RNA id: XM_022677939.1


Basic Information

Item Value
RNA id XM_022677939.1
length 4895
RNA type mRNA
GC content 0.52
exon number 24
gene id brip1
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 24567591 ~ 24687178 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CACACAGCGAGGTAGAGATGGCTGGGAGTACAGTGGAGTACACTATAGGAGGAGTGAAAATCAACTTTCCCTGTAAAGCCTACCCCTCTCAACTCGCCATGATGAATTCAATTGTTCGGGGTCTGAATCACGGGCAGCACTGTCTGTTGGAGAGTCCCACTGGCAGCGGGAAGAGCCTGGCACTGCTGTGTTCAGCCCTGGCGTGGCAGCAGGCACAGTACGGAAAGCTCGGTCAGGATGGATCTTCCTGTGGTGTGAAGAAGCCGGGTGTGATCGCTccgtgtcagtgtgtgtgtcacaGCCGAGCTCCCGCTACACACActtcctccagcagcagcacagccttTAATCCAGCACGGATCGATAATAATCACACTCACACTGATACTCCTCTGAAGGCACAAGAGGACAATCCATCCCAGAGGACGACTCTGTCCTCCAGACTCTCCGAGAAGCTTCAGGCCTCCTGTGCTGCGAATAAAGAAGAAGAGAACGAGGAGGAAGACGGCGATTTCAGGAGCGACAGGAAGCGCATTCGGACTCCTGCTGCGGATCAGAAGCTCAATAGCGCTTTCCTTCCTCAATCCTTTGATGTTCAGCAGAGCAGGAAGAGAAGGTGTCTGGAGAAAGGCGTGGTTTATAtcgatgatgaagatgaagataagGCAGGAAGCTGCAGGGTGGAGCTGAGCAGTCAGGCAGAGCGCTGTtCTCCCGTGTCCTGTACCCTGTGCCCCTGTGCCACTCTGGGAGAAGCTCAGAAGACAGGGGAAAAGACGAAGGATAAAGAGAAGGATAAAGAGAAGGAGGGCAACATGAAGAAAACTGTACCTAAGATCTTTTTTGGAACTCGTACCCATAAACAGATCACTCAGATCGCCCGCGAGCTGAAGAGGACACTGTACTCCACCGTCCCCATGACCATCCTGTCCAGCCGAGACCATACCTGCGTCCACCCTGAGGTGATGCCCCACGCCAACCGCAACGAGCGCTGCAAGGAGCTGCTGGAGGCCAAAAACggTCTCTCTTGCCGGTTCTACCATAATGTGCATAAGATGCGGGAGCAGAGCAGTCTGCAGTGGGTGCACGGGCTGCACCAGGCCTGGGATATAGAGGAGCTGGTACGACTAGGCACTAAGCTGCGCTCCTGCGCGTACTACGCTGCACGGGAGCTCATGCAGGAGGCATGCATCGTCTTCTGTCCTTACAACTATTTACTGGACCCTCTTATTCGGGAGAGTATGGAGATTAATCTGCAGGGGCAGATCGTGGTTCTGGATGAAGCTCATAATATAGAGGACTGTGCCCGCGAGAGTGCCAGCTTCACCCTGAACCAGGCTCAGCTGCTTCAGGCCCGCGAGGAGATCGAGAGCCTGGTCTCCTACAACATCCGCCGCAGCAACCACGAGCCTCTGCTGGCCTTCTGCTGCAGCCTGCTGAAcTGGGTGCAGGAGAGCTCCGGTTCGCTGCGAGAGCGGGATTATGAGAGTGCGTGTAAGGTCTGGACGGGGAGGGAAGTTCTGGAGATTTTTCATGGTTTTGGAATCACAGCTGCCACTTTTCCACTGCTGCAGAAGCACCTGGAGGCGGTTCTGGAGAAAGAGGAAAGGATCGGATTGGTGAACGGGAGAGAGGACACCGTGCAGGTTCCCACCATCGCCTCCAGCACTCAGTCTGTGCTCAAGAGCCTCTTCATGGTGCTGGAGTTCCTGTTCCGACAGAACTGCAGgtttgcAGATGATTATCGTGTGGCCCTGCAGCAGAGTTATATCTGGAGCACTCAGCAGGACGCTCCTGATGCTCAGGGTTTTTTCGCTCGGCCGCAGCGCCGCCGTCAGACTCGCACTAAAACCATGGTGCACACTCTGAGCTTCTGGTGTCTTAACCCTGCTGTGGTGTGGGTTGGTACAGTTGGAATGGGTCCTCAGGGTCGGAGGCTGTGTGCTACGTTTCAGCACACGGAGACGTTTGCGTTTCAGGATGAGGTGGGGGCGCTGCTGCTGAAGGTGTGTCAGACTGTGAGTCGGGGAGTGCTCTGCTTCCTGCCCTCATACAAGctgcTGGATAAGCTGAGGGATCGCTGGATGAACACGGGTCTGTGGGAGAAGCTGGAGGAGTGTAAGGCCGTGATCACAGAGCCAAGAGGAGGAGCCAAGAGCGACTTCGATGAGCTTCTGCAGACTTACTATGAGGCCATACGGCAAAGTGGATCCAGAGatGGAGCTCTGCTGATCGCTGTGTGCAGAGGGAAAGTGAGTGAGGGGCTGGACTTCACTGATGATAACGCGAGAGCAGTGGTCACTGTCGGGATTCCCTTCCCCAACATCAAAGACCTTCAGGTTGAACTGAAGATGAAATATAATGATCAGCATTCCAAATCCAGAGGTCTTCTACCTGGAGGTCGCTGGTATGAGATCCAGGCGTATCGAGCTTTAAACCAGGCTTTAGGAAGGTGCATTCGGCATAAAAACGACTGGGGGGCTCTTATTCTAGTAGATGACCGTTTTAGATCCAACCCCAACAAGTACATCACAGGCCTGTCGAAGTGGGTCCGTCAGCTGGTGAGACATCACGAGAACTTCACCAGCGCCATGCAGTCCCTGCAGTCCTTCTCCCAGAGCCAACAGGGGGCGCTGCAGAGCCACGCCCAGGAGCCCGGACACATCGTCCCCGTGTCTCCTAGTGTCTCCAGGACCGAGACATCAGCTCTGTCCCCTCCTGAATTCCCCGACTTATCTCAACACCTGACCTCTCAGGATCACACGGCCCTGTGTCCCGTCAGCTTCCCATCTGAACCAGcaGGCGCCCAGTCGCTTTTACCTCCACCCTCTGATCCTCCAGTCCTCCAGAGTGAAGAATCCAAAATCAAATCCACATCACGACCTTCATTTAACCTCTTCACCTCCACTCCTGTCAGCACCCGCCTGAAAACACCTCTCTTTAAAACCAGGGACTTTAAAAAGAAGGATGCTGATCAGAGCCCCAGATCTCCAGCATCCTGTAAAAACCTCATCATTCCAGCAGCTGTGGAGGAAGAAGAAGCTCAGACGGGAagtggaggagaaggaggaggaagtgCTGATAAAAACGGACTAAAAGTGATAAGATCTGATCTTCCTCCTCAACAGTTCCTCTTATCTCCGGTAAGATCTGTCCCTGGatgcagcagcatcagcaccaccagcatcatcaccatcagtgctgctgctgctgctgcaggtcctgaagaagatgatgattatggaggaggagaagaagagcaGGACGAGAGGTCCTGCTTCACCCCAGAGCTCTTTGATaatgatgaggaggaggaagatggTGAGATAACTGTAGGAGATGAGAATAAAGCTCCTTCTGAGAGGGGACAGATCTCCTGTCCTTCTAGTTCGGTCACTGAGGGACATTCTGAGGACATGTCCTGCTTGGAGCAGATCAGGAAAAGGATCAGCCTTGAAATTACTGATACTAAGATCAATAATGATGTTTATAAAGCTGACTGTGTTTCTCTGAACAGAGAGTGTGTTATAGATCAGAGTGTAGCAGAGCAGACAGGGACGAGCTGTAGGACAGGACATGAGGACAGGGACAGAGGACAAAGACAGCGCAGTAATAGCAGATCACACAGGCTCTCCAGGTCTAGACAGAAAGCTCCCAGcaaatcagcagcagcttcagGTCAGGGATCAGTTCAGCAGGTCAGTGCAGGAGAAAGGAAGGGATTGAGAGCGTCCCGACGAGGAAAGCAAACCAGGGGTCAAGCGAGTTCTTCACCCTCAACAAACCGAACTCTAATAATCCCTCGTTCAGACTCGACCCGAGACGAACCGGTTCAGATCAGGGACAGGAAGGGGAAAGCAGGAGAATCCTCTGAAGCTCCTGAACCCCGGAGAACCTCCTGCTCTACAGAGCCCTCAGAGCCCTCAGCCTCCTCCCGCCTGCAGTACAGCAAAAACaccgctaacgctaatgctaaagctaaagttcGGTCAGCGAGACGCAGAGCAGGACTCGAGTCCTGCAGCACTGATACGGTTCTGCTGAAGAGCTCAGCTGATCAGGAGCAGGACGCTGTGAGATTTGAGATCATCACTCCGGAGAACAGGAGCAGAGAAGATCCAGAACTAACAGAGGAGGAGAATCAGGGATCAGGAgGGATTAGGATTCAGAGATCCTGTGTGAGGAACAGTAAGAAGATCAGAAAGGTGCAAAAAGGAGTTTGTAGAAGCAGATCTGCTCAGAGACAGAAGCAGTCTTCCTGCCAGACCCCCTGTATGAAAGGACTTCACTGTGCTTCCTGCCAGACTGAGCTCCTGCCCCAAACCCAAGgtgTTGTTCAGAGAGCAGAGTGTGGATCAGCTGAACTGTCCTGTTTACTGCAGATCTGCAGGAGGATAAACGAGACTCAGTGTTCATGCAGCCCCTCAGCATCCACCCAGAACACCAGCACATCACTATTACTGATCCAGAATAGTGACGCTCTACAGACCCTACGCTCCACTCTACAGCCTTACACAGCCCGCACTCTAACAGgTCTGTGTTCATATAACGCAGTGTGGAATCAGGCTCAGTGTTCAGTGATTCAGCTGCTTCAGTGTCGGTTCTGTCTGTCCTGCTGTCCGGATCCAGATCATGCTGCTGTCCTCGCTGCTGATATCCAGAACCCAACAGACCCGTCCCTGGACCAGATCTGGTTGGTTCCCTCAGCGCTTCGATTCTGCTGTAGGATCATCACTGATCAGGGAAGTAAACAGTGAGCTGATTTTCCACATTTGTTTTACCTAAATAAACtattattgtaaataattttctttataaataattagatGAACTGATGAATCAgttgtatgttttatttgatCAGAACTCTGAATGTGTCTGTTCGTGTTGAACAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K15362 