RNA id: XM_022677910.1


Basic Information

Item Value
RNA id XM_022677910.1
length 3974
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC111194280
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 21919218 ~ 21931304 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CTTCACAAAGCACTAAATTGCCCACAATAAAAGGGCACACAAGCATAATTATGGCAAACATTAATACACATGCTTTGGAGGTGCCATTTTCAATCACTGTTAAACCATATGTAACAAGTCCACTTGTTACATCTCCATTGACACCCAAGTTGTTGCAGAGAATTGTGCTTGCAGGAGTTGAAAGCGAAGGTGAACTGACAAGACCTTCAGTAGACACCTCAGCACCATTGGAATTATCTTTCCAGGAGGTAGTTAAGGGAACTTCACAAAGCACTAAATTGCCCTCAACCAAAGGGCACACAAGCATAATGATGGCAAACAGTAATACTGTGAATGAGAATTTCCTAGATTTTAAGTTTTCACATCCTGTGGAGGTGCCCTTTTCAACCACTGGCAAACCAGGAGATGAAAACGAAGGTGAACTGACAAGACATAGCACTTCAGCTAGAGACAGACAAGTGGGAACGACAATCTCCTCAACTTCTCAATCACTTCAAAGTACCACAATAGTGAAAGATGAAGGAATGCCCAAGTTGGTTGTAACCGTCCTCCCATCCAAGTTCACTGAAAGACCTTCACAAAGCACTAAATTGCTTACCACTGAAAGACATGCAAGCCTAATAATGGAAAACACTAATGATGTGGATAAGAAGTTCCCAGATTCTGAGTTTTCACATCCTTCGGAGGTGCCCTTTTCAACAACTGGCAAACCATATGTAACACAATCGTTTGTAACCTTGCCTTCGACACCCAGGTTGTTGCAGAGAATTGTGCTTGCAGGAGTTGAAAGAGAAGGTGAACTGACAAGCCGTAGCACTTCAACTAGAGACAGACAAGTGGGAACGACAATCTCCTCACCTTCTCAATCGCTTCAAAGTACCACAATAGTGAAAGATGAAGGAATGCTCAAGCTTGTAACCGTCCTCCCGTCCAAGTTCACAGACAGACCTTCAGCGTTAATCAAAGTTAAAAATGCCACTCAGCCTGGCAACAGTCTTCTCGGAGCCCATCAGGACATTTCATCCACTGACAGCCGTTCTTTCCGAATGTCTGAACACTGCTGTAAAGTTTCTATTGAAAATAGAACTTCACATCCTGAGGGGAATGAAAACAATGACAGTATAGCCCTGACAGATAACAGAACTGGACATTTTCACACATTAATCGATGAATTGATGCCAGCTGCCTCCAGCACAACTCAATTTCCCGTTGCTCAGAGGGTTATGACTATATCTGCCCAAagtaaaaatgattcagaattaGATTTAGCCGAACAGACTGAAAGGGTCGTAAGCAAATTGACCCAAAGCAAGCCTCTGATTTCTGCCTCCGACAGTATGCATCACTTGGCCACATCAGACCATCCTGATCAATCGCAGAAAATACCCACGACTCCCTCCCAGATCCCTCCAAGGGAGATACAGAACTTATCGCCAATCTTTGAAGGTCACGCTGTCACTTACAGTCCTGTCAGGCAGCGGCTAATTTCATCCCTGACGGGAAGAGCAAAGCCTTTGACTTTCCTATCAAGTCTGACCACCGGCCACACGCCATTTCATCATCCCGGCCGTGTGCTCAAAGGACATCCATCGATTGTGCCGTTAGGACATTCTGCATCTCCACCTGAATTGGTGACTTTTCAGGATTTAGAAAATACACAAGACTCGACAAGTTTCCAGACGGcgaacataaaaataaaaaatacagagccCACCGTGTTTCAGAAACTGCTAACTCCGCACTCTGAGAGGCTAATCAGGACCACAAACACCTGGCCAGTGACAGGAAGAAGCTCTGTAAATTCCTTTTCTGCACAGTTTACCAGCACAGCCGGGTCAGATAAAGGAAGTACAGTGCTTCTAAGTGTGTCTTCATTGAGCACTGCTCTTCTGCACCACTTTTTGGCAGCATCACATGAAAAAAGCAACGTAAAGAAAACAGACAAAGCAATGCAACAAGATTTGGTTTCAAATCGAAGTCAGACAgatgtccttttttttaaaccttcgCAAAGTGAAATCACTGAGCCACTAGGTGTAGATAGTGGAGATTTAGATGATGCAAATCAAATGGTAGTGACTGAGCAACCTCAACCCAAAGAAAACCATGATTTCATGAGTCATAGTGTCTCAACGTCTATGGAAAATATCCAAAGAAAGAAAGCTGCAGGAACGATGGATGTAAAGAGTATAGTTTCTACACAGTCGCCCTTAAAGCAAGAGTCAGAACAGAGTCGTTCAGCAGCTGAAACGAAAGCAGAAAGCTCCACTGGTGCGTTCATACTCGACCAAAATGCTCAGAACGCTTTCAGCATGCAAAACAAGGATCAGACCCCTGCGACAGTTCTAATGGAAAACACTGTGTCATCCTcgcaaagtcaaagtcaaagagGCAAGGATCTACGGAAAACTACCGAGGGCCAAATTGACGCATCTGTTACGCCAGCTGCCGTTGAGAGTTTACGCTCTACTCAACCTTTGGCTTCCCTGGCTGCTGCTGTCGCTGAAACTCCAAAAATGGTTGAGCAGATGATTAATCAGGCAAGTTCACCCGGCTCTACTTTATCATCCATCATAGATGCTGCGTCAGAGGGAaaagattttaataaaaaaagagtccTGCTATCAGTGAATCAAACAACCCAACGTGAACCCAACGCGTCTGCGATTAACCACCTTCAAGCCAAGGCAGCTTCAAGCCAAGCCCCTGGATACACAAGAGCCCCGAAGAGACACCTCATAAACAATGAAGCTATAAACCATCTGACCTTGAACCCCAAACCACCATCATATACTCCTCCTCCAGCACCTGAAGCAACTAGCATTTTGATGAGATCTGATCGTAACACATCCCAGTCCTCCTCATTTACACCTTTATTGCGCTCATCCCCTTCATTCCCTTCAACTCCTTCAAGGATCCTGACAAACTTCTCAACTACATCATCAACAAGTCATTCTcgattatataatatacaacagGATATTATACAGGAAGACTCTCCTCAGACCTCAAGGTCTTCTGTTACTCAAGCAACTTTCTTCAATTTCGATCACAACTATGGAAGCACAGCGAGTTTTGAGTCAACAGCAGCAGAATCCCCTCAAACAGCTTCATTACAAATACTGGAAACGATGGAAACGAGCGAGACAAGCGGAAGACAAAACGAAGGTCGTCTGTCCACCGTTTTCCCATCTGAGACCAGCCTTTCAAAGTCAGCTGAGATGATGTCAGACCTGCCAGTGATGCAGAGGAGGATGAGGATTGCATCGCCCGACTTTCTCAGTGGCCTGGCTCAGATCTCTGATGATATCTGCGGCAGTGGGAACTACACGGCGGAGATGCGTCTGACTCTGGAGAGAGACATCGAGCCGGGAGATCTGATTCCTGCTCTGGGAAACCTGCACGTGGTCATCAACCTGAAAACTAACAACACCCAGGTGAACCTGGAGATAAAGTCCTGCTGTCTGTCTCCCACCGTCACCCTGGACCAGTTCAACACCACCTGCTGCCTGTTCTCCAGGTTACCTATAGATCCTCAAGGCATCCGCCTGCTTCCCAGCGTTCTGTCAAAACGAGCCAGCTTCACCATCAGTCTCTTCCAGATGATTAACTACTCCACCGCCTACCTGCACTGTGATCTGAGCGTGTGCCTGAGGAACAGCTCTGAGTGTGAGCGGTGTCAGCAGAACAGGAAAGCTTGTCTTTCTGATGAAGAGGAGATCATCTTCAGCTATACAGCAAACCGGATTTCCTTCGGTCCAGTTTTAAAAGAAACAGGTGTTTCTCCATTCATAGAAACTACAGGATTGGACGGTGCCGAGGCGGCAGCGGTTGTGGTTTCGGTGTCGGGCTGTTTTCTGGTTTGTGTAGCTCTGCTGCTTCTTTGGACGTTTTACAGACGTCGCTCGGAAAGGTCTGGACACTGCTGGACTCCGTATGGCTGCTCACGCAACGGAGAACACGTCTTACCCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU16762 lncRNA upstream 19498 21899470 ~ 21899720 (+) True G12470
