RNA id: NM_001291260.1


Basic Information

Item Value
RNA id NM_001291260.1
length 618
RNA type mRNA
GC content 0.51
exon number 3
gene id cartpt
representative True

Chromosome Information

Item Value
chromosome id NC_035920.1
NCBI id CM008323.1
chromosome length 47266144
location 40228839 ~ 40230309 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

ATCAGCACCATGGAGAGCTCGAGCGTGCGGGGCgcactgctgctgttgctgctgctcaGCGCGAGCGCACAGGACGCGGACACGGACAACGAGGTGGAGCTGGACACCCGCGCCATCCGGGACTTTTACCCCAAAGACCCCAACCTGACCAGCGAAAAACAGCTGcttGGCGCTCTCCACGAAGTGCTTGAGAAGTTGCAGACCAAAAGAATCCCACCTTGGGAGAAGAAATTTGGGCAGGTTCCcatgtgTGATGTTGGAGAGCAGTGTGCGGTGAGGAAAGGCTCGCGCATTGGGAAGATGTGTGACTGTCCCCGAGGAGCATTCTGCAACTTCTTCCTGCTCAAGTGCTTGTGAGGGGCAAAGCGTGTCCAGGGGCTTTTGAAGGAAAAGGGGAGGTGGGGAGGGGcagatctcacacacacacactgtccagaAGTATCAAAGTCATTtgtatagatatttttttaagtgcgaGAATTCACCAAAAAGTCGGAACTgttttttctgtaaagttgtGTTCCTGTTCTGAAGTGTTGCACACCTGTAATCATGTCCTCGACGATGTAACCTTCATGTTTTTGTGGATTAAAGTGACCCATAACGTCCTTTTGTAAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009267 cellular response to starvation biological_process
GO:0032099 negative regulation of appetite biological_process
GO:0000186 activation of MAPKK activity biological_process
GO:0008343 adult feeding behavior biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005615 extracellular space cellular_component

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU286401 lncRNA downstream 65289 40163333 ~ 40163550 (-) True G210959
TU286387 lncRNA downstream 90531 40137876 ~ 40138308 (-) True G210949
TU286374 lncRNA downstream 119916 40106604 ~ 40108923 (-) True G210937
TU286362 lncRNA downstream 154071 40072385 ~ 40074768 (-) True G210934
TU286234 lncRNA downstream 173621 40054723 ~ 40055218 (-) True G210868
TU286452 lncRNA upstream 141220 40371529 ~ 40372033 (-) True G210994
TU286461 lncRNA upstream 221933 40452242 ~ 40452572 (-) True G211001
TU286488 lncRNA upstream 268985 40499294 ~ 40500630 (-) True G211025
TU286489 lncRNA upstream 270890 40501199 ~ 40504302 (-) True G211026
TU286494 lncRNA upstream 281327 40511636 ~ 40512067 (-) True G211029
XM_022684093.1 mRNA downstream 8105 40165500 ~ 40220734 (-) False LOC103046604
XM_022684094.1 mRNA downstream 8105 40165500 ~ 40220734 (-) False LOC103046604
XM_022684092.1 mRNA downstream 8105 40165500 ~ 40220734 (-) True LOC103046604
XM_022684095.1 mRNA downstream 8106 40165500 ~ 40220733 (-) False LOC103046604
XM_022684096.1 mRNA downstream 34879 40165500 ~ 40193960 (-) False LOC103046604
XM_022684132.1 mRNA upstream 16297 40246606 ~ 40249542 (-) True c24h15orf40
XM_007238079.3 mRNA upstream 71850 40302159 ~ 40307383 (-) True LOC103042952
XM_022684131.1 mRNA upstream 78185 40308494 ~ 40312741 (-) True LOC103043462
XM_022684130.1 mRNA upstream 78185 40308494 ~ 40312510 (-) False LOC103043462
XM_007238081.3 mRNA upstream 78185 40308494 ~ 40312480 (-) False LOC103043462
TU286210 other downstream 288792 39933138 ~ 39940047 (-) True LOC103023530
XR_002651822.1 other downstream 432898 39646354 ~ 39795941 (-) False atp8a1
TU286109 other downstream 607339 39613718 ~ 39621500 (-) False bend4
TU286079 other downstream 688023 39527633 ~ 39540816 (-) True LOC103035726
TU285068 other downstream 3518096 36710420 ~ 36710743 (-) True G210059
TU286446 other upstream 130949 40361258 ~ 40363237 (-) True G210991
TU286454 other upstream 142496 40372805 ~ 40378353 (-) True G210995
TU286524 other upstream 332554 40562863 ~ 40563828 (-) False LOC103026726
TU286910 other upstream 1076637 41306946 ~ 41310735 (-) True LOC103037199
TU287190 other upstream 1974827 42205136 ~ 42205636 (-) True G211539

Expression Profile