RNA id: XM_022678020.1


Basic Information

Item Value
RNA id XM_022678020.1
length 1387
RNA type mRNA
GC content 0.55
exon number 3
gene id LOC107197536
representative True

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 31216232 ~ 31222423 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATGCCACCCCTCTTCCAAATCACTAAAACAAGGCCGGTCTCTGATGCTGctactgatgatgatgatgatgatgatgaagagccGGGGCCGGCGGAGAACTCCTGCTATTGGCTGCACCTCCCAGGGGAgggggtggaggtggtgggCGGGGGCACTAAAAAGGCAATCAAGGAACCTGGAGGGAGGCAAGACAGGACCAAGAGGAGGCAAGACAGGATCTCAGGAGGCTTCATCTTCACTGCAGGATCAGGAGCTGAGTTCCTTCAGAGAGTCAGAATCAGATCAGgctgttttctgtattttctcagtgttAAAGTTCAGGCCTGGACATCTGTGGAGTTCACAgatctgctgcttctgctgctgttcttcACACCCTCTGCAGGAATGACTTCCAACACTAAAGTCCTGAGCTGGTCAGATGTGAACATGCCCAAACAGCTGGAggctttctctctgtctgaacATCCCAGAGTGACCTGCGCTGACCTGCGAGGCTGGATCAGCCCTGCTGGACACTCCTATACACCCGCCGGACTGCGCTCAGTGTACACCCACGCCTCGTTGGACGTCACGCTGGATAAATGTGCAGGAAGCCCCGCCCCTACTGTTCCAGAAGAGGAAAACAACAGAGACAAAGAGTCCGGGGccaaacagcaacagcagcagcacctgAGCGCCCCCCAGAGGCACCGGCGGGTGGCGGCGAACGCCCGGGAGAGGCGGCGGATGCACGGTCTGAACCGGGCTTTCGATAAGCTGCGGAGCGTCATTCCGTCTCTGGAGAACGAGAAGAAGCTCTCCAAGTACGACACGCTGCAGATGGCCCAGATCTACATCGCCGAGCTGTCCGAGCTGCTGGAGGGCGTGGTCAGGTCCGAGTGCAGGAGCCCCTATCAAACGGAGCGGATCATAAGGACATGTCCGGTGGAGACGCCCACTCTGGCTCCGGCGTGCCTCGAACGAGACGCCGGCGTCCCTGAGGGACGTCTGCTCATCCTGTCCACACCTACTGTCCACTACAGTCCAGAGAAGAAGAGCGAGGTCATCACACTGTCCAGCGCCAGCGACGGAGAGTCGTCCCACTTCAGCGACGCCGAGGACGGACAGTCCAGGGGGTGCTGACCCGCTGCATAGTGGTGCATAGTGGTGCATACGTGCGAAAAGAGGCACTCTTATGATGATGTCATCTGATCTGTCTGTGTTTTAGTAGACGTTAAGAGGGACCAAATAGTGCGGGTAGATGTTTAGTAGACTATTGAGAATTATTACCTgagaaaaatggacaaaaaactaagaaaaagaaaagaaaagaaaagacgaACAACCTGCAACGGCACACAGAATGTTAACCATGGCTGCGTCCCAATTGCATACAATACActta

Function

GO:

id name namespace
GO:0048840 otolith development biological_process
GO:0042668 auditory receptor cell fate determination biological_process

KEGG:

id description
K09083 ATOH1_7; atonal protein 1/7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19982 lncRNA downstream 2176 31212569 ~ 31214056 (-) True G14879
TU19979 lncRNA downstream 22439 31180986 ~ 31193793 (-) True G14876
TU19921 lncRNA downstream 167625 31048356 ~ 31048607 (-) True G14834
TU19905 lncRNA downstream 232201 30983540 ~ 30984031 (-) True G14820
TU19866 lncRNA downstream 287843 30924840 ~ 30928389 (-) True G14807
TU19985 lncRNA upstream 33562 31255985 ~ 31256204 (-) True G14882
TU19986 lncRNA upstream 38345 31260768 ~ 31260986 (-) True G14883
TU19988 lncRNA upstream 45237 31267660 ~ 31268093 (-) True G14885
TU20188 lncRNA upstream 306914 31529337 ~ 31621297 (-) True G15023
TU20202 lncRNA upstream 622759 31845182 ~ 31876961 (-) True G15037
XM_007245593.3 mRNA downstream 91086 31106308 ~ 31125146 (-) True LOC103034575
XM_022676251.1 mRNA downstream 132940 31058768 ~ 31083292 (-) True LOC103047264
XM_015604857.2 mRNA downstream 137808 31058768 ~ 31078424 (-) False LOC103047264
XM_015604858.2 mRNA downstream 140533 31058768 ~ 31075699 (-) False LOC103047264
XM_022676246.1 mRNA downstream 140533 31058768 ~ 31075699 (-) False LOC103047264
XM_022676307.1 mRNA upstream 658371 31880794 ~ 31943297 (-) False pdlim7
XM_022676290.1 mRNA upstream 658371 31880794 ~ 31943297 (-) False pdlim7
XM_022676287.1 mRNA upstream 658371 31880794 ~ 31943290 (-) False pdlim7
XM_022676277.1 mRNA upstream 658371 31880794 ~ 31943289 (-) True pdlim7
XM_022676280.1 mRNA upstream 658371 31880794 ~ 31943289 (-) False pdlim7
TU19927 other downstream 160729 31053764 ~ 31055503 (-) True G14839
trnap-agg_1 other downstream 292285 30923876 ~ 30923947 (-) False trnap-agg_1
TU19838 other downstream 292983 30914910 ~ 30923249 (-) True G14781
TU19827 other downstream 323584 30889606 ~ 30892648 (-) True LOC103045124
TU20269 other upstream 920305 32142728 ~ 32159878 (-) False nfkb1
TU20525 other upstream 1591651 32814074 ~ 32820769 (-) False hopx
TU20526 other upstream 1591651 32814074 ~ 32819171 (-) False hopx
TU20527 other upstream 1591651 32814074 ~ 32819171 (-) False hopx
TU20934 other upstream 2912169 34134592 ~ 34136732 (-) True G15497

Expression Profile