BRIP1, BACH1, FANCJ; fanconi anemia group J protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_002650656.1 lncRNA downstream 80863 24477718 ~ 24486728 (-) True LOC111193726
TU17954 lncRNA downstream 81051 24477903 ~ 24486540 (-) False LOC111193726
TU17926 lncRNA downstream 422355 24108652 ~ 24145236 (-) True G13341
TU17915 lncRNA downstream 495625 23992719 ~ 24071966 (-) False G13331
TU17914 lncRNA downstream 548144 24000084 ~ 24019447 (-) True G13331
TU17994 lncRNA upstream 20308 24707486 ~ 24712985 (-) True G13393
TU18027 lncRNA upstream 88630 24775808 ~ 24809071 (-) True G13419
TU18035 lncRNA upstream 281114 24968292 ~ 24968831 (-) True G13427
TU18063 lncRNA upstream 304743 24991921 ~ 24993523 (-) True G13444
TU18099 lncRNA upstream 356062 25043240 ~ 25043516 (-) True G13476
XM_022675270.1 mRNA downstream 620213 23928815 ~ 23947378 (-) True nlrx1
XM_022675273.1 mRNA downstream 620213 23932139 ~ 23947378 (-) False nlrx1
XM_007258874.3 mRNA downstream 620213 23932139 ~ 23947378 (-) False nlrx1
XM_007258873.3 mRNA downstream 620213 23932139 ~ 23947378 (-) False nlrx1
XM_022675312.1 mRNA downstream 640215 23909411 ~ 23927376 (-) True LOC103036322
XM_007258876.3 mRNA upstream 2897 24690075 ~ 24699460 (-) True ppm1d
XM_007236781.3 mRNA upstream 299888 24987066 ~ 25003911 (-) True pgm2l1
XM_022675374.1 mRNA upstream 319814 25006992 ~ 25038802 (-) True LOC103033355
XM_015602314.2 mRNA upstream 363782 25050960 ~ 25056101 (-) False spcs2
XM_007236779.3 mRNA upstream 363782 25050960 ~ 25055975 (-) False spcs2
TU17900 other downstream 658820 23904183 ~ 23908771 (-) True G13322
TU17895 other downstream 763773 23784471 ~ 23803818 (-) False LOC103035686
XR_002650646.1 other downstream 1013621 23539257 ~ 23553970 (-) False LOC111193708
XR_002650645.1 other downstream 1013621 23541334 ~ 23553970 (-) True LOC111193708
TU17143 other downstream 2572840 21993807 ~ 21994751 (-) True G12767
TU18307 other upstream 786556 25473734 ~ 25494452 (-) True G13630
TU18373 other upstream 1037735 25724913 ~ 25726156 (-) True G13677
TU18474 other upstream 1320064 26007242 ~ 26016396 (-) False nars2
TU18746 other upstream 1991103 26678281 ~ 26698793 (-) False G13960
TU18787 other upstream 2142843 26830021 ~ 26833598 (-) False fam109a

Expression Profile