RNA id: XM_022677922.1


Basic Information

Item Value
RNA id XM_022677922.1
length 1766
RNA type mRNA
GC content 0.55
exon number 12
gene id LOC111194282
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22258919 ~ 22269228 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GGGGCACTGTGGAGGACATCCTCCCCTGCCCCCCAGGCACATACAGTCCCAAAGCAGGGCAGAGCCAAGTAGAGCAGTGTTCACTGTGCTCAGCTGGCATGTACTGTGAGGACTGGGGACTAGTGGAACCAACTGGTCCCTGCCAGTCAGGGTATTTTTGTCTAGCAGGCATAAATTTCAGGAACCCTGATGGGAATTTCAGCACTGGGGTTGGGGGAGCGTGTCCTTTAGGGCATTACTGTCCTGAGGGCACCAGTCTACCTCTACCCTGCCCACTCGGGACCTTTTCCAACAGCCTGTATGTCACAGATCGCTCAGGCTGCAGTTCGTGTCCTGCGGGCCAGTTCTGTGGCTCTGTGGGCCTCAGCAGGCCATCTGGACACTGTTATGAGGGATTCTACTGCCCGAGCGGAGCTACCTCCTCCACTGGCTCAGGCACAGAGGGTGGACTCTGTCCTCAAGCACATCACTGCCCAGCAGGCAGCGCACTGCCACTTCCCTGCCCAGCAGGCACCTACGCCAACCTTACTGGCCAGGTTATGTGTAGCATTTGTCATGCTGGATACTACTGCCCAGAAATCACCAGCAACTATACTCACTATCCATGCCCGCCTGGCTTCTACTGTCCTGAtgGCACAAAGCATGCTACGCAGTTCCCATGCCCAAGAGGCTACTATAACCCTGAGCCCATGACCCAGAGCCTGGACAGCTGCCTACCCTGCCCTCCAGGCCACTACTGTGAGAAGGAAAGACTGACAGCTGTGTCAGGGAAATGCAAAGCTGGCTGGTTTTGTGTCTCAGCTGCCTGGAACCCTCAGCCGTTTGACCTGGATAATTATACCAATGCTAACTGTCTGTGTCCTGCCACTTCTACCGGGGGGAGATGCCAGGCAGGGTACTACTGTCCATCAGGCAGCTCAGAGCCCATACCCTGCCCTCCTGGAGCCTTCTGCAATTCCACTGGCCTGGCCTTGCCAAGTGGTCCCTGTGCCTCTGGTTATTATTGCACTGGAGAAGCTACAGAATCTAAACCGACAGATGGCATCACTGGCAGCATCTGCCCTCAAGGCTCTTACTGTGTTGAGGGCTCCAGAGAGCCAGAGCTGTGCCCAGTGGGCACATTCTCCCTGGCATCAGGCTTAAAGAGCCAGGCTCAGTGTCAGCCGTGCAGAGCCGGGCACTACTGCAGCTCTCGAGGCCTAAGAGCTCCCACTGCTCGCTGCAGTCCGGGTTACTGGTGCCCCCCCGGTCAGACTGATGACCTAGCTCTTCCTTGTCCGGTCGGTCATCACTGTCCCCCAGGAAGTCCTGCCCCAGTTCTCTGCCCCTCTGGGACATACCAGGACAAACAGAAGCAGGCCAACTGCACAATCTGTGAAGAGGGTTTTTACTGTGATGAGAGGTTTGGAGTCTCTAATGCATCTGTCCTGCAGTCCTGTCCAAAGGGTCATTACTGCCCTAAAGGAACAAGTTATGCCACTCAGTTCCCATGCCCCGCTGGTACCTACAACCCATTAGAAGGCATGGATAGCCTAACTGGCTGTCTTCAATGCCCATCAGGACACTTCTGCCCAACAGTAGGCCTTATAGAGCCTGCAGGATTGTGCTTCCCTGGATACTGGTGTCGAGAAGGCTCCCACTCAGCCAGTCCATCTACTGGATCCTCCGGTTCAATTTGTCCAATTGGACACTACTGCCCCAAAGGTATTACTGCATGCGTTTTGCATCAGAATTACGTCTCAAACCATGAGAAGAAAGATGTATAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17198 lncRNA downstream 24057 22141079 ~ 22234862 (-) True G12803
TU17218 lncRNA downstream 28063 22221199 ~ 22230856 (-) True G12813
TU17187 lncRNA downstream 70581 22128005 ~ 22188338 (-) True G12797
TU17112 lncRNA downstream 119081 22133357 ~ 22139838 (-) True G12743
TU17115 lncRNA downstream 119081 22133357 ~ 22139838 (-) False G12743
TU17262 lncRNA upstream 86616 22355844 ~ 22365170 (-) True G12834
TU17277 lncRNA upstream 200147 22469375 ~ 22470901 (-) True G12849
TU17286 lncRNA upstream 207076 22476304 ~ 22519510 (-) True G12854
TU17288 lncRNA upstream 224840 22494068 ~ 22517783 (-) True G12856
TU17289 lncRNA upstream 245296 22514524 ~ 22525772 (-) True G12857
XM_022675110.1 mRNA downstream 11460 22205062 ~ 22247459 (-) False LOC103037608
XM_022675106.1 mRNA downstream 13619 22205062 ~ 22245300 (-) True LOC103037608
XM_022675114.1 mRNA downstream 67382 22179416 ~ 22191537 (-) True LOC103032877
XM_022675122.1 mRNA downstream 94350 22141770 ~ 22164569 (-) True scn3b
XM_022675126.1 mRNA downstream 94370 22141770 ~ 22164549 (-) False scn3b
XM_022675222.1 mRNA upstream 1278014 23547242 ~ 23553965 (-) False LOC111193708
XM_022675241.1 mRNA upstream 1381189 23650417 ~ 23724768 (-) True LOC103035063
XM_022675250.1 mRNA upstream 1497799 23767027 ~ 23775316 (-) True c1qtnf5
XM_022675334.1 mRNA upstream 1521503 23790731 ~ 23853298 (-) True LOC103035686
XM_022675259.1 mRNA upstream 1590525 23859753 ~ 23895075 (-) True ube4a
TU17143 other downstream 264168 21993807 ~ 21994751 (-) True G12767
trnak-cuu other downstream 1283765 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 2176477 19998440 ~ 20082442 (-) True G11917
TU16077 other downstream 2456706 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 3019942 19238906 ~ 19238977 (-) True trnap-cgg
XR_002650646.1 other upstream 1270029 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other upstream 1272106 23541334 ~ 23553970 (-) True LOC111193708
TU17895 other upstream 1515243 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 1634955 23904183 ~ 23908771 (-) True G13322
TU18307 other upstream 3204506 25473734 ~ 25494452 (-) True G13630

Expression Profile