RNA id: XM_022677923.1


Basic Information

Item Value
RNA id XM_022677923.1
length 1758
RNA type mRNA
GC content 0.57
exon number 12
gene id LOC111194286
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 22269223 ~ 22283102 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atgcaaGACGAGGGCTCAGATGAGTGCTCGCCGTGTCTGCCGGGTCACTACTGTAGTGACGAGACCACCAGTGAGGAGGCCATGTTACGGGTGATGGTCTGCCCACCAGGCTTCCTGTGCTCACAGGGTTTGGATCGGGAGCCCCAGCGTTCAGCCATTCTCTGCCCTATAGGCTTCTACTGCCCTGGGGGCGGAGTTAATCCACACCCCATAGCCTGCCCTAATGGCACTTACAGCCAACAGCCAGGTCTGCGTGACCCTTCAGACTGCACTAAGTGTCCTGTGGGAATGTACTGTTTCTCACACCAGCCCCAGGACAAGCCCATCACTGAACCAACTGGAGGCTGTCCTGATGGATACTACTGTCCTGTGGGAACCGGACATCCTCTTTCCTTCCCGTGTGAATCAGGATTTTTCAGGAATGAGTCTTACGGGCATGATGGAGGGAGTTGTGTGAAATGTCCTGCAAGATATTACTGTGCCAGTGTGGCGACACACACGCCTACAGTGTGCCCAGAGggTTTTTTCTGCCCCGAGGGCAGTTCTGCTGCAGAGCCGTGTGAGGAGGGTACTTACGGCTCTCGCTCAGCTTTGCGTGAGGCGTCAGAGTGCACCCCGTGTGGTGGAGGCAGGTACTGCGCTGGAGTTGGCCAGACAGAACCATCAGGAGACTGCGAGGCAGGATTTTACTGCATGCAGAAAGCCACCAGTGCAACTCCGCTTGATAGTCAGACTGGAGGTCTCTGTCCAGCAGGAAGTTTCTGCCCCCCAGGTTCAGCTCATCCAGAGCCCTGCCCCTCAGGAACTTTCAGCAACAGCTCCGGTCTCAGCCACGCCTCGCAGTGTGTCAGATGTCCTGCAGGCAATTACTGTCTGGGATCAAACAGCACTTCACCCACCGGGCTGTGCTCTGCTGGATATTACTGCACCGGCGGCTCTGCATCTCCTGTTCAGCATCAGGCTGAGGAAGGTCACTACTCTCTAGAGGGAGCTGTGAAGGCTGAACCCTGCCCTTTAGGCACTTTTCAACCTGGAAGAGGCCAAAGCTCATGTATTGAGTGCCAGCCGGGTCGACTGTGCAACACGACGGGTCTGTCCCAGCAGCCTCTCTGCCCATCAGGACATTACTGCCCAGCTGGATCTTTAATCGCACACCCGTGTCCTCCTGGTACCTACACGTCTAATGCAGGAGCAGAGAAGGTGCAGCACTGTGGTCCATGTGATGCTGGGCAGTACTGTCACTCTCCTGGTCTCTCGGCTCCTGAGGGACTCTGTGAGTCTGGATTCTACTGCAGCGGAGGAGCCATCACTGCCACGCCAGTGAACTTCAGGTCTGGAGATGTGTGTCCTGCAGGATATTACTGCCCTGAGGGCACCAGGCACCCCCGTCAGTACCCCTGTCCCCTTGGCACCTGGAGCAACATGATTGGAGCTCAGAACGTCTCTTCCTGCTGGCTCTGCCCACCAGGCTGGTTCTGCAACAACACGGCTCTCACTCAGCCCTCAGGCGTCTGCTCTGCAGGATTTTATTGCACCGCTGGAGCTAAAACCTCTATGCCTGAAGATGGAGTTACAGGAAACAGATGCCCCCCAGGATATTTCTGCCCATCAGGCTGCACTTCACCTAAACACTGCCCTGATGGTACTTACTCCAACACTACAGGTGCGGCAGAGTGCAGCGACTGTCCTCCGGATGGCTCTGTCTGGAAGGCGAGGAGGCCCAGCTGTGTCCAGAGGGCCATTACTGCCTAGGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17198 lncRNA downstream 34361 22141079 ~ 22234862 (-) True G12803
TU17218 lncRNA downstream 38367 22221199 ~ 22230856 (-) True G12813
TU17112 lncRNA downstream 129385 22133357 ~ 22139838 (-) True G12743
TU17262 lncRNA upstream 72742 22355844 ~ 22365170 (-) True G12834
TU17277 lncRNA upstream 186273 22469375 ~ 22470901 (-) True G12849
TU17286 lncRNA upstream 193202 22476304 ~ 22519510 (-) True G12854
TU17288 lncRNA upstream 210966 22494068 ~ 22517783 (-) True G12856
TU17289 lncRNA upstream 231422 22514524 ~ 22525772 (-) True G12857
XM_022675110.1 mRNA downstream 21764 22205062 ~ 22247459 (-) False LOC103037608
XM_022675106.1 mRNA downstream 23923 22205062 ~ 22245300 (-) True LOC103037608
XM_022675114.1 mRNA downstream 77686 22179416 ~ 22191537 (-) True LOC103032877
XM_022675122.1 mRNA downstream 104654 22141770 ~ 22164569 (-) True scn3b
XM_022675222.1 mRNA upstream 1264140 23547242 ~ 23553965 (-) False LOC111193708
XM_022675241.1 mRNA upstream 1367315 23650417 ~ 23724768 (-) True LOC103035063
XM_022675250.1 mRNA upstream 1483925 23767027 ~ 23775316 (-) True c1qtnf5
XM_022675334.1 mRNA upstream 1507629 23790731 ~ 23853298 (-) True LOC103035686
XM_022675259.1 mRNA upstream 1576651 23859753 ~ 23895075 (-) True ube4a
TU17143 other downstream 274472 21993807 ~ 21994751 (-) True G12767
trnak-cuu other downstream 1294069 20975082 ~ 20975154 (-) True trnak-cuu
TU16104 other downstream 2186781 19998440 ~ 20082442 (-) True G11917
TU16077 other downstream 2467010 19785981 ~ 19802213 (-) True jam3
trnap-cgg other downstream 3030246 19238906 ~ 19238977 (-) True trnap-cgg
XR_002650646.1 other upstream 1256155 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other upstream 1258232 23541334 ~ 23553970 (-) True LOC111193708
TU17895 other upstream 1501369 23784471 ~ 23803818 (-) False LOC103035686
TU17900 other upstream 1621081 23904183 ~ 23908771 (-) True G13322
TU18307 other upstream 3190632 25473734 ~ 25494452 (-) True G13630

Expression Profile