TU16722 lncRNA upstream 176914 21741857 ~ 21742304 (+) True G12445
TU16696 lncRNA upstream 202829 21679840 ~ 21716389 (+) True G12424
TU16700 lncRNA upstream 233276 21685357 ~ 21685942 (+) True G12428
TU16692 lncRNA upstream 270575 21648352 ~ 21648643 (+) True G12421
TU16779 lncRNA downstream 6437 21937741 ~ 21984852 (+) True G12483
TU16792 lncRNA downstream 61039 21992343 ~ 21993142 (+) True G12492
TU16796 lncRNA downstream 99136 22030440 ~ 22082671 (+) True G12496
TU16798 lncRNA downstream 108549 22039853 ~ 22066354 (+) True G12497
TU16809 lncRNA downstream 132180 22063484 ~ 22064367 (+) False G12502
XM_022675083.1 mRNA upstream 13823 21844765 ~ 21905395 (+) True ttc12
XM_022675089.1 mRNA upstream 13823 21851036 ~ 21905395 (+) False ttc12
XM_022677900.1 mRNA upstream 91836 21764958 ~ 21827382 (+) True LOC111194279
XM_007229378.3 mRNA upstream 321866 21574950 ~ 21597352 (+) True LOC103031614
XM_007229377.3 mRNA upstream 370131 21544356 ~ 21549087 (+) True nkapd1
XM_022675098.1 mRNA downstream 7085 21938389 ~ 21955844 (+) True ankk1
XM_022677708.1 mRNA downstream 378048 22309352 ~ 22318452 (+) True LOC111194234
XM_022677927.1 mRNA downstream 387989 22319293 ~ 22341508 (+) True spa17
XM_022675133.1 mRNA downstream 421065 22352369 ~ 22391001 (+) True LOC103037938
XM_022675143.1 mRNA downstream 475075 22406379 ~ 22435434 (+) True LOC103038252
TU16611 other upstream 455569 21459850 ~ 21463649 (+) True G12362
trnan-guu other upstream 942941 20976204 ~ 20976277 (+) True trnan-guu
TU16384 other upstream 947124 20963049 ~ 20972094 (+) False LOC103033739
TU16383 other upstream 947124 20966288 ~ 20972094 (+) False LOC103033739
TU15744 other upstream 2495154 19412844 ~ 19424064 (+) False LOC103043893
TU16873 other downstream 398415 22329719 ~ 22341513 (+) False spa17
TU16874 other downstream 398415 22329719 ~ 22384972 (+) False spa17
TU16886 other downstream 542348 22473652 ~ 22512636 (+) False oaf
TU17542 other downstream 1922694 23853998 ~ 23855353 (+) True G13067
TU17745 other downstream 2783047 24714351 ~ 24717226 (+) False ccdc9

Expression Profile