaaagaaaacacaagacaTAAAACTGATCATCAAGCAAGTTCGACCTCAAGAGCATTGTAAAACACTGTCTGGAGAACAGAACGAGAGCAACCTTCGTGTAGAATGCATTCTGACTGAATTGCAAGACATTACCATCAACACTGATGTCATTATTAATGACATTAAGATTACTGAGAGGATCACTGCCAAAGCAGAACTCAGCTTTAATGAGAGCATCTACGAAGGACAAGACATGAGGAAGATGGAAAAGGTGGAAGTGGTAGTTATCAAGCAGAAGATTGTGAAATCAACTGCAGTAATTGCAGGTGGCTCCGTTGGGGGGTTTCTGCtgttaatcatcatcatcattgttcttataaagTGTGGCTTCTTCCGTCGACGGCATCATATGGAGCGTACACAGAGCACACACTGAGAGCTGTCAATTGTCAGCATGACTATACCAgattgttattatattttaaatattgtgactttttatatattgtatcacTAGTCACCtctttatgttatgtttttagAAGCAGCCTAAACTAAATGTCattcatttgtttcattttttattttctcatattttatatttatagactGAAGTGAAAAATTTTAAAATTgaatcttttaataaaatttgaatattattttttctatctATCAAATAAGATGAGACCTGAAAAGACAAAACTctgtgtacttaagtactgcaAGTACTTTATTGTACTACTTAAGTACTGAAAGTACAAGTACAGTATTGATATAGATATTGATATAGATATTATTGAAAGCAGTCAAAAGTAGGGAGGCAGCAGTGTGAAAGGCAGAACGGGAGCAACATGTCTTCTTATATGACAGCTTAATCACTTGATTCACTCAGTGATTTTTATCAAACCCGTATTAAACATATCGAATtatgtattaaagtaaaagagTACTACTTTGTTACTATACATACTCCTTTACAGtttctttatgtatttttttttatgcattcatattttttatttatttaatttctggaaatacatagaaaaaacatgcaaatttgcaaataaataaatgcataaaaagtGTCTTGCACAATCATTTAGACtttttatgtgtatattttaagtccaatttatttatatagcactttttacaactgatgttgtcgGAAAGCAGCTTTAGAGAAATGTGGTAGCAGtgcagagaatcagacaaaatattgaacatacaacacagaacggaggcaaggaaaaacacCCTCAGAgttggaggaggaagaaacctgtAGAACAGTACCTTGTACTATATCATAGGTACTGTCACATGTGCTATCAAGGCTAATATGTAaaggggacccatcctcctctggtcaaacaacttataaataaagttaaaaagtcattatgtatgtattacaca

Function

GO: NA

KEGG:

id description
K06524 ITGAE, CD103; integrin alpha E

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU15420 lncRNA downstream 50385 18246243 ~ 18247171 (-) True G11449
TU15311 lncRNA downstream 160369 18136907 ~ 18137187 (-) True G11365
TU15308 lncRNA downstream 174459 18122824 ~ 18123097 (-) True G11362
TU15239 lncRNA downstream 481685 17815640 ~ 17815871 (-) True G11299
TU15237 lncRNA downstream 522877 17774218 ~ 17774679 (-) True G11297
TU15445 lncRNA upstream 27970 18350584 ~ 18351976 (-) True G11466
TU15453 lncRNA upstream 45239 18367853 ~ 18369340 (-) True G11473
TU15465 lncRNA upstream 64441 18387055 ~ 18404593 (-) True G11481
TU15466 lncRNA upstream 71620 18394234 ~ 18412893 (-) True G11482
TU15470 lncRNA upstream 71620 18394234 ~ 18410570 (-) False G11482
XM_022674298.1 mRNA downstream 1494 18279158 ~ 18296062 (-) True cul5
XM_007231022.2 mRNA downstream 23308 18266393 ~ 18274248 (-) True mrpl28
XM_015608588.2 mRNA downstream 23325 18266393 ~ 18274231 (-) False mrpl28
XM_007231019.3 mRNA downstream 58990 18237312 ~ 18238566 (-) True mos
XM_022677680.1 mRNA downstream 68209 18226104 ~ 18229347 (-) True LOC111194212
XM_022674345.1 mRNA upstream 116526 18439140 ~ 18445785 (-) True tubd1
XM_022674351.1 mRNA upstream 116650 18439264 ~ 18445800 (-) False tubd1
XM_022674383.1 mRNA upstream 291583 18614197 ~ 18632647 (-) True LOC103040343
XM_022674419.1 mRNA upstream 412787 18735401 ~ 18762753 (-) True pou2af1
XM_007260522.3 mRNA upstream 510810 18833424 ~ 18838223 (-) True LOC103039462
XR_454920.3 other downstream 1943722 16323033 ~ 16353834 (-) False LOC103036671
XR_002650886.1 other downstream 2395123 15762347 ~ 15902433 (-) False LOC103030038
XR_002650881.1 other downstream 2395123 15762347 ~ 15902433 (-) False LOC103030038
XR_002650882.1 other downstream 2395124 15762347 ~ 15902432 (-) False LOC103030038
TU14624 other downstream 3010821 15285845 ~ 15286735 (-) False LOC111188178
TU15837 other upstream 786099 19108713 ~ 19111572 (-) True G11719
trnap-cgg other upstream 916292 19238906 ~ 19238977 (-) True trnap-cgg
TU16077 other upstream 1463367 19785981 ~ 19802213 (-) True jam3
TU16104 other upstream 1675826 19998440 ~ 20082442 (-) True G11917
trnak-cuu other upstream 2652468 20975082 ~ 20975154 (-) True trnak-cuu

Expression Profile