RNA id: XR_002650951.1


Basic Information

Item Value
RNA id XR_002650951.1
length 335
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id LOC111194145
representative False

Chromosome Information

Item Value
chromosome id NC_035898.1
NCBI id CM008301.1
chromosome length 34292151
location 1038380 ~ 1040771 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

TGTCGATGTCCTGGTTCTGGTTGCGGAGGCGGATCTCTCTCACAGGCTGGACACCAACAGCACCGAGCCTGAGTCTGAGCCAGTGCCAGTTGCACAGGCTGAGGGGGATCTGGAGAGCAGCGTGGAGGTCGTGGTGGAGAGCACAGAAACAGCTCCAAAAACACAGAGACGACGGCTACAGCGCTGTCTGAGACTCTGGAGGAGCACAGCCTCTACCCTACTCTCCTGCTTTCCTTGTAGGCTTTAGTAGCATGACTGTAAATTACATTGTTGCCAAAGCATTATAACAATTAACAACAACAATGATATATGAATATACATAACAGACAgacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9620 lncRNA upstream 891 1037277 ~ 1037489 (+) True G7057
TU9617 lncRNA upstream 2423 1035072 ~ 1035957 (+) True LOC111194143
XR_002650948.1 lncRNA upstream 2423 1035154 ~ 1035957 (+) False LOC111194143
TU9541 lncRNA upstream 336060 701507 ~ 702320 (+) False G6995
TU9539 lncRNA upstream 336060 701787 ~ 702320 (+) False G6995
TU9681 lncRNA downstream 296468 1337239 ~ 1349486 (+) True G7106
TU9685 lncRNA downstream 298151 1338922 ~ 1339539 (+) True G7108
TU9776 lncRNA downstream 998652 2039423 ~ 2047563 (+) False LOC103037883
TU9807 lncRNA downstream 1086205 2126976 ~ 2128296 (+) True G7201
TU9818 lncRNA downstream 1106646 2147417 ~ 2148305 (+) True G7205
XM_022671653.1 mRNA upstream 466802 554179 ~ 571578 (+) False gtpbp1
XM_022671660.1 mRNA upstream 466802 554179 ~ 571578 (+) True gtpbp1
XM_022671656.1 mRNA upstream 466802 554179 ~ 571578 (+) False gtpbp1
XM_022671650.1 mRNA upstream 488638 540319 ~ 549742 (+) True LOC111193015
XM_022671639.1 mRNA upstream 510380 522929 ~ 528000 (+) False LOC111193013
XM_015602574.2 mRNA downstream 35211 1075982 ~ 1103227 (+) False LOC103025552
XM_007237779.2 mRNA downstream 36798 1077569 ~ 1103227 (+) False LOC103025552
XM_022671704.1 mRNA downstream 36979 1077750 ~ 1103227 (+) True LOC103025552
XM_007237778.3 mRNA downstream 38493 1079264 ~ 1103227 (+) False LOC103025552
XM_007237780.3 mRNA downstream 76730 1117501 ~ 1119058 (+) True ier2
TU9540 other upstream 336060 700764 ~ 702320 (+) True G6995
trnal-uaa other upstream 500483 537815 ~ 537897 (+) True trnal-uaa
trnal-caa other upstream 505168 533130 ~ 533212 (+) True trnal-caa
trnal-uag other upstream 505527 532771 ~ 532853 (+) True trnal-uag
TU9412 other upstream 600992 413131 ~ 437388 (+) False G6901
TU9686 other downstream 299435 1340206 ~ 1345431 (+) True G7109
TU9779 other downstream 1009548 2050319 ~ 2058823 (+) False carm1
TU9947 other downstream 1489845 2530616 ~ 2533763 (+) False G7296
TU10347 other downstream 2408450 3449221 ~ 3452666 (+) True G7593
TU10606 other downstream 2883514 3924285 ~ 3929003 (+) False natd1

Expression Profile